Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g022120.3 Solanum lycopersicum HOM05D007178 ORTHO05D009022 1.3e-45 186.0 97 100.0
Sopen08g007660 Solanum pennellii HOM05D007178 ORTHO05D009022 1.3e-45 186.0 97 100.0
Nitab4.5_0000315g0010 Nicotiana tabacum HOM05D007178 ORTHO05D009022 3.2e-31 138.3 116 71.6
Nitab4.5_0005655g0060 Nicotiana tabacum HOM05D007178 ORTHO05D009022 2.7e-30 135.2 90 84.4
Peaxi162Scf00045g02430 Petunia axillaris HOM05D007178 ORTHO05D009022 7.4e-28 127.1 106 67.0
DCAR_027898 Daucus carota HOM05D007178 ORTHO05D009022 1.1e-23 113.2 70 80.0
TAR460G0007 Trochodendron aralioides HOM05D007178 ORTHO05D009022 2.7e-22 108.6 107 59.8
GSVIVG01021533001 Vitis vinifera HOM05D007178 ORTHO05D009022 2.7e-22 108.6 99 62.6
ECA234G3634 Erigeron canadensis HOM05D007178 ORTHO05D009022 4.6e-22 107.8 102 63.7
Cc00_g05770 Coffea canephora HOM05D007178 ORTHO05D009022 1.8e-21 105.9 76 69.7
Glyma.07G128900 Glycine max HOM05D007178 ORTHO05D009022 1.8e-21 105.9 87 66.7
Atru.chr10.1132 Acer truncatum HOM05D007178 ORTHO05D009022 3.0e-21 105.1 97 58.8
Phvul.004G171100 Phaseolus vulgaris HOM05D007178 ORTHO05D009022 3.0e-21 105.1 87 65.5
QL05p055487 Quercus lobata HOM05D007178 ORTHO05D009022 3.0e-21 105.1 69 75.4
Cpa.g.sc17.33 Carica papaya HOM05D007178 ORTHO05D009022 6.7e-21 104.0 76 69.7
Prupe.4G084100 Prunus persica HOM05D007178 ORTHO05D009022 6.7e-21 104.0 70 71.4
Aqoxy4G00077 Aquilegia oxysepala HOM05D007178 ORTHO05D009022 1.1e-20 103.2 74 71.6
Lsat_1_v5_gn_4_29580 Lactuca sativa HOM05D007178 ORTHO05D009022 1.9e-20 102.4 70 72.9
CiPaw.09G121000 Carya illinoinensis HOM05D007178 ORTHO05D009022 2.5e-20 102.1 70 72.9
CANSAT35G0370 Cannabis sativa HOM05D007178 ORTHO05D009022 4.3e-20 101.3 70 70.0
CSS0006510 Camellia sinensis var. sinensis HOM05D007178 ORTHO05D009022 5.6e-20 100.9 71 74.6
Duzib160G0207 Durio zibethinus HOM05D007178 ORTHO05D009022 5.6e-20 100.9 87 60.9
Glyma.01G003100 Glycine max HOM05D007178 ORTHO05D009022 5.6e-20 100.9 87 63.2
Duzib235G1408 Durio zibethinus HOM05D007178 ORTHO05D009022 7.4e-20 100.5 91 59.3
RcHm_v2.0_Chr5g0014561 Rosa chinensis HOM05D007178 ORTHO05D009022 7.4e-20 100.5 77 64.9
Ciclev10017932m.g Citrus clementina HOM05D007178 ORTHO05D009022 1.3e-19 99.8 95 58.9
Dinv21533 Davidia involucrata HOM05D007178 ORTHO05D009022 1.3e-19 99.8 101 56.4
Lj2g0013550 Lotus japonicus HOM05D007178 ORTHO05D009022 1.3e-19 99.8 84 60.7
Manes.17G073200 Manihot esculenta HOM05D007178 ORTHO05D009022 1.6e-19 99.4 70 68.6
Potri.004G133260 Populus trichocarpa HOM05D007178 ORTHO05D009022 1.6e-19 99.4 77 63.6
FvH4_3g05190 Fragaria vesca HOM05D007178 ORTHO05D009022 2.1e-19 99.0 85 58.8
FAN16G3072 Fragaria x ananassa HOM05D007178 ORTHO05D009022 2.1e-19 99.0 85 58.8
FAN21G4020 Fragaria x ananassa HOM05D007178 ORTHO05D009022 2.1e-19 99.0 85 58.8
Sc05g0006030 Simmondsia chinensis HOM05D007178 ORTHO05D009022 2.1e-19 99.0 91 60.4
THA.LOC104798400 Tarenaya hassleriana HOM05D007178 ORTHO05D009022 2.8e-19 98.6 101 56.4
FAN25G1793 Fragaria x ananassa HOM05D007178 ORTHO05D009022 3.7e-19 98.2 85 58.8
