Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g016670.3 Solanum lycopersicum HOM05D005618 ORTHO05D007278 6.4e-120 434.1 220 100.0
Sopen08g007080 Solanum pennellii HOM05D005618 ORTHO05D007278 4.3e-116 421.4 220 97.3
PGSC0003DMG400012093 Solanum tuberosum HOM05D005618 ORTHO05D007278 9.9e-113 410.2 220 94.5
CAN.G50.16 Capsicum annuum HOM05D005618 ORTHO05D007278 5.4e-103 377.9 220 88.6
Nitab4.5_0006887g0020 Nicotiana tabacum HOM05D005618 ORTHO05D007278 1.1e-100 370.2 220 85.5
Peaxi162Scf01211g00117 Petunia axillaris HOM05D005618 ORTHO05D007278 1.1e-95 353.6 264 70.5
CANSAT35G0334 Cannabis sativa HOM05D005618 ORTHO05D007278 7.6e-89 330.9 216 73.6
Dinv32254 Davidia involucrata HOM05D005618 ORTHO05D007278 2.2e-88 329.3 216 74.5
COL.COLO4_31069 Corchorus olitorius HOM05D005618 ORTHO05D007278 2.9e-88 328.9 216 74.1
Thecc.06G150300 Theobroma cacao HOM05D005618 ORTHO05D007278 2.9e-88 328.9 222 73.0
HanXRQChr15g0480861 Helianthus annuus HOM05D005618 ORTHO05D007278 4.9e-88 328.2 216 73.6
Nitab4.5_0000420g0030 Nicotiana tabacum HOM05D005618 ORTHO05D007278 1.1e-87 327.0 220 78.2
Cc00_g08440 Coffea canephora HOM05D005618 ORTHO05D007278 4.2e-87 325.1 216 72.7
TWI53G0952 Tripterygium wilfordii HOM05D005618 ORTHO05D007278 5.5e-87 324.7 216 73.1
Gohir.A10G041000 Gossypium hirsutum HOM05D005618 ORTHO05D007278 7.1e-87 324.3 220 73.2
Lalb_Chr09g0328651 Lupinus albus HOM05D005618 ORTHO05D007278 1.2e-86 323.6 213 73.7
CiPaw.09G123100 Carya illinoinensis HOM05D005618 ORTHO05D007278 1.6e-86 323.2 216 71.3
Hma1.2p1_0053F.1_g030930 Hydrangea macrophylla HOM05D005618 ORTHO05D007278 2.1e-86 322.8 217 73.3
CiPaw.10G091700 Carya illinoinensis HOM05D005618 ORTHO05D007278 2.7e-86 322.4 216 71.3
Sc17g0004900 Simmondsia chinensis HOM05D005618 ORTHO05D007278 2.7e-86 322.4 217 73.3
MSTRG.7487 Avicennia marina HOM05D005618 ORTHO05D007278 3.5e-86 322.0 224 70.5
Glyma.20G018500 Glycine max HOM05D005618 ORTHO05D007278 3.5e-86 322.0 216 72.2
arahy.Tifrunner.gnm1.ann1.LME4NB Arachis hypogaea HOM05D005618 ORTHO05D007278 6.0e-86 321.2 216 70.8
Duzib235G0110 Durio zibethinus HOM05D005618 ORTHO05D007278 1.0e-85 320.5 222 72.1
Eucgr.D00295 Eucalyptus grandis HOM05D005618 ORTHO05D007278 1.3e-85 320.1 216 72.7
Duzib192G0044 Durio zibethinus HOM05D005618 ORTHO05D007278 2.3e-85 319.3 222 71.6
arahy.Tifrunner.gnm1.ann1.R3FQ90 Arachis hypogaea HOM05D005618 ORTHO05D007278 3.0e-85 318.9 216 70.4
CDE02G0590 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 5.1e-85 318.2 215 72.6
SGA_v2.0_scaffold1G00178 Striga asiatica HOM05D005618 ORTHO05D007278 5.1e-85 318.2 214 73.8
Lj4g0005080 Lotus japonicus HOM05D005618 ORTHO05D007278 6.7e-85 317.8 216 70.4
DCAR_003916 Daucus carota HOM05D005618 ORTHO05D007278 8.7e-85 317.4 218 68.8
Gohir.D10G041800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 8.7e-85 317.4 220 72.7
Glyma.07G220200 Glycine max HOM05D005618 ORTHO05D007278 1.1e-84 317.0 215 71.6
