Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g015660.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 1.5e-127 459.5 233 100.0
Sopen08g005770 Solanum pennellii HOM05D004281 ORTHO05D004839 1.6e-124 449.5 233 98.3
PGSC0003DMG400025217 Solanum tuberosum HOM05D004281 ORTHO05D004839 1.6e-124 449.5 233 98.3
CAN.G607.11 Capsicum annuum HOM05D004281 ORTHO05D004839 1.0e-96 357.1 235 82.1
Nitab4.5_0001110g0040 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.3e-88 329.3 237 75.1
Nitab4.5_0000668g0110 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.0e-87 326.2 235 75.3
PGSC0003DMG400029273 Solanum tuberosum HOM05D004281 ORTHO05D004839 1.7e-86 323.2 235 73.2
Solyc12g096590.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 1.1e-85 320.5 240 72.9
Sopen12g032420 Solanum pennellii HOM05D004281 ORTHO05D004839 3.2e-85 318.9 240 72.5
CAN.G566.44 Capsicum annuum HOM05D004281 ORTHO05D004839 6.0e-84 314.7 235 72.3
Peaxi162Scf00459g00125 Petunia axillaris HOM05D004281 ORTHO05D004839 2.3e-83 312.8 234 72.6
Nitab4.5_0001091g0070 Nicotiana tabacum HOM05D004281 ORTHO05D004839 6.0e-76 288.1 237 68.4
GSVIVG01038261001 Vitis vinifera HOM05D004281 ORTHO05D004839 2.4e-72 276.2 177 78.0
Migut.G00913 Erythranthe guttata HOM05D004281 ORTHO05D004839 3.1e-72 275.8 234 64.1
Ciclev10022149m.g Citrus clementina HOM05D004281 ORTHO05D004839 5.2e-72 275.0 205 68.8
Atru.chr8.1217 Acer truncatum HOM05D004281 ORTHO05D004839 6.9e-72 274.6 214 65.0
Atru.chr3.1980 Acer truncatum HOM05D004281 ORTHO05D004839 1.2e-71 273.9 206 68.0
SGA_v2.0_scaffold37G14906 Striga asiatica HOM05D004281 ORTHO05D004839 2.0e-71 273.1 232 64.2
MSTRG.24546 Avicennia marina HOM05D004281 ORTHO05D004839 3.4e-71 272.3 178 73.0
Dinv24743 Davidia involucrata HOM05D004281 ORTHO05D004839 3.4e-71 272.3 162 80.9
THA.LOC104802349 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 5.8e-71 271.6 186 72.0
TAR365G0664 Trochodendron aralioides HOM05D004281 ORTHO05D004839 7.6e-71 271.2 202 68.3
THA.LOC104804375 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 9.9e-71 270.8 185 72.4
Thecc.05G001000 Theobroma cacao HOM05D004281 ORTHO05D004839 9.9e-71 270.8 197 71.6
Nitab4.5_0010298g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.9e-70 269.2 239 65.3
COL.COLO4_27572 Corchorus olitorius HOM05D004281 ORTHO05D004839 3.8e-70 268.9 196 68.4
PGR142G2669 Punica granatum HOM05D004281 ORTHO05D004839 3.8e-70 268.9 209 68.4
Carub.0004s2660 Capsella rubella HOM05D004281 ORTHO05D004839 4.9e-70 268.5 194 69.1
CiPaw.01G202700 Carya illinoinensis HOM05D004281 ORTHO05D004839 4.9e-70 268.5 211 64.9
CSS0013668 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 6.4e-70 268.1 220 63.2
CSS0036502 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 6.4e-70 268.1 220 63.2
Thhalv10001807m.g Eutrema salsugineum HOM05D004281 ORTHO05D004839 6.4e-70 268.1 192 67.7
Potri.017G001800 Populus trichocarpa HOM05D004281 ORTHO05D004839 8.4e-70 267.7 204 65.7
