Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g013670.3 Solanum lycopersicum HOM05D005188 ORTHO05D006153 7.2e-84 313.9 164 100.0
Sopen08g004510 Solanum pennellii HOM05D005188 ORTHO05D006153 5.7e-81 304.3 164 98.2
PGSC0003DMG400005805 Solanum tuberosum HOM05D005188 ORTHO05D006153 4.2e-76 288.1 171 90.6
CAN.G792.16 Capsicum annuum HOM05D005188 ORTHO05D006153 7.2e-68 260.8 168 83.3
COL.COLO4_35748 Corchorus olitorius HOM05D005188 ORTHO05D006153 2.9e-61 238.8 173 77.5
Migut.H00702 Erythranthe guttata HOM05D005188 ORTHO05D006153 1.5e-60 236.5 172 76.2
Gohir.A11G226800 Gossypium hirsutum HOM05D005188 ORTHO05D006153 1.9e-60 236.1 175 76.0
Gohir.D11G230800 Gossypium hirsutum HOM05D005188 ORTHO05D006153 1.9e-60 236.1 175 76.0
Nitab4.5_0000673g0170 Nicotiana tabacum HOM05D005188 ORTHO05D006153 3.2e-60 235.3 172 76.7
CANSAT01G0911 Cannabis sativa HOM05D005188 ORTHO05D006153 2.1e-59 232.6 173 76.3
Cpa.g.sc3.345 Carica papaya HOM05D005188 ORTHO05D006153 2.7e-59 232.3 175 73.7
Sabra05G0052500 Salix brachista HOM05D005188 ORTHO05D006153 2.7e-59 232.3 173 76.3
Peaxi162Scf01257g00019 Petunia axillaris HOM05D005188 ORTHO05D006153 4.7e-59 231.5 180 69.4
Potri.005G063300 Populus trichocarpa HOM05D005188 ORTHO05D006153 6.1e-59 231.1 173 75.1
Ah.02g121530 Amaranthus hybridus HOM05D005188 ORTHO05D006153 8.0e-59 230.7 168 73.8
MBI06_g39404_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 8.0e-59 230.7 172 72.7
SalBow1G2748 Salvia bowleyana HOM05D005188 ORTHO05D006153 8.0e-59 230.7 168 76.2
MD15G1441800 Malus domestica HOM05D005188 ORTHO05D006153 1.4e-58 229.9 170 73.5
Thecc.01G132900 Theobroma cacao HOM05D005188 ORTHO05D006153 1.4e-58 229.9 174 74.7
Potri.007G105900 Populus trichocarpa HOM05D005188 ORTHO05D006153 1.8e-58 229.6 174 75.3
Gorai.003G066700 Gossypium raimondii HOM05D005188 ORTHO05D006153 2.3e-58 229.2 182 73.1
CiPaw.03G121400 Carya illinoinensis HOM05D005188 ORTHO05D006153 4.0e-58 228.4 176 72.2
Lj1g0024625 Lotus japonicus HOM05D005188 ORTHO05D006153 6.8e-58 227.6 169 76.3
Gohir.A05G384500 Gossypium hirsutum HOM05D005188 ORTHO05D006153 8.8e-58 227.3 173 73.4
SGA_v2.0_scaffold370G50114 Striga asiatica HOM05D005188 ORTHO05D006153 8.8e-58 227.3 166 74.7
Haze_25240 Corylus avellana HOM05D005188 ORTHO05D006153 1.2e-57 226.9 177 72.9
TWI75G0084 Tripterygium wilfordii HOM05D005188 ORTHO05D006153 1.2e-57 226.9 170 74.7
Dinv24366 Davidia involucrata HOM05D005188 ORTHO05D006153 1.5e-57 226.5 172 73.3
Aqoxy5G02315 Aquilegia oxysepala HOM05D005188 ORTHO05D006153 2.0e-57 226.1 174 75.3
Glyma.04G215800 Glycine max HOM05D005188 ORTHO05D006153 2.0e-57 226.1 168 73.2
ClCG01G015380 Citrullus lanatus HOM05D005188 ORTHO05D006153 2.6e-57 225.7 172 72.7
