Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g022110.2 Solanum lycopersicum HOM05D001346 ORTHO05D001205 3.8e-66 255.0 157 100.0
Sopen08g007600 Solanum pennellii HOM05D001346 ORTHO05D001205 6.3e-61 237.7 149 100.0
Nitab4.5_0003279g0020 Nicotiana tabacum HOM05D001346 ORTHO05D001205 3.7e-37 158.7 162 73.5
Nitab4.5_0000087g0230 Nicotiana tabacum HOM05D001346 ORTHO05D001205 9.4e-25 117.5 128 75.8
Peaxi162Scf00071g00088 Petunia axillaris HOM05D001346 ORTHO05D001205 8.8e-23 110.9 120 59.2
vmacro13828 Vaccinium macrocarpon HOM05D001346 ORTHO05D001205 3.3e-17 92.4 162 45.7
Dinv00584 Davidia involucrata HOM05D001346 ORTHO05D001205 7.2e-17 91.3 169 41.4
DCAR_006652 Daucus carota HOM05D001346 ORTHO05D001205 1.6e-16 90.1 156 42.3
Dinv04732 Davidia involucrata HOM05D001346 ORTHO05D001205 3.6e-16 89.0 174 37.9
Rhsim07G0075400 Rhododendron simsii HOM05D001346 ORTHO05D001205 6.1e-16 88.2 170 43.5
PGSC0003DMG400019455 Solanum tuberosum HOM05D001346 ORTHO05D001205 8.0e-16 87.8 180 41.1
GSVIVG01021790001 Vitis vinifera HOM05D001346 ORTHO05D001205 1.8e-15 86.7 166 39.2
MSTRG.20444 Avicennia marina HOM05D001346 ORTHO05D001205 3.0e-15 85.9 191 35.6
SGA_v2.0_scaffold80G25906 Striga asiatica HOM05D001346 ORTHO05D001205 4.0e-15 85.5 159 40.3
Migut.N01912 Erythranthe guttata HOM05D001346 ORTHO05D001205 5.2e-15 85.1 162 45.7
Lj9A662G26 Lonicera japonica HOM05D001346 ORTHO05D001205 5.2e-15 85.1 154 52.6
Medtr1g080920 Medicago truncatula HOM05D001346 ORTHO05D001205 7.5e-14 81.3 148 39.9
Nitab4.5_0001592g0050 Nicotiana tabacum HOM05D001346 ORTHO05D001205 9.8e-14 80.9 177 39.0
CSS0049111 Camellia sinensis var. sinensis HOM05D001346 ORTHO05D001205 1.3e-13 80.5 180 38.9
Cpa.g.sc117.90 Carica papaya HOM05D001346 ORTHO05D001205 1.7e-13 80.1 180 36.1
Dinv10013 Davidia involucrata HOM05D001346 ORTHO05D001205 2.8e-13 79.3 170 38.2
Migut.B01086 Erythranthe guttata HOM05D001346 ORTHO05D001205 2.8e-13 79.3 191 37.7
MBI11_g15910_MAGBIO Magnolia biondii HOM05D001346 ORTHO05D001205 2.8e-13 79.3 162 37.7
Nitab4.5_0014012g0010 Nicotiana tabacum HOM05D001346 ORTHO05D001205 2.8e-13 79.3 177 37.9
Solyc01g097330.3 Solanum lycopersicum HOM05D001346 ORTHO05D001205 2.8e-13 79.3 184 41.8
Sopen01g041000 Solanum pennellii HOM05D001346 ORTHO05D001205 2.8e-13 79.3 185 42.2
Manes.08G134500 Manihot esculenta HOM05D001346 ORTHO05D001205 1.1e-12 77.4 178 36.0
RcHm_v2.0_Chr3g0451141 Rosa chinensis HOM05D001346 ORTHO05D001205 1.4e-12 77.0 170 36.5
TAR362G0578 Trochodendron aralioides HOM05D001346 ORTHO05D001205 1.8e-12 76.6 180 35.6
unitig_899.g15582 Utricularia gibba HOM05D001346 ORTHO05D001205 2.4e-12 76.3 152 38.2