VMungo0251G3758 Vigna mungo HOM05D005618 ORTHO05D007278 1.1e-84 317.0 216 70.4
MSTRG.16244 Avicennia marina HOM05D005618 ORTHO05D007278 1.5e-84 316.6 223 69.5
Gohir.A05G148300 Gossypium hirsutum HOM05D005618 ORTHO05D007278 1.5e-84 316.6 223 71.3
QL05p057939 Quercus lobata HOM05D005618 ORTHO05D007278 1.9e-84 316.2 216 69.9
Hund21546 Selenicereus undatus HOM05D005618 ORTHO05D007278 1.9e-84 316.2 216 70.8
CDE06G1306 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 2.5e-84 315.8 215 72.6
Lsat_1_v5_gn_7_28281 Lactuca sativa HOM05D005618 ORTHO05D007278 2.5e-84 315.8 216 70.8
Phvul.002G096900 Phaseolus vulgaris HOM05D005618 ORTHO05D007278 3.3e-84 315.5 216 69.9
THA.LOC104814300 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 3.3e-84 315.5 216 70.8
Gorai.011G044400 Gossypium raimondii HOM05D005618 ORTHO05D007278 5.6e-84 314.7 223 70.4
Manes.17G070300 Manihot esculenta HOM05D005618 ORTHO05D007278 5.6e-84 314.7 216 72.7
PGR083G1302 Punica granatum HOM05D005618 ORTHO05D007278 7.4e-84 314.3 216 72.7
TPR.G38285 Trifolium pratense HOM05D005618 ORTHO05D007278 7.4e-84 314.3 217 71.4
Ca_18751_v3 Cicer arietinum L. HOM05D005618 ORTHO05D007278 1.6e-83 313.2 217 70.0
Manes.15G121800 Manihot esculenta HOM05D005618 ORTHO05D007278 3.7e-83 312.0 217 70.5
TAR626G0061 Trochodendron aralioides HOM05D005618 ORTHO05D007278 3.7e-83 312.0 216 71.8
Lalb_Chr05g0219641 Lupinus albus HOM05D005618 ORTHO05D007278 4.8e-83 311.6 217 69.6
Nn4g26571 Nelumbo nucifera HOM05D005618 ORTHO05D007278 4.8e-83 311.6 216 70.4
Cfa000939 Carpinus fangiana HOM05D005618 ORTHO05D007278 6.2e-83 311.2 246 63.4
Gorai.009G154900 Gossypium raimondii HOM05D005618 ORTHO05D007278 1.1e-82 310.5 223 70.4
Migut.M00907 Erythranthe guttata HOM05D005618 ORTHO05D007278 1.4e-82 310.1 215 71.2
GSVIVG01021471001 Vitis vinifera HOM05D005618 ORTHO05D007278 1.8e-82 309.7 216 69.9
Ciclev10016692m.g Citrus clementina HOM05D005618 ORTHO05D007278 6.9e-82 307.8 216 71.8
FAN25G1374 Fragaria x ananassa HOM05D005618 ORTHO05D007278 6.9e-82 307.8 217 69.1
Gohir.D05G150800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 9.0e-82 307.4 226 68.6
Psat7g130040 Pisum sativum HOM05D005618 ORTHO05D007278 1.5e-81 306.6 216 70.4
AT1G30070 Arabidopsis thaliana HOM05D005618 ORTHO05D007278 2.6e-81 305.8 220 68.2
FAN11G3487 Fragaria x ananassa HOM05D005618 ORTHO05D007278 2.6e-81 305.8 217 68.7
THA.LOC104820649 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 2.6e-81 305.8 215 68.8
FvH4_3g05510 Fragaria vesca HOM05D005618 ORTHO05D007278 3.4e-81 305.4 217 68.2
Potri.011G085100 Populus trichocarpa HOM05D005618 ORTHO05D007278 3.4e-81 305.4 219 68.0
FAN16G1298 Fragaria x ananassa HOM05D005618 ORTHO05D007278 4.5e-81 305.1 217 68.7
Haze_05608 Corylus avellana HOM05D005618 ORTHO05D007278 5.8e-81 304.7 205 70.7
Sed0020286 Sechium edule HOM05D005618 ORTHO05D007278 7.6e-81 304.3 219 68.9
BcaB07g32606 Brassica carinata HOM05D005618 ORTHO05D007278 1.3e-80 303.5 220 68.2
