Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g014060.4 Solanum lycopersicum HOM05D005198 ORTHO05D006839 0.0e+00 1117.8 577 100.0
Sopen08g004940 Solanum pennellii HOM05D005198 ORTHO05D006839 1.7e-281 972.2 529 95.1
CAN.G1411.3 Capsicum annuum HOM05D005198 ORTHO05D006839 2.0e-261 905.6 528 86.9
Rhsim04G0106800 Rhododendron simsii HOM05D005198 ORTHO05D006839 1.3e-233 813.1 525 74.1
MD15G1424000 Malus domestica HOM05D005198 ORTHO05D006839 3.3e-232 808.5 521 74.5
Actinidia28982 Actinidia chinensis HOM05D005198 ORTHO05D006839 2.1e-231 805.8 524 74.4
Manes.04G036150 Manihot esculenta HOM05D005198 ORTHO05D006839 5.8e-229 797.7 525 74.3
PGR142G0872 Punica granatum HOM05D005198 ORTHO05D006839 7.5e-229 797.3 509 74.9
Cc03_g14040 Coffea canephora HOM05D005198 ORTHO05D006839 2.2e-228 795.8 518 76.3
Peaxi162Scf00075g01544 Petunia axillaris HOM05D005198 ORTHO05D006839 1.1e-227 793.5 488 84.6
Ciclev10019752m.g Citrus clementina HOM05D005198 ORTHO05D006839 1.9e-227 792.7 507 73.8
Nitab4.5_0011921g0010 Nicotiana tabacum HOM05D005198 ORTHO05D006839 5.4e-227 791.2 490 81.2
Potri.013G126300 Populus trichocarpa HOM05D005198 ORTHO05D006839 2.7e-226 788.9 504 73.2
Prupe.1G207000 Prunus persica HOM05D005198 ORTHO05D006839 2.7e-226 788.9 525 73.7
QL10p055731 Quercus lobata HOM05D005198 ORTHO05D006839 2.7e-226 788.9 494 74.1
Thecc.01G302200 Theobroma cacao HOM05D005198 ORTHO05D006839 1.0e-225 786.9 509 74.5
Sabra13G0105600 Salix brachista HOM05D005198 ORTHO05D006839 3.0e-225 785.4 527 72.3
RcHm_v2.0_Chr2g0123631 Rosa chinensis HOM05D005198 ORTHO05D006839 1.1e-224 783.5 527 73.4
TAR365G0102 Trochodendron aralioides HOM05D005198 ORTHO05D006839 5.6e-224 781.2 530 73.0
Eucgr.H00311 Eucalyptus grandis HOM05D005198 ORTHO05D006839 2.8e-223 778.9 518 71.0
Oeu020813.1 Olea europaea HOM05D005198 ORTHO05D006839 6.2e-223 777.7 493 75.1
TWI63G1273 Tripterygium wilfordii HOM05D005198 ORTHO05D006839 6.2e-223 777.7 523 72.3
Aqoxy2G02750 Aquilegia oxysepala HOM05D005198 ORTHO05D006839 2.2e-220 769.2 528 71.6
Hma1.2p1_0150F.1_g066860 Hydrangea macrophylla HOM05D005198 ORTHO05D006839 4.9e-220 768.1 499 72.7
Migut.G01222 Erythranthe guttata HOM05D005198 ORTHO05D006839 2.4e-219 765.8 489 74.2
GSVIVG01038139001 Vitis vinifera HOM05D005198 ORTHO05D006839 5.4e-219 764.6 494 73.3
Lj1g0021010 Lotus japonicus HOM05D005198 ORTHO05D006839 2.1e-218 762.7 498 72.7
Nitab4.5_0000122g0140 Nicotiana tabacum HOM05D005198 ORTHO05D006839 1.3e-217 760.0 436 86.9