TAR633G1863 Trochodendron aralioides HOM05D001346 ORTHO05D001205 4.1e-12 75.5 175 37.1
CiPaw.07G067200 Carya illinoinensis HOM05D001346 ORTHO05D001205 5.4e-12 75.1 197 33.5
Psat6g144640 Pisum sativum HOM05D001346 ORTHO05D001205 5.4e-12 75.1 156 37.8
Lj5g0014207 Lotus japonicus HOM05D001346 ORTHO05D001205 7.0e-12 74.7 159 35.8
Oeu038442.2 Olea europaea HOM05D001346 ORTHO05D001205 7.0e-12 74.7 190 33.7
QL03p025824 Quercus lobata HOM05D001346 ORTHO05D001205 7.0e-12 74.7 216 34.3
Phvul.007G187400 Phaseolus vulgaris HOM05D001346 ORTHO05D001205 9.2e-12 74.3 166 39.2
Actinidia18362 Actinidia chinensis HOM05D001346 ORTHO05D001205 1.6e-11 73.6 185 43.8
CiPaw.08G123700 Carya illinoinensis HOM05D001346 ORTHO05D001205 1.6e-11 73.6 191 35.1
Oeu016439.1 Olea europaea HOM05D001346 ORTHO05D001205 1.6e-11 73.6 170 34.1
Thecc.05G283600 Theobroma cacao HOM05D001346 ORTHO05D001205 1.6e-11 73.6 156 37.2
Hma1.2p1_0817F.1_g223100 Hydrangea macrophylla HOM05D001346 ORTHO05D001205 2.0e-11 73.2 178 50.6
Glyma.20G224500 Glycine max HOM05D001346 ORTHO05D001205 2.7e-11 72.8 166 43.4
MD04G1224400 Malus domestica HOM05D001346 ORTHO05D001205 3.5e-11 72.4 186 40.3
Sc09g0003910 Simmondsia chinensis HOM05D001346 ORTHO05D001205 3.5e-11 72.4 145 36.6
TWI12G0689 Tripterygium wilfordii HOM05D001346 ORTHO05D001205 4.5e-11 72.0 167 33.5
TWI56G0207 Tripterygium wilfordii HOM05D001346 ORTHO05D001205 4.5e-11 72.0 167 35.3
Cfa006423 Carpinus fangiana HOM05D001346 ORTHO05D001205 7.8e-11 71.2 183 34.4
Lalb_Chr06g0168061 Lupinus albus HOM05D001346 ORTHO05D001205 7.8e-11 71.2 169 33.1
QL03p026231 Quercus lobata HOM05D001346 ORTHO05D001205 7.8e-11 71.2 214 34.1
Gohir.A11G248500 Gossypium hirsutum HOM05D001346 ORTHO05D001205 1.0e-10 70.9 160 32.5
Lalb_Chr02g0148821 Lupinus albus HOM05D001346 ORTHO05D001205 1.0e-10 70.9 169 34.9
Prupe.6G343100 Prunus persica HOM05D001346 ORTHO05D001205 1.0e-10 70.9 191 40.8
Ca_10046_v3 Cicer arietinum L. HOM05D001346 ORTHO05D001205 1.3e-10 70.5 142 33.8
Cc02_g30660 Coffea canephora HOM05D001346 ORTHO05D001205 1.3e-10 70.5 192 32.3
Haze_04362 Corylus avellana HOM05D001346 ORTHO05D001205 1.3e-10 70.5 184 32.6
Gohir.A08G215500 Gossypium hirsutum HOM05D001346 ORTHO05D001205 1.7e-10 70.1 146 33.6
MSTRG.28020 Avicennia marina HOM05D001346 ORTHO05D001205 2.3e-10 69.7 157 38.9
FAN09G4362 Fragaria x ananassa HOM05D001346 ORTHO05D001205 2.3e-10 69.7 168 42.3
Glyma.10G162100 Glycine max HOM05D001346 ORTHO05D001205 2.3e-10 69.7 166 39.2
Peaxi162Scf00282g00338 Petunia axillaris HOM05D001346 ORTHO05D001205 2.9e-10 69.3 160 34.4
