Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g016415.1 Solanum lycopersicum HOM05D007802 ORTHO05D009879 6.8e-31 136.7 71 100.0
Sopen08g006790 Solanum pennellii HOM05D007802 ORTHO05D009879 9.8e-30 132.9 71 97.2
Nitab4.5_0003852g0060 Nicotiana tabacum HOM05D007802 ORTHO05D009879 4.3e-17 90.9 70 68.6
Nitab4.5_0001601g0070 Nicotiana tabacum HOM05D007802 ORTHO05D009879 7.3e-17 90.1 70 68.6
FvH4_5g34160 Fragaria vesca HOM05D007802 ORTHO05D009879 2.9e-13 78.2 69 58.0
AL4G35740 Arabidopsis lyrata HOM05D007802 ORTHO05D009879 4.9e-13 77.4 58 67.2
Carub.0004s2044 Capsella rubella HOM05D007802 ORTHO05D009879 8.3e-13 76.6 58 67.2
AT2G38465 Arabidopsis thaliana HOM05D007802 ORTHO05D009879 1.1e-12 76.3 58 65.5
CARHR133150 Cardamine hirsuta HOM05D007802 ORTHO05D009879 4.1e-12 74.3 67 61.2
Thhalv10017501m.g Eutrema salsugineum HOM05D007802 ORTHO05D009879 4.1e-12 74.3 67 61.2
THA.LOC104806901 Tarenaya hassleriana HOM05D007802 ORTHO05D009879 7.1e-12 73.6 62 59.7
Atru.chr13.972 Acer truncatum HOM05D007802 ORTHO05D009879 1.2e-11 72.8 69 55.1
BcaB02g09173 Brassica carinata HOM05D007802 ORTHO05D009879 1.2e-11 72.8 67 59.7
QL09p018673 Quercus lobata HOM05D007802 ORTHO05D009879 2.1e-11 72.0 66 62.1
A04p29410 Brassica napus HOM05D007802 ORTHO05D009879 2.7e-11 71.6 67 59.7
RcHm_v2.0_Chr7g0233751 Rosa chinensis HOM05D007802 ORTHO05D009879 3.5e-11 71.2 69 55.1
BcaC02g11998 Brassica carinata HOM05D007802 ORTHO05D009879 6.0e-11 70.5 67 58.2
C07p40270 Brassica napus HOM05D007802 ORTHO05D009879 6.0e-11 70.5 67 58.2
BolC4t22496H Brassica oleracea HOM05D007802 ORTHO05D009879 6.0e-11 70.5 67 58.2
BraA05t19725Z Brassica rapa HOM05D007802 ORTHO05D009879 6.0e-11 70.5 67 58.2
Dinv42589 Davidia involucrata HOM05D007802 ORTHO05D009879 6.0e-11 70.5 71 54.9
TWI56G1155 Tripterygium wilfordii HOM05D007802 ORTHO05D009879 7.8e-11 70.1 66 57.6
ClCG08G011540 Citrullus lanatus HOM05D007802 ORTHO05D009879 1.0e-10 69.7 65 58.5
FvH4_4g29130 Fragaria vesca HOM05D007802 ORTHO05D009879 1.0e-10 69.7 67 55.2
FAN12G4209 Fragaria x ananassa HOM05D007802 ORTHO05D009879 1.0e-10 69.7 67 55.2
C04p09060 Brassica napus HOM05D007802 ORTHO05D009879 1.3e-10 69.3 67 56.7
Ciclev10002961m.g Citrus clementina HOM05D007802 ORTHO05D009879 1.3e-10 69.3 69 53.6
Cc10_g08360 Coffea canephora HOM05D007802 ORTHO05D009879 1.7e-10 68.9 68 54.4
A05p07580 Brassica napus HOM05D007802 ORTHO05D009879 2.3e-10 68.6 67 56.7
CiPaw.08G057300 Carya illinoinensis HOM05D007802 ORTHO05D009879 2.3e-10 68.6 69 53.6
GSVIVG01009214001 Vitis vinifera HOM05D007802 ORTHO05D009879 2.3e-10 68.6 61 60.7
BolC7t44562H Brassica oleracea HOM05D007802 ORTHO05D009879 3.0e-10 68.2 67 56.7
Cpa.g.sc21.44 Carica papaya HOM05D007802 ORTHO05D009879 3.9e-10 67.8 70 51.4
BcaB06g29053 Brassica carinata HOM05D007802 ORTHO05D009879 5.1e-10 67.4 67 53.7
Cfa013816 Carpinus fangiana HOM05D007802 ORTHO05D009879 5.1e-10 67.4 69 52.2
Manes.18G057100 Manihot esculenta HOM05D007802 ORTHO05D009879 8.6e-10 66.6 69 52.2
Prupe.1G536500 Prunus persica HOM05D007802 ORTHO05D009879 1.5e-09 65.9 69 50.7
TAR628G0546 Trochodendron aralioides HOM05D007802 ORTHO05D009879 1.5e-09 65.9 68 54.4
BcaNung02098 Brassica carinata HOM05D007802 ORTHO05D009879 1.9e-09 65.5 67 55.2