CANSAT11G2028 Cannabis sativa HOM05D005198 ORTHO05D006839 3.9e-217 758.4 517 71.0
ClCG07G015220 Citrullus lanatus HOM05D005198 ORTHO05D006839 2.5e-216 755.7 522 70.3
VMungo0251G3269 Vigna mungo HOM05D005198 ORTHO05D006839 4.3e-216 755.0 526 72.1
MELO3C017760.2 Cucumis melo HOM05D005198 ORTHO05D006839 7.3e-216 754.2 525 69.1
Sed0009334 Sechium edule HOM05D005198 ORTHO05D006839 1.6e-215 753.1 508 70.5
FAN28G0627 Fragaria x ananassa HOM05D005198 ORTHO05D006839 2.1e-215 752.7 517 70.4
Glyma.07G208200 Glycine max HOM05D005198 ORTHO05D006839 6.2e-215 751.1 522 70.1
SalBow3G0226 Salvia bowleyana HOM05D005198 ORTHO05D006839 6.2e-215 751.1 508 71.7
Duzib151G0783 Durio zibethinus HOM05D005198 ORTHO05D006839 8.1e-215 750.7 526 70.5
arahy.Tifrunner.gnm1.ann1.A4X0ZB Arachis hypogaea HOM05D005198 ORTHO05D006839 1.4e-214 750.0 524 69.5
TPR.G23517 Trifolium pratense HOM05D005198 ORTHO05D006839 1.2e-213 746.9 490 72.7
arahy.Tifrunner.gnm1.ann1.Q28JUU Arachis hypogaea HOM05D005198 ORTHO05D006839 1.5e-213 746.5 513 69.6
PSO675G4502 Papaver somniferum HOM05D005198 ORTHO05D006839 3.4e-213 745.3 509 70.7
Gohir.A02G009975 Gossypium hirsutum HOM05D005198 ORTHO05D006839 7.6e-213 744.2 508 71.1
PSO732G0749 Papaver somniferum HOM05D005198 ORTHO05D006839 3.8e-212 741.9 509 69.9
Glyma.02G137200 Glycine max HOM05D005198 ORTHO05D006839 4.9e-212 741.5 526 70.9
Phvul.003G296400 Phaseolus vulgaris HOM05D005198 ORTHO05D006839 4.9e-212 741.5 522 71.1
Gohir.D02G010200 Gossypium hirsutum HOM05D005198 ORTHO05D006839 1.9e-211 739.6 508 71.1
Lj4A14T50 Lonicera japonica HOM05D005198 ORTHO05D006839 1.9e-211 739.6 445 76.6
Dinv07059 Davidia involucrata HOM05D005198 ORTHO05D006839 9.2e-211 737.3 495 71.1
Gorai.005G012500 Gossypium raimondii HOM05D005198 ORTHO05D006839 9.2e-211 737.3 508 70.9
Haze_01365 Corylus avellana HOM05D005198 ORTHO05D006839 2.1e-210 736.1 558 66.5
FAN26G1320 Fragaria x ananassa HOM05D005198 ORTHO05D006839 2.1e-210 736.1 584 63.7
ECA232G1195 Erigeron canadensis HOM05D005198 ORTHO05D006839 2.7e-210 735.7 525 69.1
CsaV3_4G002810 Cucumis sativus L. HOM05D005198 ORTHO05D006839 1.0e-209 733.8 558 65.8
Lalb_Chr09g0328121 Lupinus albus HOM05D005198 ORTHO05D006839 1.0e-209 733.8 491 70.3
Ah.13g073540 Amaranthus hybridus HOM05D005198 ORTHO05D006839 1.7e-209 733.0 525 69.0
Medtr4g087280 Medicago truncatula HOM05D005198 ORTHO05D006839 3.9e-209 731.9 503 70.2
AUR62002390 Chenopodium quinoa HOM05D005198 ORTHO05D006839 1.6e-207 726.5 520 68.1
Psat7g121400 Pisum sativum HOM05D005198 ORTHO05D006839 2.1e-207 726.1 504 70.0
