Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g015940.3 Solanum lycopersicum HOM05D004379 ORTHO05D005186 1.1e-59 233.0 110 100.0
Sopen08g006200 Solanum pennellii HOM05D004379 ORTHO05D005186 5.2e-54 214.2 102 99.0
PGSC0003DMG401021955 Solanum tuberosum HOM05D004379 ORTHO05D005186 8.9e-46 186.8 113 85.0
Nitab4.5_0001597g0040 Nicotiana tabacum HOM05D004379 ORTHO05D005186 3.0e-41 171.8 113 73.5
Peaxi162Scf00785g00321 Petunia axillaris HOM05D004379 ORTHO05D005186 2.7e-26 122.1 118 58.5
Nitab4.5_0000209g0140 Nicotiana tabacum HOM05D004379 ORTHO05D005186 8.1e-23 110.5 112 53.6
Nitab4.5_0006708g0030 Nicotiana tabacum HOM05D004379 ORTHO05D005186 8.9e-22 107.1 114 54.4
Thecc.06G022000 Theobroma cacao HOM05D004379 ORTHO05D005186 6.0e-18 94.4 112 43.8
Actinidia08802 Actinidia chinensis HOM05D004379 ORTHO05D005186 1.7e-17 92.8 113 46.0
TAR383G0091 Trochodendron aralioides HOM05D004379 ORTHO05D005186 2.5e-16 89.0 110 42.7
Glyma.08G212100 Glycine max HOM05D004379 ORTHO05D005186 3.3e-16 88.6 96 49.0
CANSAT56G1089 Cannabis sativa HOM05D004379 ORTHO05D005186 1.2e-15 86.7 112 42.9
Gohir.D10G075800 Gossypium hirsutum HOM05D004379 ORTHO05D005186 1.2e-15 86.7 103 48.5
Gorai.011G083500 Gossypium raimondii HOM05D004379 ORTHO05D005186 1.2e-15 86.7 103 48.5
Nn8g39475 Nelumbo nucifera HOM05D004379 ORTHO05D005186 2.1e-15 85.9 112 45.5
Sed0025536 Sechium edule HOM05D004379 ORTHO05D005186 2.8e-15 85.5 115 47.0
Gohir.A10G074000 Gossypium hirsutum HOM05D004379 ORTHO05D005186 3.6e-15 85.1 107 45.8
Nn2g12051 Nelumbo nucifera HOM05D004379 ORTHO05D005186 3.6e-15 85.1 61 57.4
TPR.G38692 Trifolium pratense HOM05D004379 ORTHO05D005186 4.7e-15 84.7 115 42.6
Actinidia15991 Actinidia chinensis HOM05D004379 ORTHO05D005186 6.2e-15 84.3 66 56.1
Atru.chr7.1137 Acer truncatum HOM05D004379 ORTHO05D005186 8.1e-15 84.0 70 54.3
CsaV3_7G032450 Cucumis sativus L. HOM05D004379 ORTHO05D005186 8.1e-15 84.0 65 53.8
MELO3C029250.2 Cucumis melo HOM05D004379 ORTHO05D005186 1.1e-14 83.6 65 53.8
MBI04_g29349_MAGBIO Magnolia biondii HOM05D004379 ORTHO05D005186 1.1e-14 83.6 61 55.7
Solyc07g008205.1 Solanum lycopersicum HOM05D004379 ORTHO05D005186 1.1e-14 83.6 95 40.0
Rhsim08G0213700 Rhododendron simsii HOM05D004379 ORTHO05D005186 1.4e-14 83.2 115 41.7
Sabra18G0111000 Salix brachista HOM05D001818 ORTHO05D001780 1.4e-14 83.2 113 41.6
EL10Ac9g21909 Beta vulgaris HOM05D004379 ORTHO05D005186 1.8e-14 82.8 67 59.7
Thecc.09G025200 Theobroma cacao HOM05D004379 ORTHO05D005186 1.8e-14 82.8 114 40.4
Duzib235G0719 Durio zibethinus HOM05D004379 ORTHO05D005186 2.4e-14 82.4 106 41.5