Aa31LG1G25720 Aethionema arabicum HOM05D004281 ORTHO05D004839 1.4e-69 266.9 190 68.4
Actinidia18388 Actinidia chinensis HOM05D004281 ORTHO05D004839 1.9e-69 266.5 214 66.4
Gohir.A04G135700 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.9e-69 266.5 192 67.7
Gohir.D04G178800 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.9e-69 266.5 192 67.7
Gorai.012G171900 Gossypium raimondii HOM05D004281 ORTHO05D004839 1.9e-69 266.5 192 67.7
Sp4g26130 Schrenkiella parvula HOM05D004281 ORTHO05D004839 1.9e-69 266.5 192 67.7
Lalb_Chr13g0292401 Lupinus albus HOM05D004281 ORTHO05D004839 3.2e-69 265.8 235 61.3
Gohir.A11G012100 Gossypium hirsutum HOM05D004281 ORTHO05D004839 5.4e-69 265.0 192 67.7
Nn1g09410 Nelumbo nucifera HOM05D004281 ORTHO05D004839 5.4e-69 265.0 197 69.0
Glyma.08G087500 Glycine max HOM05D004281 ORTHO05D004839 7.1e-69 264.6 192 68.8
Gohir.D11G011300 Gossypium hirsutum HOM05D004281 ORTHO05D004839 7.1e-69 264.6 192 67.7
Gorai.007G012700 Gossypium raimondii HOM05D004281 ORTHO05D004839 7.1e-69 264.6 192 67.7
Aa31LG10G14140 Aethionema arabicum HOM05D004281 ORTHO05D004839 1.2e-68 263.8 165 76.4
Cc00_g16880 Coffea canephora HOM05D004281 ORTHO05D004839 1.2e-68 263.8 180 72.2
FAN15G1026 Fragaria x ananassa HOM05D004281 ORTHO05D004839 1.2e-68 263.8 191 68.6
AT2G44050 Arabidopsis thaliana HOM05D004281 ORTHO05D004839 1.6e-68 263.5 192 67.2
Manes.02G102600 Manihot esculenta HOM05D004281 ORTHO05D004839 1.6e-68 263.5 198 66.2
Prupe.7G270800 Prunus persica HOM05D004281 ORTHO05D004839 1.6e-68 263.5 191 68.1
A04p33170 Brassica napus HOM05D004281 ORTHO05D004839 2.1e-68 263.1 193 68.9
FvH4_2g10600 Fragaria vesca HOM05D004281 ORTHO05D004839 2.1e-68 263.1 201 65.7
FAN24G2282 Fragaria x ananassa HOM05D004281 ORTHO05D004839 2.1e-68 263.1 201 65.7
BcaB01g03334 Brassica carinata HOM05D004281 ORTHO05D004839 2.7e-68 262.7 202 64.9
CANSAT78G2301 Cannabis sativa HOM05D004281 ORTHO05D004839 2.7e-68 262.7 196 66.8
BcaC02g07139 Brassica carinata HOM05D004281 ORTHO05D004839 3.5e-68 262.3 198 66.7
CARHR139210 Cardamine hirsuta HOM05D004281 ORTHO05D004839 3.5e-68 262.3 192 68.8
TWI15G0067 Tripterygium wilfordii HOM05D004281 ORTHO05D004839 3.5e-68 262.3 185 70.3
BolC4t28587H Brassica oleracea HOM05D004281 ORTHO05D004839 4.6e-68 261.9 198 66.7
AL4G42920 Arabidopsis lyrata HOM05D004281 ORTHO05D004839 7.8e-68 261.2 192 66.1
ECA233G0955 Erigeron canadensis HOM05D004281 ORTHO05D004839 7.8e-68 261.2 180 69.4
Rhsim09G0002300 Rhododendron simsii HOM05D000705 ORTHO05D002970 7.8e-68 261.2 196 66.8
arahy.Tifrunner.gnm1.ann1.MYV34H Arachis hypogaea HOM05D004281 ORTHO05D004839 1.3e-67 260.4 165 75.2
Lalb_Chr12g0209091 Lupinus albus HOM05D004281 ORTHO05D004839 2.3e-67 259.6 169 74.6
QL10p065802 Quercus lobata HOM05D004281 ORTHO05D004839 2.3e-67 259.6 220 61.8
arahy.Tifrunner.gnm1.ann1.HHGT95 Arachis hypogaea HOM05D004281 ORTHO05D004839 3.0e-67 259.2 203 65.5