vmacro09048 Vaccinium macrocarpon HOM05D005198 ORTHO05D006839 6.9e-206 721.1 710 55.5
THA.LOC104813938 Tarenaya hassleriana HOM05D005198 ORTHO05D006839 9.0e-206 720.7 500 69.0
AT1G73180 Arabidopsis thaliana HOM05D005198 ORTHO05D006839 1.3e-204 716.8 501 67.7
Sp5g28150 Schrenkiella parvula HOM05D005198 ORTHO05D006839 4.9e-204 714.9 500 66.8
AL2G32950 Arabidopsis lyrata HOM05D005198 ORTHO05D006839 4.2e-203 711.8 501 67.1
Carub.0002s1997 Capsella rubella HOM05D005198 ORTHO05D006839 9.3e-203 710.7 500 66.2
Aa31LG4G3470 Aethionema arabicum HOM05D005198 ORTHO05D006839 1.7e-201 706.4 515 67.0
CARHR066180 Cardamine hirsuta HOM05D005198 ORTHO05D006839 3.0e-201 705.7 501 66.3
COL.COLO4_23329 Corchorus olitorius HOM05D005198 ORTHO05D006839 1.1e-200 703.7 544 63.8
Thhalv10018413m.g Eutrema salsugineum HOM05D005198 ORTHO05D006839 2.5e-200 702.6 500 65.6
C06p34190 Brassica napus HOM05D005198 ORTHO05D006839 3.3e-200 702.2 538 62.8
Lsat_1_v5_gn_9_61481 Lactuca sativa HOM05D005198 ORTHO05D006839 4.3e-200 701.8 511 69.5
Atru.BG.83.p Acer truncatum HOM05D005198 ORTHO05D006839 1.4e-195 686.8 481 69.4
A07p29920 Brassica napus HOM05D005198 ORTHO05D006839 3.2e-195 685.6 503 65.4
ATR0733G245 Amborella trichopoda HOM05D005198 ORTHO05D006839 2.3e-193 679.5 490 66.7
SGA_v2.0_scaffold12G06184 Striga asiatica HOM05D005198 ORTHO05D006839 3.9e-193 678.7 525 66.1
Hund03196 Selenicereus undatus HOM05D005198 ORTHO05D006839 3.7e-191 672.2 524 64.9
BraA07t30630Z Brassica rapa HOM05D005198 ORTHO05D006839 6.2e-191 671.4 502 64.1
Cpa.g.sc9.361 Carica papaya HOM05D005198 ORTHO05D006839 6.2e-191 671.4 507 67.1
HanXRQChr15g0483441 Helianthus annuus HOM05D005198 ORTHO05D006839 1.8e-190 669.8 472 71.0
CDE04G2667 Ceratophyllum demersum HOM05D005198 ORTHO05D006839 5.3e-190 668.3 519 64.4
FvH4_1g25500 Fragaria vesca HOM05D005198 ORTHO05D006839 9.0e-190 667.5 517 65.2
Zm00001eb246620 Zea mays HOM05D005198 ORTHO05D006839 1.5e-189 666.8 524 60.1
CSS0046337 Camellia sinensis var. sinensis HOM05D005198 ORTHO05D006839 3.4e-189 665.6 521 64.5
BolC6t38540H Brassica oleracea HOM05D005198 ORTHO05D006839 2.1e-186 656.4 503 63.2
AUR62023798 Chenopodium quinoa HOM05D005198 ORTHO05D006839 2.7e-186 656.0 533 65.3
Eucgr.L01724 Eucalyptus grandis HOM05D005198 ORTHO05D006839 2.8e-183 646.0 455 69.0
FAN23G1744 Fragaria x ananassa HOM05D005198 ORTHO05D006839 1.5e-181 640.2 523 61.8
FAN19G2119 Fragaria x ananassa HOM05D005198 ORTHO05D006839 9.3e-179 630.9 559 59.6