Oeu034148.1 Olea europaea HOM05D005618 ORTHO05D007278 1.3e-80 303.5 226 65.9
SalBow8G3565 Salvia bowleyana HOM05D005618 ORTHO05D007278 1.3e-80 303.5 226 66.4
ClCG03G006840 Citrullus lanatus HOM05D005618 ORTHO05D007278 3.8e-80 302.0 217 69.1
RcHm_v2.0_Chr5g0014231 Rosa chinensis HOM05D005618 ORTHO05D007278 4.9e-80 301.6 218 68.8
CsaV3_1G032420 Cucumis sativus L. HOM05D005618 ORTHO05D007278 6.5e-80 301.2 217 69.6
TAR624G0623 Trochodendron aralioides HOM05D005618 ORTHO05D007278 6.5e-80 301.2 216 69.9
BcaC05g27023 Brassica carinata HOM05D005618 ORTHO05D007278 8.4e-80 300.8 220 66.8
C05p28860 Brassica napus HOM05D005618 ORTHO05D007278 8.4e-80 300.8 220 66.8
BolC5t31605H Brassica oleracea HOM05D005618 ORTHO05D007278 8.4e-80 300.8 220 66.8
FAN21G3768 Fragaria x ananassa HOM05D005618 ORTHO05D007278 1.1e-79 300.4 217 67.7
Oeu052366.1 Olea europaea HOM05D005618 ORTHO05D007278 1.4e-79 300.1 236 63.1
Sabra11G0068900 Salix brachista HOM05D005618 ORTHO05D007278 1.4e-79 300.1 219 67.1
Lj2A305G54 Lonicera japonica HOM05D005618 ORTHO05D007278 2.5e-79 299.3 216 66.2
Sabra11G0067000 Salix brachista HOM05D005618 ORTHO05D007278 3.2e-79 298.9 219 66.7
A09p36460 Brassica napus HOM05D005618 ORTHO05D007278 5.5e-79 298.1 220 66.8
BraA09t39168Z Brassica rapa HOM05D005618 ORTHO05D007278 5.5e-79 298.1 220 66.8
AL1G43960 Arabidopsis lyrata HOM05D005618 ORTHO05D007278 7.1e-79 297.7 220 66.8
Sp1g25930 Schrenkiella parvula HOM05D005618 ORTHO05D007278 7.1e-79 297.7 219 65.8
SGA_v2.0_scaffold333G48991 Striga asiatica HOM05D005618 ORTHO05D007278 1.2e-78 297.0 220 69.1
Thhalv10008455m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 3.5e-78 295.4 220 67.3
MELO3C002736.2 Cucumis melo HOM05D005618 ORTHO05D007278 4.6e-78 295.0 217 66.8
AUR62030187 Chenopodium quinoa HOM05D005618 ORTHO05D007278 6.0e-78 294.7 217 66.4
AUR62002738 Chenopodium quinoa HOM05D005618 ORTHO05D007278 7.9e-78 294.3 217 66.4
Carub.0001s2829 Capsella rubella HOM05D005618 ORTHO05D007278 5.1e-77 291.6 217 67.3
ECA236G2996 Erigeron canadensis HOM05D005618 ORTHO05D007278 6.7e-77 291.2 224 64.3
MD05G1283600 Malus domestica HOM05D005618 ORTHO05D007278 6.7e-77 291.2 209 71.3
vmacro10962 Vaccinium macrocarpon HOM05D005618 ORTHO05D007278 4.3e-76 288.5 256 59.4
Aa31LG6G5600 Aethionema arabicum HOM05D005618 ORTHO05D007278 5.7e-76 288.1 229 63.8
Atru.chr10.1223 Acer truncatum HOM05D005618 ORTHO05D007278 8.2e-75 284.3 200 67.5
PSO675G5881 Papaver somniferum HOM05D005618 ORTHO05D007278 1.4e-74 283.5 242 62.4
CARHR029340 Cardamine hirsuta HOM05D005618 ORTHO05D007278 3.1e-74 282.3 218 63.8
Ah.09g232560 Amaranthus hybridus HOM05D005618 ORTHO05D007278 4.1e-74 282.0 249 59.4
HPP92_020290 Vanilla planifolia HOM05D005618 ORTHO05D007278 9.0e-74 280.8 216 64.8
ATR0730G012 Amborella trichopoda HOM05D005618 ORTHO05D007278 1.2e-73 280.4 213 63.4
Aqoxy1G01706 Aquilegia oxysepala HOM05D005618 ORTHO05D007278 4.5e-73 278.5 224 63.4