Eucgr.L01202 Eucalyptus grandis HOM05D004281 ORTHO05D004839 3.0e-67 259.2 186 68.8
FvH4_1g00110 Fragaria vesca HOM05D004281 ORTHO05D004839 3.0e-67 259.2 191 68.1
Lj4g0008259 Lotus japonicus HOM05D004281 ORTHO05D004839 3.0e-67 259.2 189 68.8
vmacro00726 Vaccinium macrocarpon HOM05D004281 ORTHO05D004839 3.9e-67 258.8 162 76.5
MD15G1142400 Malus domestica HOM05D004281 ORTHO05D004839 5.1e-67 258.5 203 65.0
Eucgr.F02801 Eucalyptus grandis HOM05D004281 ORTHO05D004839 8.7e-67 257.7 186 69.4
BcaB06g29353 Brassica carinata HOM05D004281 ORTHO05D004839 1.1e-66 257.3 186 69.4
BcaB06g29512 Brassica carinata HOM05D004281 ORTHO05D004839 1.1e-66 257.3 161 75.8
BolC3t15286H Brassica oleracea HOM05D004281 ORTHO05D004839 1.5e-66 256.9 186 68.3
BraA04t18776Z Brassica rapa HOM05D004281 ORTHO05D004839 1.5e-66 256.9 215 60.9
Cc05_g03580 Coffea canephora HOM05D004281 ORTHO05D004839 1.5e-66 256.9 177 72.3
Phvul.002G189800 Phaseolus vulgaris HOM05D004281 ORTHO05D004839 1.5e-66 256.9 220 61.4
Psat7g088840 Pisum sativum HOM05D004281 ORTHO05D004839 1.5e-66 256.9 221 59.7
Medtr4g094700 Medicago truncatula HOM05D004281 ORTHO05D004839 1.9e-66 256.5 190 66.3
PGR142G1214 Punica granatum HOM05D004281 ORTHO05D004839 1.9e-66 256.5 214 62.6
A03p24650 Brassica napus HOM05D004281 ORTHO05D004839 3.3e-66 255.8 186 68.8
BraA03t11671Z Brassica rapa HOM05D004281 ORTHO05D004839 3.3e-66 255.8 186 68.8
HanXRQChr13g0392191 Helianthus annuus HOM05D004281 ORTHO05D004839 5.6e-66 255.0 161 75.2
Psat5g058760 Pisum sativum HOM05D004281 ORTHO05D004839 5.6e-66 255.0 169 72.8
CDE09G0590 Ceratophyllum demersum HOM05D004281 ORTHO05D004839 7.3e-66 254.6 162 75.9
CsaV3_6G032410 Cucumis sativus L. HOM05D004281 ORTHO05D004839 9.6e-66 254.2 165 73.3
RcHm_v2.0_Chr2g0084411 Rosa chinensis HOM05D004281 ORTHO05D004839 9.6e-66 254.2 166 73.5
AUR62023693 Chenopodium quinoa HOM05D004281 ORTHO05D004839 1.3e-65 253.8 200 65.0
Potri.007G146000 Populus trichocarpa HOM05D004281 ORTHO05D004839 1.3e-65 253.8 204 64.2
EL10Ac3g06178 Beta vulgaris HOM05D004281 ORTHO05D004839 2.1e-65 253.1 232 59.1
Nitab4.5_0004802g0010 Nicotiana tabacum HOM05D004281 ORTHO05D004839 3.6e-65 252.3 212 67.0
Aqoxy7G00623 Aquilegia oxysepala HOM05D004281 ORTHO05D004839 1.4e-64 250.4 165 74.5
Sed0022244 Sechium edule HOM05D004281 ORTHO05D004839 2.4e-64 249.6 209 60.8
EL10Ac4g08581 Beta vulgaris HOM05D004281 ORTHO05D004839 3.1e-64 249.2 229 58.1
HanXRQChr13g0392171 Helianthus annuus HOM05D004281 ORTHO05D004839 9.0e-64 247.7 161 72.0
unitig_578.g16718 Utricularia gibba HOM05D000499 ORTHO05D007471 3.4e-63 245.7 177 68.4
Sabra17G0005800 Salix brachista HOM05D004281 ORTHO05D004839 4.5e-63 245.4 210 60.5
Oeu014981.1 Olea europaea HOM05D004281 ORTHO05D004839 7.6e-63 244.6 146 80.8
AUR62002492 Chenopodium quinoa HOM05D004281 ORTHO05D004839 9.9e-63 244.2 241 56.8
Sed0015421 Sechium edule HOM05D004281 ORTHO05D004839 1.3e-62 243.8 193 63.7