CiPaw.02G100600 Carya illinoinensis HOM05D005198 ORTHO05D006839 2.3e-177 626.3 399 76.9
Hma1.2p1_0150F.1_g066870 Hydrangea macrophylla HOM05D005198 ORTHO05D006839 2.3e-177 626.3 375 77.3
Dinv33201 Davidia involucrata HOM05D005198 ORTHO05D006839 3.0e-177 625.9 396 77.8
BcaC08g45664 Brassica carinata HOM05D005198 ORTHO05D006839 8.2e-175 617.8 506 61.3
Nn1g09646 Nelumbo nucifera HOM05D005198 ORTHO05D006839 9.7e-168 594.3 373 75.9
Sc25g0002780 Simmondsia chinensis HOM05D005198 ORTHO05D006839 3.2e-155 552.7 345 74.2
Mapoly0011s0080 Marchantia polymorpha HOM05D005198 ORTHO05D006839 5.7e-152 542.0 482 54.8
Pp3c6_14240 Physcomitrium patens HOM05D005198 ORTHO05D006839 4.5e-149 532.3 515 52.2
Lalb_Chr16g0384461 Lupinus albus HOM05D005198 ORTHO05D006839 5.7e-144 515.4 331 72.8
CSS0050366 Camellia sinensis var. sinensis HOM05D005198 ORTHO05D006839 8.2e-143 511.5 389 65.6
unitig_92.g28215 Utricularia gibba HOM05D005198 ORTHO05D006839 6.8e-137 491.9 324 70.4
SMO145G0177 Selaginella moellendorffii HOM05D005198 ORTHO05D006839 1.1e-134 484.6 501 48.9
SEGI_32957 Sequoiadendron giganteum HOM05D005198 ORTHO05D006839 1.1e-131 474.6 385 64.4
CBR_g53754 Chara braunii HOM05D005198 ORTHO05D006839 7.2e-131 471.9 540 46.5
Ca_25383_v3 Cicer arietinum L. HOM05D005198 ORTHO05D006839 1.4e-126 457.6 257 83.3
EL10Ac3g06083 Beta vulgaris HOM05D005198 ORTHO05D006839 1.8e-121 440.7 295 71.9
MBI11_g23940_MAGBIO Magnolia biondii HOM05D005198 ORTHO05D006839 1.1e-118 431.4 289 69.9
DCAR_027527 Daucus carota HOM05D005198 ORTHO05D006839 2.3e-116 423.7 286 69.9
Atru.chr4.1402 Acer truncatum HOM05D005198 ORTHO05D006839 1.4e-113 414.5 254 77.2
Eucgr.H00310 Eucalyptus grandis HOM05D005198 ORTHO05D006839 8.6e-108 395.2 475 47.2
SHI30329 Sapria himalayana HOM05D005198 ORTHO05D000023 1.3e-103 381.3 313 62.0
PRCOL_00000684 Prasinoderma coloniale HOM05D005198 ORTHO05D006839 1.9e-86 324.3 418 40.9
Hma1.2p1_0554F.1_g177930 Hydrangea macrophylla HOM05D005198 ORTHO05D006839 2.1e-82 310.8 331 53.5
MCO01G167 Micromonas commoda HOM05D005198 ORTHO05D006839 8.1e-82 308.9 506 35.2
Lj3g0007177 Lotus japonicus HOM05D005198 ORTHO05D006839 9.0e-81 305.4 211 68.7
Lj6g0012253 Lotus japonicus HOM05D005198 ORTHO05D006839 9.0e-81 305.4 211 68.7
AagrBONN_evm.TU.Sc2ySwM_228.1363 Anthoceros agrestis HOM05D005198 ORTHO05D006839 5.4e-78 296.2 286 52.8
Cre08.g375900 Chlamydomonas reinhardtii HOM05D005198 ORTHO05D006839 1.1e-73 282.0 469 35.8
CAN.G256.23 Capsicum annuum HOM05D005198 ORTHO05D006839 2.8e-66 257.3 152 81.6