MD17G1210000 Malus domestica HOM05D004379 ORTHO05D005186 2.4e-14 82.4 62 56.5
Prupe.3G085300 Prunus persica HOM05D004379 ORTHO05D005186 2.4e-14 82.4 62 56.5
CSS0000383 Camellia sinensis var. sinensis HOM05D004379 ORTHO05D005186 3.1e-14 82.0 113 41.6
Duzib192G0219 Durio zibethinus HOM05D004379 ORTHO05D005186 3.1e-14 82.0 62 58.1
Potri.018G130700 Populus trichocarpa HOM05D004379 ORTHO05D005186 3.1e-14 82.0 114 41.2
Lj3g0013777 Lotus japonicus HOM05D004379 ORTHO05D005186 4.0e-14 81.6 63 61.9
Lj4g0010177 Lotus japonicus HOM05D004379 ORTHO05D005186 4.0e-14 81.6 96 43.8
CsaV3_4G001570 Cucumis sativus L. HOM05D004379 ORTHO05D005186 5.2e-14 81.3 100 46.0
Glyma.07G030700 Glycine max HOM05D004379 ORTHO05D005186 5.2e-14 81.3 95 47.4
ClCG09G002880 Citrullus lanatus HOM05D004379 ORTHO05D005186 6.9e-14 80.9 65 52.3
Ciclev10027032m.g Citrus clementina HOM05D004379 ORTHO05D005186 6.9e-14 80.9 113 41.6
ECA232G5025 Erigeron canadensis HOM05D000315 ORTHO05D001379 6.9e-14 80.9 91 48.4
Medtr4g114660 Medicago truncatula HOM05D004379 ORTHO05D005186 6.9e-14 80.9 64 60.9
PSO724G0030 Papaver somniferum HOM05D004379 ORTHO05D005186 6.9e-14 80.9 113 43.4
PGSC0003DMG400030926 Solanum tuberosum HOM05D004379 ORTHO05D005186 6.9e-14 80.9 110 40.9
QL05p029537 Quercus lobata HOM05D004379 ORTHO05D005186 9.0e-14 80.5 92 44.6
Cc04_g04300 Coffea canephora HOM05D004379 ORTHO05D005186 1.2e-13 80.1 61 54.1
Eucgr.C01743 Eucalyptus grandis HOM05D004379 ORTHO05D005186 1.2e-13 80.1 66 60.6
FvH4_6g29870 Fragaria vesca HOM05D004379 ORTHO05D005186 1.2e-13 80.1 65 58.5
FAN14G0452 Fragaria x ananassa HOM05D004379 ORTHO05D005186 1.2e-13 80.1 65 58.5
MBI04_g47848_MAGBIO Magnolia biondii HOM05D004379 ORTHO05D005186 1.2e-13 80.1 61 54.1
VMungo1215G1478 Vigna mungo HOM05D004379 ORTHO05D005186 1.2e-13 80.1 73 56.2
arahy.Tifrunner.gnm1.ann1.4DH38B Arachis hypogaea HOM05D004379 ORTHO05D005186 1.5e-13 79.7 62 56.5
arahy.Tifrunner.gnm1.ann1.4K2N5B Arachis hypogaea HOM05D004379 ORTHO05D005186 1.5e-13 79.7 62 56.5
MSTRG.11136 Avicennia marina HOM05D004379 ORTHO05D005186 1.5e-13 79.7 65 58.5
Medtr4g010300 Medicago truncatula HOM05D004379 ORTHO05D005186 1.5e-13 79.7 106 38.7
Phvul.010G155400 Phaseolus vulgaris HOM05D004379 ORTHO05D005186 1.5e-13 79.7 109 43.1
VMungo0331G0688 Vigna mungo HOM05D004379 ORTHO05D005186 1.5e-13 79.7 64 56.2
Glyma.17G113800 Glycine max HOM05D004379 ORTHO05D005186 2.0e-13 79.3 94 46.8
Gohir.D05G016800 Gossypium hirsutum HOM05D004379 ORTHO05D005186 2.0e-13 79.3 116 40.5
Gorai.009G017000 Gossypium raimondii HOM05D004379 ORTHO05D005186 2.0e-13 79.3 116 40.5
