Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g014300.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 9.9e-83 310.1 157 100.0
Sopen08g005210 Solanum pennellii HOM05D003922 ORTHO05D004492 1.9e-78 295.8 150 100.0
PGSC0003DMG400016054 Solanum tuberosum HOM05D003922 ORTHO05D004492 5.3e-76 287.7 150 96.0
Peaxi162Scf00075g01329 Petunia axillaris HOM05D003922 ORTHO05D004492 1.1e-65 253.4 150 85.3
CAN.G759.3 Capsicum annuum HOM05D003922 ORTHO05D004492 3.2e-65 251.9 150 81.3
Actinidia27120 Actinidia chinensis HOM05D003922 ORTHO05D004492 5.1e-63 244.6 150 80.7
Dinv18325 Davidia involucrata HOM05D003922 ORTHO05D004492 9.7e-62 240.4 150 77.3
Oeu050329.1 Olea europaea HOM05D003922 ORTHO05D004492 2.8e-61 238.8 150 77.3
Cc03_g14390 Coffea canephora HOM05D003922 ORTHO05D004492 1.8e-60 236.1 150 74.7
Rhsim09G0008700 Rhododendron simsii HOM05D003922 ORTHO05D004492 5.3e-60 234.6 150 75.3
CSS0038398 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 9.0e-60 233.8 150 74.0
CSS0049854 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 2.0e-59 232.6 150 75.3
CSS0002835 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 4.5e-59 231.5 150 73.3
vmacro00688 Vaccinium macrocarpon HOM05D003922 ORTHO05D004492 5.9e-59 231.1 150 75.3
GSVIVG01035132001 Vitis vinifera HOM05D003922 ORTHO05D004492 5.9e-59 231.1 150 73.3
PGSC0003DMG400016330 Solanum tuberosum HOM05D003922 ORTHO05D004492 8.5e-58 227.3 150 72.7
Sopen06g018570 Solanum pennellii HOM05D003922 ORTHO05D004492 1.9e-57 226.1 150 72.0
DCAR_005455 Daucus carota HOM05D003922 ORTHO05D004492 2.1e-56 222.6 150 72.7
Lj6A217G7 Lonicera japonica HOM05D003922 ORTHO05D004492 6.1e-56 221.1 150 70.0
BcaC07g42112 Brassica carinata HOM05D003922 ORTHO05D004492 1.0e-55 220.3 150 70.0
Thhalv10009017m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 1.0e-55 220.3 150 70.0
PGR142G3702 Punica granatum HOM05D003922 ORTHO05D004492 1.0e-55 220.3 150 70.0
Manes.05G137000 Manihot esculenta HOM05D003922 ORTHO05D004492 1.8e-55 219.5 150 71.3
TAR633G0046 Trochodendron aralioides HOM05D003922 ORTHO05D004492 1.8e-55 219.5 147 70.7
HanXRQChr11g0343091 Helianthus annuus HOM05D003922 ORTHO05D004492 3.9e-55 218.4 147 70.7
Migut.N03060 Erythranthe guttata HOM05D003922 ORTHO05D004492 5.1e-55 218.0 150 68.0
Lsat_1_v5_gn_1_74581 Lactuca sativa HOM05D003922 ORTHO05D004492 5.1e-55 218.0 147 69.4
MSTRG.22037 Avicennia marina HOM05D003922 ORTHO05D004492 6.7e-55 217.6 153 68.6
A09p67310 Brassica napus HOM05D003922 ORTHO05D004492 6.7e-55 217.6 150 68.0
Gohir.A09G213608 Gossypium hirsutum HOM05D003922 ORTHO05D004492 6.7e-55 217.6 147 68.7
Gohir.D09G212300 Gossypium hirsutum HOM05D003922 ORTHO05D004492 6.7e-55 217.6 147 68.7
Gorai.006G232100 Gossypium raimondii HOM05D003922 ORTHO05D004492 6.7e-55 217.6 147 68.7
AL1G15640 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 2.5e-54 215.7 150 70.0
AT1G05730 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 2.5e-54 215.7 150 69.3
MSTRG.24564 Avicennia marina HOM05D003922 ORTHO05D004492 2.5e-54 215.7 150 67.3