C03p29390 Brassica napus HOM05D004281 ORTHO05D004839 1.7e-62 243.4 207 61.4
Lsat_1_v5_gn_8_33320 Lactuca sativa HOM05D004281 ORTHO05D004839 2.2e-62 243.0 162 68.5
PSO732G0016 Papaver somniferum HOM05D004281 ORTHO05D004839 4.9e-62 241.9 193 62.2
PSO675G2617 Papaver somniferum HOM05D004281 ORTHO05D004839 8.4e-62 241.1 193 60.6
C04p70870 Brassica napus HOM05D001249 ORTHO05D003440 1.9e-61 240.0 189 64.0
Cpa.g.sc9.245 Carica papaya HOM05D004281 ORTHO05D004839 1.9e-61 240.0 219 58.9
VMungo0251G0005 Vigna mungo HOM05D004281 ORTHO05D004839 3.2e-61 239.2 186 65.6
DCAR_027490 Daucus carota HOM05D004281 ORTHO05D004839 5.4e-61 238.4 184 64.7
MELO3C011439.2 Cucumis melo HOM05D004281 ORTHO05D004839 1.6e-60 236.9 165 68.5
Haze_11113 Corylus avellana HOM05D004281 ORTHO05D004839 3.5e-60 235.7 141 79.4
FAN26G2986 Fragaria x ananassa HOM05D000705 ORTHO05D004839 7.9e-60 234.6 186 65.1
BcaC01g05189 Brassica carinata HOM05D001249 ORTHO05D003440 2.3e-59 233.0 175 66.3
Lsat_1_v5_gn_8_33340 Lactuca sativa HOM05D004281 ORTHO05D004839 5.1e-59 231.9 174 66.1
HPP92_005601 Vanilla planifolia HOM05D004281 ORTHO05D004839 5.1e-59 231.9 229 55.0
Nitab4.5_0000013g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 8.7e-59 231.1 190 71.6
TPR.G31246 Trifolium pratense HOM05D004281 ORTHO05D004839 8.7e-59 231.1 138 79.7
Ca_18245_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 1.1e-58 230.7 178 64.6
Ah.13g073140 Amaranthus hybridus HOM05D000705 ORTHO05D004839 1.5e-58 230.3 165 68.5
Pp3c27_2710 Physcomitrium patens HOM05D004281 ORTHO05D004839 1.3e-57 227.3 158 67.1
Zm00001eb068110 Zea mays HOM05D004281 ORTHO05D004839 2.8e-57 226.1 164 65.9
ClCG08G010210 Citrullus lanatus HOM05D004281 ORTHO05D004839 6.2e-57 224.9 138 75.4
SMO198G0030 Selaginella moellendorffii HOM05D004281 ORTHO05D004839 6.2e-57 224.9 155 65.2
FAN28G0724 Fragaria x ananassa HOM05D006787 ORTHO05D008366 8.1e-57 224.6 216 56.5
Pp3c16_5700 Physcomitrium patens HOM05D004281 ORTHO05D004839 1.4e-56 223.8 158 67.1
Os04g0497400 Oryza sativa ssp. japonica HOM05D004281 ORTHO05D004839 1.8e-56 223.4 154 70.8
Zm00001eb432360 Zea mays HOM05D004281 ORTHO05D004839 3.1e-56 222.6 193 59.6
Mapoly0120s0006 Marchantia polymorpha HOM05D004281 ORTHO05D004839 6.9e-56 221.5 160 66.9
QL10p064677 Quercus lobata HOM05D004281 ORTHO05D004839 2.9e-54 216.1 139 74.1
Cfa008529 Carpinus fangiana HOM05D006787 ORTHO05D008366 1.9e-53 213.4 144 72.9
Lj4A426G8 Lonicera japonica HOM05D004281 ORTHO05D004839 3.5e-52 209.1 127 75.6
RcHm_v2.0_Chr7g0227511 Rosa chinensis HOM05D004281 ORTHO05D004839 8.7e-51 204.5 132 72.7
ATR0743G183 Amborella trichopoda HOM05D004281 ORTHO05D004839 9.6e-50 201.1 127 72.4
Cre02.g088850 Chlamydomonas reinhardtii HOM05D004281 ORTHO05D004839 4.5e-47 192.2 145 62.1
Sc13g0007610 Simmondsia chinensis HOM05D004281 ORTHO05D004839 1.7e-46 190.3 177 59.3
CBR_g29269 Chara braunii HOM05D004281 ORTHO05D004839 3.8e-46 189.1 144 61.1