RcHm_v2.0_Chr2g0135761 Rosa chinensis HOM05D004379 ORTHO05D005186 2.0e-13 79.3 64 59.4
Sabra06G0050900 Salix brachista HOM05D004379 ORTHO05D005186 2.0e-13 79.3 110 38.2
arahy.Tifrunner.gnm1.ann1.WW0PRH Arachis hypogaea HOM05D004379 ORTHO05D005186 2.6e-13 79.0 62 58.1
Cpa.g.sc10.259 Carica papaya HOM05D004379 ORTHO05D005186 2.6e-13 79.0 106 41.5
Lalb_Chr07g0179021 Lupinus albus HOM05D004379 ORTHO05D005186 2.6e-13 79.0 64 57.8
Lalb_Chr22g0350861 Lupinus albus HOM05D004379 ORTHO05D005186 2.6e-13 79.0 62 54.8
AUR62016345 Chenopodium quinoa HOM05D004379 ORTHO05D005186 3.4e-13 78.6 69 56.5
COL.COLO4_18855 Corchorus olitorius HOM05D004379 ORTHO05D005186 3.4e-13 78.6 110 41.8
Lsat_1_v5_gn_5_132021 Lactuca sativa HOM05D004379 ORTHO05D005186 3.4e-13 78.6 110 38.2
TPR.G26481 Trifolium pratense HOM05D004379 ORTHO05D005186 3.4e-13 78.6 96 44.8
Aqoxy7G03687 Aquilegia oxysepala HOM05D004379 ORTHO05D005186 4.4e-13 78.2 61 54.1
HanXRQChr06g0169201 Helianthus annuus HOM05D004379 ORTHO05D005186 5.8e-13 77.8 102 45.1
MD02G1030200 Malus domestica HOM05D004379 ORTHO05D005186 5.8e-13 77.8 62 58.1
Manes.11G055900 Manihot esculenta HOM05D004379 ORTHO05D005186 5.8e-13 77.8 107 41.1
MELO3C017882.2 Cucumis melo HOM05D004379 ORTHO05D005186 7.6e-13 77.4 107 41.1
FAN09G2661 Fragaria x ananassa HOM05D004379 ORTHO05D005186 7.6e-13 77.4 63 58.7
Gohir.A05G015700 Gossypium hirsutum HOM05D004379 ORTHO05D005186 7.6e-13 77.4 115 39.1
Lalb_Chr13g0301791 Lupinus albus HOM05D004379 ORTHO05D005186 7.6e-13 77.4 94 45.7
CSS0024700 Camellia sinensis var. sinensis HOM05D004379 ORTHO05D005186 9.9e-13 77.0 67 55.2
COL.COLO4_12954 Corchorus olitorius HOM05D004379 ORTHO05D005186 9.9e-13 77.0 66 54.5
Duzib168G0259 Durio zibethinus HOM05D004379 ORTHO05D005186 9.9e-13 77.0 110 41.8
Duzib187G0465 Durio zibethinus HOM05D004379 ORTHO05D005186 9.9e-13 77.0 97 42.3
FAN05G0070 Fragaria x ananassa HOM05D004379 ORTHO05D005186 9.9e-13 77.0 64 57.8
ClCG07G012630 Citrullus lanatus HOM05D004379 ORTHO05D005186 1.3e-12 76.6 64 54.7
Ciclev10010462m.g Citrus clementina HOM05D004379 ORTHO05D005186 1.3e-12 76.6 80 47.5
FvH4_1g03100 Fragaria vesca HOM05D004379 ORTHO05D005186 1.3e-12 76.6 71 47.9
FAN23G1202 Fragaria x ananassa HOM05D004379 ORTHO05D005186 1.3e-12 76.6 71 47.9
FAN23G2903 Fragaria x ananassa HOM05D004379 ORTHO05D005186 1.3e-12 76.6 71 47.9
FAN26G3437 Fragaria x ananassa HOM05D004379 ORTHO05D005186 1.3e-12 76.6 71 47.9
Psat5g302160 Pisum sativum HOM05D004379 ORTHO05D005186 1.3e-12 76.6 93 40.9
Migut.D01070 Erythranthe guttata HOM05D004379 ORTHO05D005186 1.7e-12 76.3 77 46.8