Eucgr.H00289 Eucalyptus grandis HOM05D003922 ORTHO05D004492 3.3e-54 215.3 150 68.0
Potri.013G127400 Populus trichocarpa HOM05D003922 ORTHO05D004492 3.3e-54 215.3 148 70.3
Sc19g0002260 Simmondsia chinensis HOM05D003922 ORTHO05D004492 3.3e-54 215.3 150 68.0
Duzib268G1060 Durio zibethinus HOM05D003922 ORTHO05D004492 5.7e-54 214.5 150 66.7
Aa31LG5G5270 Aethionema arabicum HOM05D003922 ORTHO05D004492 7.4e-54 214.2 150 66.7
unitig_578.g16270 Utricularia gibba HOM05D003922 ORTHO05D004492 7.4e-54 214.2 142 68.3
AT2G31725 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 9.7e-54 213.8 150 66.0
CAN.G1401.2 Capsicum annuum HOM05D003922 ORTHO05D004492 9.7e-54 213.8 150 68.7
Nitab4.5_0004700g0050 Nicotiana tabacum HOM05D003922 ORTHO05D004492 9.7e-54 213.8 170 64.1
Sabra13G0106500 Salix brachista HOM05D003922 ORTHO05D004492 9.7e-54 213.8 148 70.9
Thecc.04G164400 Theobroma cacao HOM05D003922 ORTHO05D004492 9.7e-54 213.8 147 67.3
THA.LOC104800922 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 1.6e-53 213.0 150 68.0
ECA248G0756 Erigeron canadensis HOM05D003922 ORTHO05D004492 2.2e-53 212.6 148 69.6
TWI63G0384 Tripterygium wilfordii HOM05D003922 ORTHO05D004492 2.2e-53 212.6 150 68.0
AL4G26980 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 2.8e-53 212.2 150 65.3
Sp1g04550 Schrenkiella parvula HOM05D003922 ORTHO05D004492 2.8e-53 212.2 147 68.0
Cpa.g.sc9.377 Carica papaya HOM05D003922 ORTHO05D004492 3.7e-53 211.8 150 66.7
Nn2g13969 Nelumbo nucifera HOM05D003922 ORTHO05D004492 3.7e-53 211.8 147 68.0
Sp4g14200 Schrenkiella parvula HOM05D003922 ORTHO05D004492 4.8e-53 211.5 150 66.7
BraA09t42062Z Brassica rapa HOM05D003922 ORTHO05D004492 8.2e-53 210.7 157 65.0
Thhalv10017374m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 1.1e-52 210.3 150 66.0
Hund03208 Selenicereus undatus HOM05D003922 ORTHO05D004492 1.1e-52 210.3 146 67.1
SGA_v2.0_scaffold25G11004 Striga asiatica HOM05D003922 ORTHO05D004492 2.4e-52 209.1 150 65.3
C04p18050 Brassica napus HOM05D003922 ORTHO05D004492 4.1e-52 208.4 150 64.7
BolC4t23353H Brassica oleracea HOM05D003922 ORTHO05D004492 4.1e-52 208.4 150 64.7
Sed0023559 Sechium edule HOM05D003922 ORTHO05D004492 4.1e-52 208.4 148 66.2
Aqoxy2G04156 Aquilegia oxysepala HOM05D003922 ORTHO05D004492 5.3e-52 208.0 151 65.6
CANSAT56G1338 Cannabis sativa HOM05D003922 ORTHO05D004492 5.3e-52 208.0 144 69.4
THA.LOC104815872 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 5.3e-52 208.0 147 66.7
CARHR005250 Cardamine hirsuta HOM05D003922 ORTHO05D004492 6.9e-52 207.6 147 66.7
PSO573G0028 Papaver somniferum HOM05D003922 ORTHO05D004492 6.9e-52 207.6 145 66.9
Peaxi162Scf00579g00013 Petunia axillaris HOM05D003922 ORTHO05D004492 6.9e-52 207.6 148 71.6
EL10Ac3g06102 Beta vulgaris HOM05D003922 ORTHO05D004492 9.1e-52 207.2 149 63.8
Oeu015712.2 Olea europaea HOM05D003922 ORTHO05D004492 9.1e-52 207.2 222 50.9
Carub.0004s1303 Capsella rubella HOM05D003922 ORTHO05D004492 1.2e-51 206.8 148 65.5
BolC8t52690H Brassica oleracea HOM05D003922 ORTHO05D004492 1.5e-51 206.5 160 62.5
