Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g022140.1 Solanum lycopersicum HOM05D003052 ORTHO05D003434 2.2e-45 185.3 92 100.0
Sopen11g019060 Solanum pennellii HOM05D000002 ORTHO05D000001 7.7e-35 150.2 85 87.1
PGSC0003DMG400001278 Solanum tuberosum HOM05D003052 ORTHO05D003434 3.0e-31 138.3 85 78.8
CAN.G504.98 Capsicum annuum HOM05D003052 ORTHO05D003434 2.3e-23 112.1 90 63.3
Peaxi162Scf00632g00419 Petunia axillaris HOM05D003052 ORTHO05D003434 1.0e-18 96.7 96 57.3
Nitab4.5_0000486g0140 Nicotiana tabacum HOM05D003052 ORTHO05D003434 1.7e-18 95.9 99 53.5
Nitab4.5_0004637g0010 Nicotiana tabacum HOM05D003052 ORTHO05D003434 1.7e-18 95.9 98 55.1
Gohir.A13G204100 Gossypium hirsutum HOM05D003052 ORTHO05D003434 1.8e-15 85.9 77 55.8
Thecc.09G145000 Theobroma cacao HOM05D003052 ORTHO05D003434 3.4e-14 81.6 74 56.8
Gohir.D13G209400 Gossypium hirsutum HOM05D003052 ORTHO05D003434 8.3e-13 77.0 74 54.1
Gorai.013G238500 Gossypium raimondii HOM05D003052 ORTHO05D003434 8.3e-13 77.0 74 54.1
Nn8g39302 Nelumbo nucifera HOM05D003052 ORTHO05D003434 8.3e-13 77.0 97 44.3
EL10Ac2g02546 Beta vulgaris HOM05D003052 ORTHO05D003434 1.4e-12 76.3 77 46.8
Eucgr.C02856 Eucalyptus grandis HOM05D003052 ORTHO05D003434 1.8e-12 75.9 48 70.8
Eucgr.L02133 Eucalyptus grandis HOM05D003052 ORTHO05D003434 1.8e-12 75.9 48 70.8
Sabra06G0193500 Salix brachista HOM05D003052 ORTHO05D003434 2.4e-12 75.5 51 64.7
Manes.03G065300 Manihot esculenta HOM05D003052 ORTHO05D003434 3.1e-12 75.1 81 50.6
Potri.006G247300 Populus trichocarpa HOM05D003052 ORTHO05D003434 3.1e-12 75.1 51 64.7
Eucgr.C02852 Eucalyptus grandis HOM05D003052 ORTHO05D003434 5.4e-12 74.3 48 70.8
FAN20G2251 Fragaria x ananassa HOM05D003052 ORTHO05D003434 7.0e-12 73.9 92 41.3
BcaC09g52049 Brassica carinata HOM05D003052 ORTHO05D003434 9.2e-12 73.6 51 64.7
Atru.chr7.2331 Acer truncatum HOM05D003052 ORTHO05D003434 1.2e-11 73.2 48 68.8
Ah.12g063470 Amaranthus hybridus HOM05D003052 ORTHO05D003434 1.2e-11 73.2 79 45.6
Medtr1g011510 Medicago truncatula HOM05D003052 ORTHO05D003434 1.2e-11 73.2 85 42.4
Actinidia13283 Actinidia chinensis HOM05D003052 ORTHO05D003434 2.0e-11 72.4 48 66.7
Cpa.g.sc91.15 Carica papaya HOM05D003052 ORTHO05D003434 2.0e-11 72.4 58 60.3
Dinv30206 Davidia involucrata HOM05D003052 ORTHO05D003434 2.7e-11 72.0 95 43.2
AUR62032371 Chenopodium quinoa HOM05D003052 ORTHO05D003434 3.5e-11 71.6 93 41.9
THA.LOC104803819 Tarenaya hassleriana HOM05D003052 ORTHO05D003434 3.5e-11 71.6 49 65.3
Cfa021483 Carpinus fangiana HOM05D003052 ORTHO05D003434 4.5e-11 71.2 48 64.6
CiPaw.08G015100 Carya illinoinensis HOM05D003052 ORTHO05D003434 4.5e-11 71.2 48 64.6