FAN02G0226 Fragaria x ananassa HOM05D004379 ORTHO05D005186 1.7e-12 76.3 64 57.8
FAN17G1709 Fragaria x ananassa HOM05D004379 ORTHO05D005186 1.7e-12 76.3 64 57.8
Hma1.2p1_0042F.1_g025560 Hydrangea macrophylla HOM05D004379 ORTHO05D005186 1.7e-12 76.3 61 50.8
Phvul.005G177700 Phaseolus vulgaris HOM05D004379 ORTHO05D005186 1.7e-12 76.3 106 38.7
SalBow2G2996 Salvia bowleyana HOM05D004379 ORTHO05D005186 1.7e-12 76.3 62 54.8
Ciclev10010639m.g Citrus clementina HOM05D004379 ORTHO05D005186 2.2e-12 75.9 79 51.9
FAN28G1543 Fragaria x ananassa HOM05D004379 ORTHO05D005186 2.2e-12 75.9 71 46.5
MBI01_g38638_MAGBIO Magnolia biondii HOM05D004379 ORTHO05D005186 2.2e-12 75.9 61 54.1
Thecc.09G128000 Theobroma cacao HOM05D004379 ORTHO05D005186 2.2e-12 75.9 114 40.4
Hund06564 Selenicereus undatus HOM05D004379 ORTHO05D005186 2.9e-12 75.5 72 48.6
MD15G1171700 Malus domestica HOM05D004379 ORTHO05D005186 3.8e-12 75.1 62 53.2
Medtr2g103780 Medicago truncatula HOM05D004379 ORTHO05D005186 3.8e-12 75.1 69 47.8
unitig_61.g26235 Utricularia gibba HOM05D004379 ORTHO05D005186 3.8e-12 75.1 94 45.7
Psat7g256400 Pisum sativum HOM05D004379 ORTHO05D005186 4.9e-12 74.7 109 36.7
arahy.Tifrunner.gnm1.ann1.131LTR Arachis hypogaea HOM05D004379 ORTHO05D005186 6.4e-12 74.3 71 53.5
Cfa003389 Carpinus fangiana HOM05D004379 ORTHO05D005186 6.4e-12 74.3 100 40.0
Haze_25560 Corylus avellana HOM05D004379 ORTHO05D005186 6.4e-12 74.3 82 47.6
Eucgr.L02713 Eucalyptus grandis HOM05D004379 ORTHO05D005186 6.4e-12 74.3 110 34.5
DCAR_025508 Daucus carota HOM05D004379 ORTHO05D005186 1.1e-11 73.6 72 50.0
SalBow6G6427 Salvia bowleyana HOM05D004379 ORTHO05D005186 1.9e-11 72.8 61 50.8
HanXRQChr12g0361431 Helianthus annuus HOM05D004379 ORTHO05D005186 2.4e-11 72.4 66 51.5
Manes.14G121900 Manihot esculenta HOM05D004379 ORTHO05D005186 2.4e-11 72.4 112 39.3
Sed0015199 Sechium edule HOM05D004379 ORTHO05D005186 2.4e-11 72.4 67 46.3
Sed0020577 Sechium edule HOM05D004379 ORTHO05D005186 2.4e-11 72.4 64 53.1
unitig_0.g1118 Utricularia gibba HOM05D004379 ORTHO05D005186 2.4e-11 72.4 65 52.3
CiPaw.02G156500 Carya illinoinensis HOM05D004379 ORTHO05D005186 3.2e-11 72.0 96 41.7
CiPaw.03G245200 Carya illinoinensis HOM05D004379 ORTHO05D005186 3.2e-11 72.0 61 47.5
RcHm_v2.0_Chr2g0088241 Rosa chinensis HOM05D004379 ORTHO05D005186 3.2e-11 72.0 65 49.2
Eucgr.F03867 Eucalyptus grandis HOM05D004379 ORTHO05D005186 5.4e-11 71.2 76 42.1
Atru.chr1.2986 Acer truncatum HOM05D004379 ORTHO05D005186 7.1e-11 70.9 71 50.7
CiPaw.04G172300 Carya illinoinensis HOM05D004379 ORTHO05D005186 7.1e-11 70.9 61 54.1