Oeu027468.1 Olea europaea HOM05D001346 ORTHO05D001205 6.6e-10 68.2 175 39.4
unitig_746.g26845 Utricularia gibba HOM05D001346 ORTHO05D001205 6.6e-10 68.2 163 35.6
FAN05G3321 Fragaria x ananassa HOM05D001346 ORTHO05D001205 8.6e-10 67.8 179 40.8
PGR004G2685 Punica granatum HOM05D001346 ORTHO05D001205 1.1e-09 67.4 200 31.0
CsaV3_2G004160 Cucumis sativus L. HOM05D001346 ORTHO05D001205 1.5e-09 67.0 178 32.6
Lj1g0027014 Lotus japonicus HOM05D001346 ORTHO05D001205 1.9e-09 66.6 143 35.7
HanXRQChr09g0258861 Helianthus annuus HOM05D001346 ORTHO05D001205 2.5e-09 66.2 169 36.1
Sc20g0000310 Simmondsia chinensis HOM05D001346 ORTHO05D001205 2.5e-09 66.2 135 31.9
Duzib128G1751 Durio zibethinus HOM05D001346 ORTHO05D001205 3.3e-09 65.9 162 34.6
Gohir.D08G232200 Gossypium hirsutum HOM05D001346 ORTHO05D001205 3.3e-09 65.9 140 33.6
Gorai.004G246700 Gossypium raimondii HOM05D001346 ORTHO05D001205 3.3e-09 65.9 140 33.6
Gorai.007G277300 Gossypium raimondii HOM05D001346 ORTHO05D001205 4.3e-09 65.5 145 33.8
Gohir.D11G259400 Gossypium hirsutum HOM05D001346 ORTHO05D001205 5.6e-09 65.1 145 33.1
Ah.04g162320 Amaranthus hybridus HOM05D001346 ORTHO05D001205 7.3e-09 64.7 150 33.3
Nn3g19494 Nelumbo nucifera HOM05D001346 ORTHO05D001205 7.3e-09 64.7 171 38.6
THA.LOC104820087 Tarenaya hassleriana HOM05D001346 ORTHO05D001205 9.5e-09 64.3 140 31.4
Eucgr.H04338 Eucalyptus grandis HOM05D001346 ORTHO05D001205 1.2e-08 63.9 193 33.2
Hund06969 Selenicereus undatus HOM05D001346 ORTHO05D001205 1.2e-08 63.9 168 32.7
Ah.06g192350 Amaranthus hybridus HOM05D001346 ORTHO05D001205 2.1e-08 63.2 161 32.3
MD12G1241100 Malus domestica HOM05D001346 ORTHO05D001205 2.1e-08 63.2 180 39.4
SalBow4G3295 Salvia bowleyana HOM05D001346 ORTHO05D001205 2.1e-08 63.2 150 34.7
Aqoxy5G00366 Aquilegia oxysepala HOM05D001346 ORTHO05D001205 2.8e-08 62.8 177 32.2
CDE06G1847 Ceratophyllum demersum HOM05D001346 ORTHO05D001205 3.6e-08 62.4 148 31.8
FvH4_6g02940 Fragaria vesca HOM05D001346 ORTHO05D001205 3.6e-08 62.4 168 39.9
MELO3C004378.2 Cucumis melo HOM05D001346 ORTHO05D001205 4.7e-08 62.0 181 31.5
MELO3C015377.2 Cucumis melo HOM05D001346 ORTHO05D001205 4.7e-08 62.0 167 32.9
FAN14G2404 Fragaria x ananassa HOM05D001346 ORTHO05D001205 4.7e-08 62.0 170 40.6
HanXRQChr15g0486601 Helianthus annuus HOM05D001346 ORTHO05D001205 4.7e-08 62.0 141 32.6
Lsat_1_v5_gn_8_115900 Lactuca sativa HOM05D001346 ORTHO05D001205 4.7e-08 62.0 59 57.6
TPR.G12949 Trifolium pratense HOM05D001346 ORTHO05D001205 4.7e-08 62.0 152 34.9
SGA_v2.0_scaffold81G26089 Striga asiatica HOM05D001346 ORTHO05D001205 6.1e-08 61.6 132 41.7