Duzib168G2319 Durio zibethinus HOM05D003052 ORTHO05D003434 4.5e-11 71.2 83 48.2
TWI34G0683 Tripterygium wilfordii HOM05D003052 ORTHO05D003434 5.9e-11 70.9 52 61.5
GSVIVG01035716001 Vitis vinifera HOM05D003052 ORTHO05D003434 5.9e-11 70.9 52 61.5
AL7G19180 Arabidopsis lyrata HOM05D003052 ORTHO05D003434 7.8e-11 70.5 52 61.5
PSO063G7455 Papaver somniferum HOM05D003052 ORTHO05D003434 7.8e-11 70.5 48 64.6
PSO782G1491 Papaver somniferum HOM05D003052 ORTHO05D003434 7.8e-11 70.5 48 64.6
Prupe.1G467300 Prunus persica HOM05D003052 ORTHO05D003434 7.8e-11 70.5 48 62.5
Sp7g30360 Schrenkiella parvula HOM05D003052 ORTHO05D003434 7.8e-11 70.5 52 59.6
Ca_12912_v3 Cicer arietinum L. HOM05D003052 ORTHO05D003434 1.0e-10 70.1 81 45.7
MD15G1116000 Malus domestica HOM05D003052 ORTHO05D003434 1.0e-10 70.1 52 57.7
Carub.0007s0797 Capsella rubella HOM05D003052 ORTHO05D003434 1.3e-10 69.7 52 59.6
arahy.Tifrunner.gnm1.ann1.MC48K1 Arachis hypogaea HOM05D003052 ORTHO05D003434 1.7e-10 69.3 48 64.6
Haze_21617 Corylus avellana HOM05D003052 ORTHO05D003434 1.7e-10 69.3 48 62.5
MELO3C011216.2 Cucumis melo HOM05D003052 ORTHO05D003434 1.7e-10 69.3 72 50.0
Glyma.17G205000 Glycine max HOM05D003052 ORTHO05D003434 1.7e-10 69.3 47 63.8
PGR044G0983 Punica granatum HOM05D003052 ORTHO05D003434 1.7e-10 69.3 48 64.6
Aa31LG2G16910 Aethionema arabicum HOM05D003052 ORTHO05D003434 2.3e-10 68.9 52 57.7
C01p06370 Brassica napus HOM05D003052 ORTHO05D003434 2.3e-10 68.9 52 61.5
BolC1t00633H Brassica oleracea HOM05D003052 ORTHO05D003434 2.3e-10 68.9 52 61.5
CsaV3_2G031650 Cucumis sativus L. HOM05D003052 ORTHO05D003434 2.3e-10 68.9 73 47.9
FvH4_2g30090 Fragaria vesca HOM05D003052 ORTHO05D003434 2.3e-10 68.9 89 40.4
FAN24G3185 Fragaria x ananassa HOM05D003052 ORTHO05D003434 2.3e-10 68.9 89 40.4
FAN27G2734 Fragaria x ananassa HOM05D003052 ORTHO05D003434 2.3e-10 68.9 89 40.4
Lj8A611T46 Lonicera japonica HOM05D003052 ORTHO05D003434 2.3e-10 68.9 47 63.8
Oeu045183.1 Olea europaea HOM05D003052 ORTHO05D003434 2.3e-10 68.9 80 47.5
TPR.G20102 Trifolium pratense HOM05D003052 ORTHO05D003434 2.9e-10 68.6 83 47.0
AUR62024848 Chenopodium quinoa HOM05D003052 ORTHO05D003434 3.8e-10 68.2 93 40.9
AT4G32590 Arabidopsis thaliana HOM05D003052 ORTHO05D003434 5.0e-10 67.8 52 59.6
A01p05800 Brassica napus HOM05D003052 ORTHO05D003434 5.0e-10 67.8 47 63.8
BraA01t00549Z Brassica rapa HOM05D003052 ORTHO05D003434 5.0e-10 67.8 47 63.8
Lsat_1_v5_gn_6_10760 Lactuca sativa HOM05D003052 ORTHO05D003434 5.0e-10 67.8 50 58.0
Rhsim02G0188100 Rhododendron simsii HOM05D003052 ORTHO05D003434 5.0e-10 67.8 82 42.7
arahy.Tifrunner.gnm1.ann1.R0XIBX Arachis hypogaea HOM05D003052 ORTHO05D003434 6.6e-10 67.4 48 62.5