Duzib212G0492 Durio zibethinus HOM05D004281 ORTHO05D004839 4.9e-46 188.7 153 64.7
QL08p018116 Quercus lobata HOM05D004281 ORTHO05D004839 1.9e-45 186.8 148 65.5
BcaB01g03343 Brassica carinata HOM05D001249 ORTHO05D003440 4.2e-45 185.7 175 58.3
TPR.G18090 Trifolium pratense HOM05D004281 ORTHO05D004839 1.6e-44 183.7 138 65.9
unitig_85.g27225 Utricularia gibba HOM05D004281 ORTHO05D004839 9.7e-42 174.5 106 79.2
MBI07_g44299_MAGBIO Magnolia biondii HOM05D004281 ORTHO05D004839 1.8e-40 170.2 115 73.0
Hund22685 Selenicereus undatus HOM05D001165 ORTHO05D004839 5.5e-37 158.7 116 62.9
RcHm_v2.0_Chr7g0214271 Rosa chinensis HOM05D004281 ORTHO05D004839 4.6e-36 155.6 97 74.2
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 3.9e-35 152.5 150 49.3
Duzib093G0607 Durio zibethinus HOM05D004281 ORTHO05D004839 7.4e-34 148.3 121 62.8
CSS0034557 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 9.1e-32 141.4 186 46.8
Ca_28575_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 2.6e-31 139.8 132 50.8
Cc00_g12430 Coffea canephora HOM05D004281 ORTHO05D004839 1.0e-30 137.9 77 85.7
Cc00_g23590 Coffea canephora HOM05D004281 ORTHO05D004839 2.2e-30 136.7 110 64.5
CSS0012879 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 2.9e-30 136.3 221 42.5
Cc00_g08810 Coffea canephora HOM05D004281 ORTHO05D004839 1.1e-29 134.4 77 83.1
Lj5A837G66 Lonicera japonica HOM05D004281 ORTHO05D004839 4.2e-29 132.5 74 81.1
CSS0024434 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 7.2e-29 131.7 186 45.2
C08p46660 Brassica napus HOM05D004281 ORTHO05D004839 4.5e-23 112.5 100 60.0
TAR362G0423 Trochodendron aralioides HOM05D004281 ORTHO05D004839 5.0e-22 109.0 73 75.3
Cc00_g34060 Coffea canephora HOM05D004281 ORTHO05D004839 8.5e-22 108.2 80 65.0
C05p19750 Brassica napus HOM05D004281 ORTHO05D004839 1.9e-21 107.1 98 58.2
BolC8t52208H Brassica oleracea HOM05D004281 ORTHO05D004839 1.2e-20 104.4 123 47.2
BcaC05g25876 Brassica carinata HOM05D004281 ORTHO05D004839 4.8e-17 92.4 70 64.3
QL08p018107 Quercus lobata HOM05D004281 ORTHO05D004839 1.7e-14 84.0 46 80.4
Cc00_g15820 Coffea canephora HOM05D004281 ORTHO05D004839 6.5e-14 82.0 103 44.7
Cc00_g15810 Coffea canephora HOM05D004281 ORTHO05D004839 2.1e-12 77.0 52 69.2
Cc00_g25460 Coffea canephora HOM05D004281 ORTHO05D004839 3.6e-12 76.3 42 83.3
Cc05_g00900 Coffea canephora HOM05D004281 ORTHO05D004839 4.7e-12 75.9 42 81.0
Lsat_1_v5_gn_8_13760 Lactuca sativa HOM05D004281 ORTHO05D004839 9.7e-10 68.2 125 36.0
Cc05_g01000 Coffea canephora HOM05D004281 ORTHO05D004839 1.2e-07 61.2 32 87.5
Hma1.2p1_0872F.1_g231180 Hydrangea macrophylla HOM05D004281 ORTHO05D004839 1.6e-07 60.8 83 47.0
Actinidia34560 Actinidia chinensis HOM05D028692 ORTHO05D015213 3.5e-07 59.7 37 67.6
AagrBONN_evm.TU.Sc2ySwM_344.4461 Anthoceros agrestis HOM05D004281 ORTHO05D004839 5.0e-06 55.8 46 58.7


User provided reference genes

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