unitig_92.g28214 Utricularia gibba HOM05D005198 ORTHO05D006839 4.5e-56 223.4 179 69.3
Nitab4.5_0009616g0020 Nicotiana tabacum HOM05D005198 ORTHO05D006839 2.8e-50 204.1 100 97.0
Ca_18641_v3 Cicer arietinum L. HOM05D005198 ORTHO05D006839 6.3e-50 203.0 487 31.2
DCAR_027526 Daucus carota HOM05D005198 ORTHO05D006839 3.1e-49 200.7 195 57.9
Lalb_Chr16g0384471 Lupinus albus HOM05D005198 ORTHO05D006839 3.2e-46 190.7 149 61.7
MBI11_g23941_MAGBIO Magnolia biondii HOM05D005198 ORTHO05D006839 4.2e-46 190.3 158 62.7
SHI30330 Sapria himalayana HOM05D000105 ORTHO05D000023 7.9e-45 186.0 197 47.2
SEGI_27162 Sequoiadendron giganteum HOM05D005198 ORTHO05D006839 1.6e-32 145.2 130 53.1
CSS0015120 Camellia sinensis var. sinensis HOM05D005198 ORTHO05D006839 5.5e-30 136.7 133 57.9
MBI14_g40932_MAGBIO Magnolia biondii HOM05D005198 ORTHO05D006839 3.6e-29 134.0 85 74.1
BolC3t18675H Brassica oleracea HOM05D005198 ORTHO05D006839 2.4e-25 121.3 101 59.4
Medtr5g091610 Medicago truncatula HOM05D001363 ORTHO05D006839 2.5e-22 111.3 82 64.6
CDE12G0538 Ceratophyllum demersum HOM05D002708 ORTHO05D003516 4.7e-21 107.1 455 24.0
SGA_v2.0_scaffold130G34334 Striga asiatica HOM05D005198 ORTHO05D006839 1.4e-20 105.5 125 48.0
Aa31LG1G4150 Aethionema arabicum HOM05D002708 ORTHO05D003516 1.2e-19 102.4 296 25.0
MBI11_g30564_MAGBIO Magnolia biondii HOM05D005198 ORTHO05D006839 1.2e-19 102.4 59 83.1
MBI03_g14783_MAGBIO Magnolia biondii HOM05D005198 ORTHO05D006839 7.0e-17 93.2 69 63.8
Psat1g217120 Pisum sativum HOM05D005198 ORTHO05D006839 1.2e-16 92.4 66 63.6
CDE01G0349 Ceratophyllum demersum HOM05D002708 ORTHO05D003516 3.5e-16 90.9 455 22.6
Glyma.03G132500 Glycine max HOM05D005198 ORTHO05D006839 1.7e-15 88.6 74 56.8
Os02g0606100 Oryza sativa ssp. japonica HOM05D005198 ORTHO05D006839 5.0e-15 87.0 120 49.2
SGA_v2.0_scaffold649G53360 Striga asiatica HOM05D005198 ORTHO05D006839 2.8e-13 81.3 48 75.0
MBI07_g28641_MAGBIO Magnolia biondii HOM05D000992 ORTHO05D001928 3.6e-13 80.9 51 74.5
Lsat_1_v5_gn_5_150841 Lactuca sativa HOM05D005198 ORTHO05D004031 1.0e-12 79.3 45 80.0
Dinv33202 Davidia involucrata HOM05D005198 ORTHO05D006839 5.2e-12 77.0 55 63.6
COL.COLO4_29149 Corchorus olitorius HOM05D005198 ORTHO05D006839 7.5e-11 73.2 79 54.4
Lj4A14T51 Lonicera japonica HOM05D005198 ORTHO05D006839 6.3e-10 70.1 58 81.0
C02p30710 Brassica napus HOM05D005198 ORTHO05D042013 1.0e-07 62.8 119 35.3
BolC2t09126H Brassica oleracea HOM05D005198 ORTHO05D042013 2.3e-07 61.6 119 34.5


User provided reference genes

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