Thecc.06G146700 Theobroma cacao HOM05D007178 ORTHO05D009022 3.7e-19 98.2 70 68.6
MELO3C007115.2 Cucumis melo HOM05D007178 ORTHO05D009022 4.8e-19 97.8 93 58.1
Nn3g20425 Nelumbo nucifera HOM05D007178 ORTHO05D009022 4.8e-19 97.8 76 68.4
TWI73G0655 Tripterygium wilfordii HOM05D007178 ORTHO05D009022 4.8e-19 97.8 90 56.7
Ah.14g086320 Amaranthus hybridus HOM05D007178 ORTHO05D009022 6.2e-19 97.4 88 64.8
Gohir.A06G196500 Gossypium hirsutum HOM05D007178 ORTHO05D009022 6.2e-19 97.4 86 59.3
MD05G1280800 Malus domestica HOM05D007178 ORTHO05D009022 6.2e-19 97.4 67 68.7
Psat1g049440 Pisum sativum HOM05D007178 ORTHO05D009022 6.2e-19 97.4 93 59.1
Dinv32223 Davidia involucrata HOM05D007178 ORTHO05D009022 8.2e-19 97.1 76 68.4
TPR.G35503 Trifolium pratense HOM05D007178 ORTHO05D009022 8.2e-19 97.1 84 63.1
vmacro03352 Vaccinium macrocarpon HOM05D007178 ORTHO05D009022 8.2e-19 97.1 88 63.6
CiPaw.10G089700 Carya illinoinensis HOM05D007178 ORTHO05D009022 1.1e-18 96.7 102 53.9
CsaV3_6G051920 Cucumis sativus L. HOM05D007178 ORTHO05D009022 1.1e-18 96.7 70 70.0
MD10G1259200 Malus domestica HOM05D007178 ORTHO05D009022 1.1e-18 96.7 66 68.2
Sed0021444 Sechium edule HOM05D007178 ORTHO05D009022 1.1e-18 96.7 93 58.1
Cfa000915 Carpinus fangiana HOM05D007178 ORTHO05D009022 3.1e-18 95.1 102 52.9
unitig_26.g9766 Utricularia gibba HOM05D007178 ORTHO05D009022 3.1e-18 95.1 90 62.2
TWI09G0402 Tripterygium wilfordii HOM05D007178 ORTHO05D009022 4.0e-18 94.7 79 62.0
Gohir.D06G204000 Gossypium hirsutum HOM05D007178 ORTHO05D009022 5.3e-18 94.4 82 62.2
PSO541G3638 Papaver somniferum HOM05D007178 ORTHO05D009022 5.3e-18 94.4 70 71.4
PSO675G4358 Papaver somniferum HOM05D007178 ORTHO05D009022 5.3e-18 94.4 70 71.4
Gorai.010G238000 Gossypium raimondii HOM05D007178 ORTHO05D009022 9.0e-18 93.6 94 56.4
PGR083G2020 Punica granatum HOM05D007178 ORTHO05D009022 9.0e-18 93.6 74 68.9
Hund17773 Selenicereus undatus HOM05D007178 ORTHO05D009022 1.2e-17 93.2 100 54.0
ClCG01G024800 Citrullus lanatus HOM05D007178 ORTHO05D009022 1.5e-17 92.8 95 56.8
Gorai.011G046500 Gossypium raimondii HOM05D007178 ORTHO05D009022 1.5e-17 92.8 97 54.6
Gohir.A10G042700 Gossypium hirsutum HOM05D007178 ORTHO05D009022 5.8e-17 90.9 90 57.8
Gohir.D10G043700 Gossypium hirsutum HOM05D007178 ORTHO05D009022 5.8e-17 90.9 90 57.8
EL10Ac8g19636 Beta vulgaris HOM05D007178 ORTHO05D009022 1.0e-16 90.1 95 53.7
Sp7g15630 Schrenkiella parvula HOM05D007178 ORTHO05D009022 1.0e-16 90.1 93 57.0
COL.COLO4_31031 Corchorus olitorius HOM05D007178 ORTHO05D009022 1.3e-16 89.7 65 70.8
MBI18_g11238_MAGBIO Magnolia biondii HOM05D007178 ORTHO05D009022 1.3e-16 89.7 71 63.4
CARHR225220 Cardamine hirsuta HOM05D007178 ORTHO05D009022 1.7e-16 89.4 92 58.7
HPP92_014792 Vanilla planifolia HOM05D007178 ORTHO05D009022 3.8e-16 88.2 67 67.2
AT4G18400 Arabidopsis thaliana HOM05D007178 ORTHO05D009022 8.4e-16 87.0 108 51.9
Thhalv10026632m.g Eutrema salsugineum HOM05D007178 ORTHO05D009022 8.4e-16 87.0 85 58.8
BcaNung00005 Brassica carinata HOM05D007178 ORTHO05D009022 1.1e-15 86.7 78 60.3
BolC1t01205H Brassica oleracea HOM05D007178 ORTHO05D009022 1.4e-15 86.3 102 51.0