Glyma.15G008000 Glycine max HOM05D004379 ORTHO05D005186 7.1e-11 70.9 64 46.9
Rhsim12G0191800 Rhododendron simsii HOM05D004379 ORTHO05D005186 7.1e-11 70.9 73 52.1
arahy.Tifrunner.gnm1.ann1.YHK00Y Arachis hypogaea HOM05D004379 ORTHO05D005186 1.2e-10 70.1 73 49.3
Peaxi162Scf00046g00719 Petunia axillaris HOM05D004379 ORTHO05D005186 1.2e-10 70.1 118 38.1
Phvul.003G165600 Phaseolus vulgaris HOM05D004379 ORTHO05D005186 1.6e-10 69.7 86 46.5
Prupe.7G244400 Prunus persica HOM05D004379 ORTHO05D005186 1.6e-10 69.7 63 50.8
DCAR_014889 Daucus carota HOM05D004379 ORTHO05D005186 2.1e-10 69.3 92 40.2
Lalb_Chr12g0197991 Lupinus albus HOM05D004379 ORTHO05D005186 2.1e-10 69.3 62 53.2
Sed0018633 Sechium edule HOM05D004379 ORTHO05D005186 2.7e-10 68.9 62 51.6
Sed0016032 Sechium edule HOM05D004379 ORTHO05D005186 4.6e-10 68.2 95 37.9
TPR.G37291 Trifolium pratense HOM05D004379 ORTHO05D005186 4.6e-10 68.2 71 43.7
Migut.I00774 Erythranthe guttata HOM05D004379 ORTHO05D005186 6.0e-10 67.8 70 48.6
Lalb_Chr04g0262391 Lupinus albus HOM05D004379 ORTHO05D005186 6.0e-10 67.8 66 45.5
QL02p088712 Quercus lobata HOM05D004379 ORTHO05D005186 6.0e-10 67.8 60 48.3
PSO135G0759 Papaver somniferum HOM05D004379 ORTHO05D005186 1.0e-09 67.0 77 41.6
PGR102G3274 Punica granatum HOM05D004379 ORTHO05D005186 1.3e-09 66.6 77 41.6
Nitab4.5_0007793g0030 Nicotiana tabacum HOM05D004379 ORTHO05D005186 6.6e-09 64.3 65 49.2
Sed0013123 Sechium edule HOM05D004379 ORTHO05D005186 6.6e-09 64.3 73 45.2
unitig_744.g24019 Utricularia gibba HOM05D004379 ORTHO05D005186 6.6e-09 64.3 94 35.1
SEGI_35416 Sequoiadendron giganteum HOM05D004379 ORTHO05D005186 3.3e-08 62.0 61 44.3
Prupe.7G036700 Prunus persica HOM05D004379 ORTHO05D005186 5.6e-08 61.2 63 44.4
ClCG06G011240 Citrullus lanatus HOM05D004379 ORTHO05D005186 7.3e-08 60.8 71 43.7
Solyc03g116650.3 Solanum lycopersicum HOM05D004379 ORTHO05D005186 7.3e-08 60.8 89 36.0
CsaV3_1G030270 Cucumis sativus L. HOM05D004379 ORTHO05D005186 2.8e-07 58.9 74 37.8
MSTRG.9427 Avicennia marina HOM05D004379 ORTHO05D005186 3.6e-07 58.5 56 51.8
CSS0018376 Camellia sinensis var. sinensis HOM05D004379 ORTHO05D005186 6.2e-07 57.8 66 43.9
Nitab4.5_0007034g0030 Nicotiana tabacum HOM05D001011 ORTHO05D000851 8.1e-07 57.4 51 49.0
SMO228G0182 Selaginella moellendorffii HOM05D001149 ORTHO05D000970 8.1e-07 57.4 92 37.0
SEGI_34139 Sequoiadendron giganteum HOM05D001149 ORTHO05D000970 8.1e-07 57.4 68 36.8
Aqoxy6G00752 Aquilegia oxysepala HOM05D001149 ORTHO05D000970 1.1e-06 57.0 78 35.9
Potri.019G128200 Populus trichocarpa HOM05D002122 ORTHO05D002205 1.4e-06 56.6 60 46.7