BcaC02g11282 Brassica carinata HOM05D003922 ORTHO05D004492 2.0e-51 206.1 150 64.0
CsaV3_5G030170 Cucumis sativus L. HOM05D003922 ORTHO05D004492 2.0e-51 206.1 150 66.7
Os11g0256200 Oryza sativa ssp. japonica HOM05D003922 ORTHO05D004492 2.6e-51 205.7 147 67.3
BcaB02g10413 Brassica carinata HOM05D003922 ORTHO05D004492 3.4e-51 205.3 150 63.3
Cfa015673 Carpinus fangiana HOM05D003922 ORTHO05D004492 3.4e-51 205.3 150 66.7
CARHR125410 Cardamine hirsuta HOM05D003922 ORTHO05D004492 4.5e-51 204.9 148 62.8
ClCG11G013550 Citrullus lanatus HOM05D003922 ORTHO05D004492 4.5e-51 204.9 150 66.0
PSO017G0931 Papaver somniferum HOM05D003922 ORTHO05D004492 5.9e-51 204.5 145 66.9
CiPaw.01G168800 Carya illinoinensis HOM05D003922 ORTHO05D004492 7.7e-51 204.1 150 66.0
MELO3C011855.2 Cucumis melo HOM05D003922 ORTHO05D004492 1.7e-50 203.0 147 66.0
SGA_v2.0_scaffold19G08849 Striga asiatica HOM05D003922 ORTHO05D004492 1.7e-50 203.0 161 60.9
C08p51620 Brassica napus HOM05D003922 ORTHO05D004492 2.2e-50 202.6 161 62.1
MD04G1037100 Malus domestica HOM05D003922 ORTHO05D004492 2.2e-50 202.6 150 64.0
Atru.chr4.1453 Acer truncatum HOM05D003922 ORTHO05D004492 2.9e-50 202.2 150 64.7
SalBow6G3114 Salvia bowleyana HOM05D003922 ORTHO05D004492 2.9e-50 202.2 148 65.5
CDE09G1276 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 3.8e-50 201.8 147 66.7
DCAR_027517 Daucus carota HOM05D003922 ORTHO05D004492 8.5e-50 200.7 148 65.5
Ciclev10022699m.g Citrus clementina HOM05D003922 ORTHO05D004492 3.2e-49 198.7 150 64.0
Glyma.06G319900 Glycine max HOM05D003922 ORTHO05D004492 1.2e-48 196.8 149 63.8
BraA05t20315Z Brassica rapa HOM05D003922 ORTHO05D004492 1.6e-48 196.4 162 58.6
AUR62002412 Chenopodium quinoa HOM05D003922 ORTHO05D004492 1.6e-48 196.4 147 63.3
Carub.0001s0508 Capsella rubella HOM05D003922 ORTHO05D004492 6.1e-48 194.5 150 63.3
QL10p056544 Quercus lobata HOM05D003922 ORTHO05D004492 6.1e-48 194.5 148 62.2
TPR.G16707 Trifolium pratense HOM05D003922 ORTHO05D004492 6.1e-48 194.5 149 64.4
Glyma.02G058200 Glycine max HOM05D003922 ORTHO05D004492 7.9e-48 194.1 149 63.1
Ca_14117_v3 Cicer arietinum L. HOM05D003922 ORTHO05D004492 3.0e-47 192.2 149 63.8
Lj3g0023756 Lotus japonicus HOM05D003922 ORTHO05D004492 3.0e-47 192.2 149 64.4
Phvul.005G007000 Phaseolus vulgaris HOM05D003922 ORTHO05D004492 3.0e-47 192.2 149 63.1
RcHm_v2.0_Chr4g0405841 Rosa chinensis HOM05D003922 ORTHO05D004492 3.0e-47 192.2 150 61.3
ATR0743G180 Amborella trichopoda HOM05D003922 ORTHO05D004492 1.1e-46 190.3 140 62.1
Glyma.04G117900 Glycine max HOM05D003922 ORTHO05D004492 1.1e-46 190.3 149 63.1
Lalb_Chr18g0048821 Lupinus albus HOM05D003922 ORTHO05D004492 1.1e-46 190.3 149 61.7
Medtr3g009130 Medicago truncatula HOM05D003922 ORTHO05D004492 3.3e-46 188.7 149 63.1
Prupe.1G185700 Prunus persica HOM05D003922 ORTHO05D004492 4.4e-46 188.3 147 62.6
Duzib151G1155 Durio zibethinus HOM05D003922 ORTHO05D004492 7.4e-46 187.6 181 52.5
Psat5g230680 Pisum sativum HOM05D003922 ORTHO05D004492 7.4e-46 187.6 149 62.4
COL.COLO4_38113 Corchorus olitorius HOM05D003922 ORTHO05D004492 9.7e-46 187.2 135 65.9