VMungo0720G1467 Vigna mungo HOM05D001346 ORTHO05D001205 6.1e-08 61.6 164 32.3
Ciclev10001051m.g Citrus clementina HOM05D001346 ORTHO05D001205 8.0e-08 61.2 175 32.6
Sed0027418 Sechium edule HOM05D001346 ORTHO05D001205 8.0e-08 61.2 173 34.1
ClCG02G016610 Citrullus lanatus HOM05D001346 ORTHO05D001205 1.0e-07 60.8 168 34.5
ECA232G3692 Erigeron canadensis HOM05D001346 ORTHO05D000001 1.0e-07 60.8 83 47.0
Sabra13G0037600 Salix brachista HOM05D001346 ORTHO05D001205 1.0e-07 60.8 172 36.0
Actinidia32804 Actinidia chinensis HOM05D001346 ORTHO05D001205 1.8e-07 60.1 139 34.5
CsaV3_1G039550 Cucumis sativus L. HOM05D001346 ORTHO05D001205 1.8e-07 60.1 166 34.3
Sed0011981 Sechium edule HOM05D001346 ORTHO05D001205 1.8e-07 60.1 162 33.3
THA.LOC104802830 Tarenaya hassleriana HOM05D001346 ORTHO05D001205 1.8e-07 60.1 126 33.3
CDE02G2892 Ceratophyllum demersum HOM05D001346 ORTHO05D001205 2.3e-07 59.7 148 30.4
MBI04_g08414_MAGBIO Magnolia biondii HOM05D001346 ORTHO05D001205 3.0e-07 59.3 158 32.3
Potri.013G040700 Populus trichocarpa HOM05D001346 ORTHO05D001205 3.0e-07 59.3 59 52.5
ClCG03G016420 Citrullus lanatus HOM05D001346 ORTHO05D001205 4.0e-07 58.9 174 31.0
Oeu002658.2 Olea europaea HOM05D001346 ORTHO05D001205 4.0e-07 58.9 166 47.0
Sp2g20050 Schrenkiella parvula HOM05D001346 ORTHO05D001205 4.0e-07 58.9 145 33.1
Manes.09G153300 Manihot esculenta HOM05D001346 ORTHO05D001205 6.8e-07 58.2 191 33.5
ATR0665G150 Amborella trichopoda HOM05D001346 ORTHO05D001205 1.2e-06 57.4 141 37.6
PSO210G0790 Papaver somniferum HOM05D001346 ORTHO05D001205 1.2e-06 57.4 147 33.3
PSO832G4214 Papaver somniferum HOM05D001346 ORTHO05D001205 1.2e-06 57.4 142 31.7
Potri.005G217500 Populus trichocarpa HOM05D001346 ORTHO05D001205 1.2e-06 57.4 170 29.4
Thhalv10004611m.g Eutrema salsugineum HOM05D001346 ORTHO05D001205 1.5e-06 57.0 141 31.2
Hund22114 Selenicereus undatus HOM05D001346 ORTHO05D001205 2.0e-06 56.6 168 29.2
arahy.Tifrunner.gnm1.ann1.4SA7RY Arachis hypogaea HOM05D001346 ORTHO05D001205 2.6e-06 56.2 176 31.8
arahy.Tifrunner.gnm1.ann1.EQL16Q Arachis hypogaea HOM05D001346 ORTHO05D001205 5.8e-06 55.1 176 33.0
PSO210G6449 Papaver somniferum HOM05D001346 ORTHO05D001205 5.8e-06 55.1 164 28.0
VMungo0540G0989 Vigna mungo HOM05D001346 ORTHO05D001205 5.8e-06 55.1 141 31.2
FAN27G3194 Fragaria x ananassa HOM05D001346 ORTHO05D001205 7.5e-06 54.7 160 28.1
Nn1g02540 Nelumbo nucifera HOM05D001346 ORTHO05D001205 7.5e-06 54.7 182 31.9
PSO461G0023 Papaver somniferum HOM05D001346 ORTHO05D001205 7.5e-06 54.7 164 28.0
Sed0015023 Sechium edule HOM05D001346 ORTHO05D001205 7.5e-06 54.7 140 34.3


User provided reference genes

Program Settings