MD08G1204900 Malus domestica HOM05D007802 ORTHO05D009879 2.5e-09 65.1 69 50.7
Glyma.02G216200 Glycine max HOM05D007802 ORTHO05D009879 4.3e-09 64.3 71 49.3
Sed0007651 Sechium edule HOM05D007802 ORTHO05D009879 5.6e-09 63.9 64 56.2
Aa31LG1G14150 Aethionema arabicum HOM05D007802 ORTHO05D009879 7.3e-09 63.5 65 53.8
CSS0046125 Camellia sinensis var. sinensis HOM05D007802 ORTHO05D009879 9.5e-09 63.2 70 50.0
Haze_22490 Corylus avellana HOM05D007802 ORTHO05D009879 1.2e-08 62.8 69 47.8
MELO3C011071.2 Cucumis melo HOM05D007802 ORTHO05D009879 1.2e-08 62.8 63 55.6
FAN08G3003 Fragaria x ananassa HOM05D007802 ORTHO05D009879 1.2e-08 62.8 98 40.8
FAN18G1081 Fragaria x ananassa HOM05D007802 ORTHO05D009879 1.2e-08 62.8 98 40.8
Oeu040885.1 Olea europaea HOM05D007802 ORTHO05D009879 1.6e-08 62.4 66 56.1
MD08G1204300 Malus domestica HOM05D007802 ORTHO05D009879 2.1e-08 62.0 70 47.1
Rhsim07G0213800 Rhododendron simsii HOM05D007802 ORTHO05D009879 2.1e-08 62.0 71 47.9
Eucgr.F00437 Eucalyptus grandis HOM05D007802 ORTHO05D009879 3.6e-08 61.2 62 51.6
SalBow7G0598 Salvia bowleyana HOM05D007802 ORTHO05D009879 4.7e-08 60.8 64 51.6
Sp4g20790 Schrenkiella parvula HOM05D007802 ORTHO05D009879 4.7e-08 60.8 56 62.5
Phvul.008G183400 Phaseolus vulgaris HOM05D007802 ORTHO05D009879 8.1e-08 60.1 70 47.1
arahy.Tifrunner.gnm1.ann1.6VNW8E Arachis hypogaea HOM05D007802 ORTHO05D009879 1.4e-07 59.3 68 45.6
AUR62014370 Chenopodium quinoa HOM05D007802 ORTHO05D009879 2.4e-07 58.5 70 45.7
Lalb_Chr17g0344631 Lupinus albus HOM05D007802 ORTHO05D009879 2.4e-07 58.5 71 46.5
MBI16_g07278_MAGBIO Magnolia biondii HOM05D007802 ORTHO05D009879 2.4e-07 58.5 66 53.0
Nn5g29812 Nelumbo nucifera HOM05D007802 ORTHO05D009879 2.4e-07 58.5 66 45.5
COL.COLO4_35287 Corchorus olitorius HOM05D007802 ORTHO05D009879 3.1e-07 58.2 69 40.6
SEGI_04889 Sequoiadendron giganteum HOM05D007802 ORTHO05D009879 4.0e-07 57.8 63 49.2
TPR.G38823 Trifolium pratense HOM05D007802 ORTHO05D009879 4.0e-07 57.8 66 48.5
HPP92_025782 Vanilla planifolia HOM05D007802 ORTHO05D009879 4.0e-07 57.8 66 45.5
Gorai.009G227900 Gossypium raimondii HOM05D007802 ORTHO05D009879 5.2e-07 57.4 71 45.1
Gohir.D05G220800 Gossypium hirsutum HOM05D007802 ORTHO05D009879 6.8e-07 57.0 71 45.1
SEGI_40405 Sequoiadendron giganteum HOM05D007802 ORTHO05D009879 8.9e-07 56.6 63 49.2
Thecc.08G074100 Theobroma cacao HOM05D007802 ORTHO05D009879 8.9e-07 56.6 69 43.5
FAN07G2104 Fragaria x ananassa HOM05D007802 ORTHO05D009879 1.2e-06 56.2 57 49.1
AUR62019113 Chenopodium quinoa HOM05D007802 ORTHO05D009879 2.0e-06 55.5 70 44.3
Sabra02G0086800 Salix brachista HOM05D007802 ORTHO05D009879 2.0e-06 55.5 69 44.9
ATR0767G120 Amborella trichopoda HOM05D007802 ORTHO05D009879 7.6e-06 53.5 56 51.8
Medtr5g066760 Medicago truncatula HOM05D007802 ORTHO05D009879 7.6e-06 53.5 57 50.9
CANSAT78G0113 Cannabis sativa HOM05D007802 ORTHO05D009879 9.9e-06 53.1 66 47.0
Ca_05474_v3 Cicer arietinum L. HOM05D007802 ORTHO05D009879 9.9e-06 53.1 64 45.3
DCAR_019323 Daucus carota HOM05D007802 ORTHO05D009879 9.9e-06 53.1 66 42.4
Zm00001eb388760 Zea mays HOM05D007802 ORTHO05D009879 9.9e-06 53.1 53 54.7


User provided reference genes

Program Settings