Zm00001eb169120 Zea mays HOM05D003922 ORTHO05D004492 9.7e-46 187.2 139 62.6
FvH4_3g34590 Fragaria vesca HOM05D003922 ORTHO05D004492 1.3e-45 186.8 143 62.2
FAN11G1624 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.3e-45 186.8 143 62.2
FAN25G1394 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.3e-45 186.8 143 62.2
FAN02G1921 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.7e-45 186.4 145 61.4
FAN06G3125 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.7e-45 186.4 145 61.4
FAN21G3935 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.8e-45 185.7 143 61.5
FAN16G1833 Fragaria x ananassa HOM05D003922 ORTHO05D004492 3.7e-45 185.3 143 61.5
arahy.Tifrunner.gnm1.ann1.D9AT9V Arachis hypogaea HOM05D003922 ORTHO05D004492 6.3e-45 184.5 149 60.4
VMungo1080G1004 Vigna mungo HOM05D003922 ORTHO05D004492 6.3e-45 184.5 149 59.7
AT2G43720 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 1.1e-44 183.7 144 57.6
Zm00001eb169100 Zea mays HOM05D003922 ORTHO05D004492 1.8e-44 183.0 139 63.3
Lj6A207G21 Lonicera japonica HOM05D003922 ORTHO05D004492 4.1e-44 181.8 193 51.3
CARHR138910 Cardamine hirsuta HOM05D003922 ORTHO05D004492 6.9e-44 181.0 144 56.2
THA.LOC104804105 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 1.2e-43 180.3 153 57.5
HPP92_023724 Vanilla planifolia HOM05D003922 ORTHO05D004492 1.5e-43 179.9 148 59.5
BcaC02g07156 Brassica carinata HOM05D000941 ORTHO05D004492 2.6e-43 179.1 152 53.3
Sp4g25790 Schrenkiella parvula HOM05D003922 ORTHO05D004492 3.4e-43 178.7 144 57.6
BolC4t28571H Brassica oleracea HOM05D003922 ORTHO05D004492 4.5e-43 178.3 150 54.0
AL4G42550 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 1.3e-42 176.8 144 54.2
Thhalv10001669m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 6.5e-42 174.5 143 56.6
CiPaw.02G099200 Carya illinoinensis HOM05D003922 ORTHO05D004492 1.9e-41 172.9 143 59.4
C04p70710 Brassica napus HOM05D003922 ORTHO05D004492 2.5e-41 172.6 151 53.0
Carub.0004s2626 Capsella rubella HOM05D003922 ORTHO05D004492 2.5e-41 172.6 144 54.9
A04p33020 Brassica napus HOM05D003922 ORTHO05D004492 3.2e-41 172.2 143 53.8
BraA04t18761Z Brassica rapa HOM05D003922 ORTHO05D004492 3.2e-41 172.2 143 53.8
BcaB06g29344 Brassica carinata HOM05D003922 ORTHO05D004492 7.2e-41 171.0 143 54.5
MBI07_g11491_MAGBIO Magnolia biondii HOM05D003922 ORTHO05D004492 5.2e-39 164.9 140 60.0
BcaC07g42117 Brassica carinata HOM05D003922 ORTHO05D004492 7.4e-38 161.0 151 57.6
Nitab4.5_0000013g0490 Nicotiana tabacum HOM05D003922 ORTHO05D004492 6.3e-37 157.9 89 83.1
BcaC07g42114 Brassica carinata HOM05D003922 ORTHO05D004492 3.1e-36 155.6 108 67.6
Lj3P164T1 Lonicera japonica HOM05D003922 ORTHO05D004492 3.1e-36 155.6 105 69.5
Lju359P1T4 Lonicera japonica HOM05D003922 ORTHO05D004492 3.1e-36 155.6 105 69.5
Nitab4.5_0007474g0040 Nicotiana tabacum HOM05D003922 ORTHO05D004492 5.9e-35 151.4 133 58.6
arahy.Tifrunner.gnm1.ann1.1Q5EFH Arachis hypogaea HOM05D003922 ORTHO05D004492 5.0e-34 148.3 149 51.7
Glyma.06G288100 Glycine max HOM05D003922 ORTHO05D004492 3.2e-33 145.6 134 56.7