SEGI_02039 Sequoiadendron giganteum HOM05D005618 ORTHO05D007278 5.0e-72 275.0 220 61.4
CSS0012983 Camellia sinensis var. sinensis HOM05D005618 ORTHO05D007278 8.5e-72 274.2 188 70.7
Zm00001eb370650 Zea mays HOM05D005618 ORTHO05D007278 8.5e-72 274.2 215 60.5
Actinidia39574 Actinidia chinensis HOM05D005618 ORTHO05D007278 1.4e-71 273.5 158 80.4
MD10G1261800 Malus domestica HOM05D005618 ORTHO05D007278 4.2e-71 271.9 209 67.0
Os01g0757500 Oryza sativa ssp. japonica HOM05D005618 ORTHO05D007278 5.5e-71 271.6 227 59.9
Medtr4g084250 Medicago truncatula HOM05D005618 ORTHO05D007278 1.8e-69 266.5 219 62.6
MBI10_g30420_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 3.9e-69 265.4 185 68.6
Zm00001eb152680 Zea mays HOM05D005618 ORTHO05D007278 5.1e-69 265.0 215 60.5
Nn3g20783 Nelumbo nucifera HOM05D005618 ORTHO05D007278 6.9e-66 254.6 183 68.9
AUR62026670 Chenopodium quinoa HOM05D005618 ORTHO05D007278 4.2e-63 245.4 194 64.4
Mapoly0148s0015 Marchantia polymorpha HOM05D005618 ORTHO05D007278 6.7e-61 238.0 239 51.5
Rhsim02G0158200 Rhododendron simsii HOM05D005618 ORTHO05D007278 4.4e-60 235.3 190 62.1
Pp3c4_13920 Physcomitrium patens HOM05D005618 ORTHO05D007278 4.1e-58 228.8 219 54.8
Thhalv10002717m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 1.9e-55 219.9 131 76.3
Cpa.g.c46789 Carica papaya HOM05D005618 ORTHO05D007278 3.9e-53 212.2 120 80.8
Actinidia07695 Actinidia chinensis HOM05D005618 ORTHO05D007278 8.8e-53 211.1 219 53.4
unitig_32.g11444 Utricularia gibba HOM05D005618 ORTHO05D007278 5.3e-50 201.8 114 81.6
AagrBONN_evm.TU.Sc2ySwM_344.1819 Anthoceros agrestis HOM05D005618 ORTHO05D007278 7.0e-50 201.4 238 46.2
SMO364G0114 Selaginella moellendorffii HOM05D005618 ORTHO05D007278 1.2e-46 190.7 206 49.5
Prupe.4G081000 Prunus persica HOM05D005618 ORTHO05D007278 6.7e-45 184.9 249 41.8
AUR62040575 Chenopodium quinoa HOM05D005618 ORTHO05D007278 4.1e-42 175.6 172 54.7
MBI16_g34289_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 6.8e-37 158.3 100 72.0
CBR_g22260 Chara braunii HOM05D005618 ORTHO05D007278 7.5e-36 154.8 252 36.1
SHI24907 Sapria himalayana HOM05D005618 ORTHO05D007278 5.4e-34 148.7 178 49.4
PSO541G3455 Papaver somniferum HOM05D005618 ORTHO05D007278 8.3e-27 124.8 245 35.9
MBI18_g05573_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 2.0e-12 77.0 42 83.3
SHI24908 Sapria himalayana HOM05D005618 ORTHO05D007278 3.7e-11 72.8 84 50.0
SMO353G0169 Selaginella moellendorffii HOM05D005618 ORTHO05D001361 2.0e-09 67.0 44 70.5
Aqoxy7G01552 Aquilegia oxysepala HOM05D005618 ORTHO05D007278 4.6e-09 65.9 36 77.8
MBI18_g05572_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 1.5e-07 60.8 43 65.1
SMO364G0864 Selaginella moellendorffii HOM05D005618 ORTHO05D374196 1.9e-07 60.5 207 28.0
AT1G30060 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 9.5e-07 58.2 27 100.0


User provided reference genes

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