CDE12G0587 Ceratophyllum demersum HOM05D002122 ORTHO05D002205 1.8e-06 56.2 81 38.3
SMO343G0137 Selaginella moellendorffii HOM05D001149 ORTHO05D000970 1.8e-06 56.2 62 43.5
Glyma.14G202900 Glycine max HOM05D002122 ORTHO05D002205 2.4e-06 55.8 84 39.3
Manes.18G139700 Manihot esculenta HOM05D002122 ORTHO05D002205 2.4e-06 55.8 60 46.7
Carub.0004s1152 Capsella rubella HOM05D002122 ORTHO05D002205 3.1e-06 55.5 61 45.9
Duzib168G0418 Durio zibethinus HOM05D002122 ORTHO05D002205 3.1e-06 55.5 60 46.7
Thecc.09G362100 Theobroma cacao HOM05D002122 ORTHO05D002205 3.1e-06 55.5 60 46.7
TWI12G0794 Tripterygium wilfordii HOM05D004379 ORTHO05D005186 3.1e-06 55.5 120 31.7
BcaC01g05992 Brassica carinata HOM05D002122 ORTHO05D002205 4.0e-06 55.1 77 39.0
C03p20020 Brassica napus HOM05D002122 ORTHO05D002205 4.0e-06 55.1 77 39.0
BolC3t14379H Brassica oleracea HOM05D002122 ORTHO05D002205 4.0e-06 55.1 77 39.0
CANSAT54G0290 Cannabis sativa HOM05D002122 ORTHO05D002205 4.0e-06 55.1 61 45.9
Cfa011810 Carpinus fangiana HOM05D002122 ORTHO05D002205 4.0e-06 55.1 60 48.3
Haze_24451 Corylus avellana HOM05D002122 ORTHO05D002205 4.0e-06 55.1 60 48.3
AT2G30370 Arabidopsis thaliana HOM05D002122 ORTHO05D002205 5.3e-06 54.7 61 45.9
A04p23150 Brassica napus HOM05D002122 ORTHO05D002205 5.3e-06 54.7 61 45.9
Thhalv10017368m.g Eutrema salsugineum HOM05D002122 ORTHO05D002205 5.3e-06 54.7 61 45.9
Medtr4g037115 Medicago truncatula HOM05D002122 ORTHO05D002205 5.3e-06 54.7 59 45.8
Sp4g12930 Schrenkiella parvula HOM05D002122 ORTHO05D002205 5.3e-06 54.7 61 45.9
A03p16980 Brassica napus HOM05D002122 ORTHO05D002205 6.9e-06 54.3 61 44.3
Duzib212G0870 Durio zibethinus HOM05D002122 ORTHO05D002205 6.9e-06 54.3 60 48.3
Nitab4.5_0001060g0070 Nicotiana tabacum HOM05D002122 ORTHO05D002205 6.9e-06 54.3 61 44.3
Oeu011370.1 Olea europaea HOM05D002122 ORTHO05D002205 6.9e-06 54.3 77 39.0
Aqoxy4G02364 Aquilegia oxysepala HOM05D002122 ORTHO05D002205 9.0e-06 53.9 61 45.9
CARHR123720 Cardamine hirsuta HOM05D002122 ORTHO05D002205 9.0e-06 53.9 61 45.9
Cc01_g15190 Coffea canephora HOM05D002122 ORTHO05D002205 9.0e-06 53.9 60 45.0
SEGI_27344 Sequoiadendron giganteum HOM05D002122 ORTHO05D002205 9.0e-06 53.9 60 45.0
Sc06g0008090 Simmondsia chinensis HOM05D002122 ORTHO05D002205 9.0e-06 53.9 61 44.3
unitig_60.g25710 Utricularia gibba HOM05D002122 ORTHO05D002205 9.0e-06 53.9 60 46.7
GSVIVG01024582001 Vitis vinifera HOM05D002122 ORTHO05D002205 9.0e-06 53.9 60 45.0


User provided reference genes

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