Migut.M00887 Erythranthe guttata HOM05D007178 ORTHO05D009022 2.5e-15 85.5 98 56.1
FAN11G0307 Fragaria x ananassa HOM05D007178 ORTHO05D009022 2.5e-15 85.5 62 62.9
A01p10340 Brassica napus HOM05D007178 ORTHO05D009022 3.2e-15 85.1 103 52.4
Lalb_Chr22g0349731 Lupinus albus HOM05D007178 ORTHO05D009022 4.2e-15 84.7 96 52.1
Lalb_Chr14g0375331 Lupinus albus HOM05D007178 ORTHO05D009022 5.5e-15 84.3 74 60.8
BraA01t00981Z Brassica rapa HOM05D007178 ORTHO05D009022 7.1e-15 84.0 103 52.4
A03p51260 Brassica napus HOM05D007178 ORTHO05D009022 9.3e-15 83.6 75 61.3
BraA03t14208Z Brassica rapa HOM05D007178 ORTHO05D009022 9.3e-15 83.6 75 61.3
AL7G35950 Arabidopsis lyrata HOM05D007178 ORTHO05D009022 1.6e-14 82.8 111 51.4
BcaC06g30589 Brassica carinata HOM05D007178 ORTHO05D009022 2.1e-14 82.4 93 53.8
CDE11G0374 Ceratophyllum demersum HOM05D007178 ORTHO05D009022 2.1e-14 82.4 97 47.4
CDE05G0627 Ceratophyllum demersum HOM05D007178 ORTHO05D009022 4.6e-14 81.3 102 47.1
VMungo0464G0906 Vigna mungo HOM05D007178 ORTHO05D009022 4.6e-14 81.3 60 68.3
Actinidia13672 Actinidia chinensis HOM05D007178 ORTHO05D009022 7.9e-14 80.5 55 70.9
arahy.Tifrunner.gnm1.ann1.KYL6KL Arachis hypogaea HOM05D007178 ORTHO05D009022 7.9e-14 80.5 88 53.4
Carub.0007s2286 Capsella rubella HOM05D007178 ORTHO05D009022 7.9e-14 80.5 94 54.3
vmacro05543 Vaccinium macrocarpon HOM05D007178 ORTHO05D009022 1.8e-13 79.3 80 55.0
BcaC09g51519 Brassica carinata HOM05D007178 ORTHO05D009022 2.3e-13 79.0 109 47.7
C01p12290 Brassica napus HOM05D007178 ORTHO05D009022 2.3e-13 79.0 109 47.7
SGA_v2.0_scaffold1G00199 Striga asiatica HOM05D007178 ORTHO05D009022 8.7e-13 77.0 69 62.3
HanXRQChr07g0199391 Helianthus annuus HOM05D007178 ORTHO05D009022 1.5e-12 76.3 46 76.1
FvH4_7g10051 Fragaria vesca HOM05D007178 ORTHO05D009022 7.4e-12 73.9 53 66.0
arahy.Tifrunner.gnm1.ann1.WWKL6Q Arachis hypogaea HOM05D007178 ORTHO05D009022 9.7e-12 73.6 73 54.8
Medtr8g006645 Medicago truncatula HOM05D007178 ORTHO05D009022 2.2e-11 72.4 54 64.8
ATR1098G109 Amborella trichopoda HOM05D007178 ORTHO05D009022 3.7e-11 71.6 43 76.7
Aa31LG6G1110 Aethionema arabicum HOM05D007178 ORTHO05D009022 4.8e-11 71.2 118 43.2
Zm00001eb307790 Zea mays HOM05D007178 ORTHO05D009022 4.8e-11 71.2 68 57.4
Os09g0569450 Oryza sativa ssp. japonica HOM05D007178 ORTHO05D009022 1.4e-10 69.7 89 50.6
FvH4_6g47640 Fragaria vesca HOM05D007178 ORTHO05D009022 1.2e-09 66.6 40 72.5
FvH4_3g19851 Fragaria vesca HOM05D007178 ORTHO05D009022 2.6e-09 65.5 40 70.0
FAN14G2280 Fragaria x ananassa HOM05D007178 ORTHO05D009022 3.4e-09 65.1 40 70.0
Ah.13g071740 Amaranthus hybridus HOM05D007178 ORTHO05D009022 7.6e-09 63.9 49 67.3
Actinidia33661 Actinidia chinensis HOM05D007178 ORTHO05D009022 2.5e-07 58.9 70 55.7
FAN12G1070 Fragaria x ananassa HOM05D007178 ORTHO05D009022 1.6e-06 56.2 40 65.0
Gohir.D07G160820 Gossypium hirsutum HOM05D007178 ORTHO05D009022 2.1e-06 55.8 32 75.0
SEGI_20805 Sequoiadendron giganteum HOM05D019012 ORTHO05D020434 7.9e-06 53.9 60 46.7


User provided reference genes

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