CANSAT25G2597 Cannabis sativa HOM05D003052 ORTHO05D003434 6.6e-10 67.4 93 43.0
TAR626G1117 Trochodendron aralioides HOM05D003052 ORTHO05D003434 6.6e-10 67.4 93 39.8
Sed0014329 Sechium edule HOM05D003052 ORTHO05D003434 8.6e-10 67.0 52 57.7
VMungo0647G0026 Vigna mungo HOM05D003052 ORTHO05D003434 8.6e-10 67.0 47 61.7
CARHR240560 Cardamine hirsuta HOM05D003052 ORTHO05D003434 1.1e-09 66.6 49 61.2
Phvul.001G055300 Phaseolus vulgaris HOM05D003052 ORTHO05D003434 1.5e-09 66.2 88 42.0
Rhsim02G0188300 Rhododendron simsii HOM05D003052 ORTHO05D003434 1.5e-09 66.2 81 42.0
FAN15G2025 Fragaria x ananassa HOM05D003052 ORTHO05D003434 1.9e-09 65.9 77 42.9
Ciclev10009578m.g Citrus clementina HOM05D003052 ORTHO05D003434 2.5e-09 65.5 48 58.3
QL12p031408 Quercus lobata HOM05D003052 ORTHO05D003434 2.5e-09 65.5 85 42.4
HanXRQChr07g0191431 Helianthus annuus HOM05D003052 ORTHO05D003434 3.3e-09 65.1 50 58.0
Cc08_g08040 Coffea canephora HOM05D003052 ORTHO05D003434 4.3e-09 64.7 48 60.4
Aqoxy7G01888 Aquilegia oxysepala HOM05D003052 ORTHO05D003434 5.6e-09 64.3 48 58.3
Os05g0555300 Oryza sativa ssp. japonica HOM05D003052 ORTHO05D003434 5.6e-09 64.3 48 56.2
Zm00001eb295180 Zea mays HOM05D003052 ORTHO05D003434 5.6e-09 64.3 45 57.8
RcHm_v2.0_Chr6g0312831 Rosa chinensis HOM05D003052 ORTHO05D003434 9.5e-09 63.5 56 53.6
CSS0049965 Camellia sinensis var. sinensis HOM05D003052 ORTHO05D003434 1.2e-08 63.2 47 59.6
ECA233G5297 Erigeron canadensis HOM05D000128 ORTHO05D000059 2.1e-08 62.4 57 49.1
Lalb_Chr24g0402301 Lupinus albus HOM05D003052 ORTHO05D003434 2.1e-08 62.4 87 41.4
Sc09g0008800 Simmondsia chinensis HOM05D003052 ORTHO05D003434 2.1e-08 62.4 47 61.7
COL.COLO4_24048 Corchorus olitorius HOM05D003052 ORTHO05D003434 2.8e-08 62.0 37 73.0
CDE07G1319 Ceratophyllum demersum HOM05D003052 ORTHO05D003434 3.6e-08 61.6 69 46.4
ATR0071G013 Amborella trichopoda HOM05D003052 ORTHO05D003434 4.7e-08 61.2 48 58.3
Eucgr.C02841 Eucalyptus grandis HOM05D003052 ORTHO05D003434 1.8e-07 59.3 37 70.3
ClCG08G012930 Citrullus lanatus HOM05D003052 ORTHO05D003434 2.3e-07 58.9 72 44.4
DCAR_007683 Daucus carota HOM05D003052 ORTHO05D003434 2.3e-07 58.9 48 56.2
Thhalv10026415m.g Eutrema salsugineum HOM05D003052 ORTHO05D003434 3.0e-07 58.5 37 70.3
SGA_v2.0_scaffold187G40270 Striga asiatica HOM05D003052 ORTHO05D003434 6.8e-07 57.4 48 62.5
Migut.E01491 Erythranthe guttata HOM05D003052 ORTHO05D003434 4.4e-06 54.7 95 33.7
Hund31144 Selenicereus undatus HOM05D003052 ORTHO05D003434 9.8e-06 53.5 67 41.8
Hund31145 Selenicereus undatus HOM05D003052 ORTHO05D003434 9.8e-06 53.5 67 41.8


User provided reference genes

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