Glyma.06G288300 Glycine max HOM05D003922 ORTHO05D004492 3.2e-33 145.6 134 56.7
A05p13780 Brassica napus HOM05D003922 ORTHO05D004492 4.2e-33 145.2 151 49.0
Solyc06g053490.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 4.2e-33 145.2 91 73.6
arahy.Tifrunner.gnm1.ann1.H4TYTD Arachis hypogaea HOM05D003922 ORTHO05D004492 6.7e-31 137.9 143 50.3
CDE04G0234 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 1.3e-29 133.7 89 67.4
Aa31LG1G25440 Aethionema arabicum HOM05D003922 ORTHO05D004492 1.7e-29 133.3 105 58.1
Glyma.06G320000 Glycine max HOM05D003922 ORTHO05D004492 3.7e-29 132.1 145 48.3
Haze_00850 Corylus avellana HOM05D003922 ORTHO05D004492 1.1e-28 130.6 99 62.6
Haze_00864 Corylus avellana HOM05D003922 ORTHO05D004492 1.0e-26 124.0 89 65.2
Glyma.06G288000 Glycine max HOM05D003922 ORTHO05D004492 1.3e-26 123.6 144 45.1
SEGI_40113 Sequoiadendron giganteum HOM05D003922 ORTHO05D004492 9.4e-25 117.5 86 59.3
arahy.Tifrunner.gnm1.ann1.GG9VXM Arachis hypogaea HOM05D003922 ORTHO05D004492 4.0e-23 112.1 149 45.0
Carub.0001s0509 Capsella rubella HOM05D003922 ORTHO05D004492 1.5e-22 110.2 85 58.8
AT1G05740 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 1.3e-21 107.1 103 51.5
AagrBONN_evm.TU.Sc2ySwM_228.3693 Anthoceros agrestis HOM05D003922 ORTHO05D004492 6.3e-21 104.8 138 35.5
Pp3c22_16840 Physcomitrium patens HOM05D003922 ORTHO05D004492 8.3e-21 104.4 139 38.1
Psat3g002600 Pisum sativum HOM05D003321 ORTHO05D004492 1.4e-20 103.6 80 56.2
SMO174G0123 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 8.6e-18 94.4 130 31.5
Glyma.06G288200 Glycine max HOM05D003922 ORTHO05D004492 2.5e-17 92.8 144 38.9
Lsat_1_v5_gn_3_36701 Lactuca sativa HOM05D003922 ORTHO05D004492 1.4e-15 87.0 101 46.5
SMO174G0129 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 2.3e-15 86.3 141 29.8
arahy.Tifrunner.gnm1.ann1.V6LTI0 Arachis hypogaea HOM05D003922 ORTHO05D004492 9.8e-14 80.9 72 54.2
BcaB05g24674 Brassica carinata HOM05D001689 ORTHO05D004492 2.8e-13 79.3 51 68.6
SMO116G0121 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 8.3e-13 77.8 103 35.0
CiPaw.16G066500 Carya illinoinensis HOM05D003922 ORTHO05D004492 5.9e-11 71.6 79 49.4
Mapoly0006s0297 Marchantia polymorpha HOM05D003922 ORTHO05D004492 1.0e-10 70.9 137 25.5
arahy.Tifrunner.gnm1.ann1.DMY77W Arachis hypogaea HOM05D003922 ORTHO05D004492 1.3e-10 70.5 86 39.5
BcaB05g25136 Brassica carinata HOM05D003922 ORTHO05D004492 2.3e-10 69.7 39 71.8
AL1G15650 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 3.3e-09 65.9 82 47.6
Cre12.g551900 Chlamydomonas reinhardtii HOM05D003922 ORTHO05D004492 1.6e-08 63.5 124 29.0
CBR_g3774 Chara braunii HOM05D003922 ORTHO05D004492 8.0e-08 61.2 136 25.0
AUR62023777 Chenopodium quinoa HOM05D003922 ORTHO05D004492 1.0e-07 60.8 46 56.5
BcaC02g08825 Brassica carinata HOM05D003922 ORTHO05D031941 2.6e-06 56.2 52 57.7
C04p50010 Brassica napus HOM05D003922 ORTHO05D031941 5.8e-06 55.1 54 57.4
BolC4t26594H Brassica oleracea HOM05D003922 ORTHO05D031941 5.8e-06 55.1 52 55.8


User provided reference genes

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