Manes.12G156000 Manihot esculenta HOM05D005188 ORTHO05D006153 2.6e-57 225.7 174 74.7
AUR62017881 Chenopodium quinoa HOM05D005188 ORTHO05D006153 3.4e-57 225.3 170 72.4
Glyma.06G150300 Glycine max HOM05D005188 ORTHO05D006153 3.4e-57 225.3 167 73.1
Gorai.012G035200 Gossypium raimondii HOM05D005188 ORTHO05D006153 3.4e-57 225.3 174 73.0
Hma1.2p1_0476F.1_g160790 Hydrangea macrophylla HOM05D005188 ORTHO05D006153 3.4e-57 225.3 173 75.1
Lalb_Chr13g0296451 Lupinus albus HOM05D005188 ORTHO05D006153 3.4e-57 225.3 177 73.4
Cc10_g12590 Coffea canephora HOM05D005188 ORTHO05D006153 4.4e-57 224.9 171 73.1
MELO3C008060.2 Cucumis melo HOM05D005188 ORTHO05D006153 5.7e-57 224.6 172 72.1
Medtr3g095540 Medicago truncatula HOM05D005188 ORTHO05D006153 5.7e-57 224.6 177 75.1
Cfa002897 Carpinus fangiana HOM05D005188 ORTHO05D006153 7.5e-57 224.2 177 71.8
C09p09640 Brassica napus HOM05D005188 ORTHO05D006153 9.8e-57 223.8 170 72.4
Ca_16917_v3 Cicer arietinum L. HOM05D005188 ORTHO05D006153 1.3e-56 223.4 172 73.3
CsaV3_6G041600 Cucumis sativus L. HOM05D005188 ORTHO05D006153 1.3e-56 223.4 172 71.5
Sp2g27110 Schrenkiella parvula HOM05D005188 ORTHO05D006153 1.3e-56 223.4 172 72.7
unitig_899.g14682 Utricularia gibba HOM05D005188 ORTHO05D006153 1.3e-56 223.4 168 69.6
CiPaw.04G081900 Carya illinoinensis HOM05D005188 ORTHO05D006153 1.7e-56 223.0 178 71.9
Aa31LG1G17870 Aethionema arabicum HOM05D005188 ORTHO05D006153 2.2e-56 222.6 173 71.7
CSS0010064 Camellia sinensis var. sinensis HOM05D005188 ORTHO05D006153 2.2e-56 222.6 176 72.7
CSS0045275 Camellia sinensis var. sinensis HOM05D005188 ORTHO05D006153 2.2e-56 222.6 176 72.7
Ciclev10002687m.g Citrus clementina HOM05D005188 ORTHO05D006153 2.2e-56 222.6 174 73.0
Prupe.4G271200 Prunus persica HOM05D005188 ORTHO05D006153 2.2e-56 222.6 174 73.0
Hund23270 Selenicereus undatus HOM05D005188 ORTHO05D006153 2.2e-56 222.6 178 73.0
MD01G1004300 Malus domestica HOM05D005188 ORTHO05D006153 2.8e-56 222.2 171 72.5
PGR008G0006 Punica granatum HOM05D005188 ORTHO05D006153 2.8e-56 222.2 167 70.7
PGR119G0239 Punica granatum HOM05D005188 ORTHO05D006153 2.8e-56 222.2 167 70.7
Actinidia06616 Actinidia chinensis HOM05D005188 ORTHO05D006153 3.7e-56 221.9 172 70.9
Sed0019160 Sechium edule HOM05D005188 ORTHO05D006153 3.7e-56 221.9 174 70.7
TPR.G18740 Trifolium pratense HOM05D005188 ORTHO05D006153 3.7e-56 221.9 175 72.6
MSTRG.2649 Avicennia marina HOM05D005188 ORTHO05D006153 4.8e-56 221.5 168 71.4
Thhalv10005005m.g Eutrema salsugineum HOM05D005188 ORTHO05D006153 4.8e-56 221.5 171 71.9
QL02p001672 Quercus lobata HOM05D005188 ORTHO05D006153 4.8e-56 221.5 173 71.1
TAR381G0300 Trochodendron aralioides HOM05D005188 ORTHO05D006153 4.8e-56 221.5 175 70.9
arahy.Tifrunner.gnm1.ann1.DJM1RY Arachis hypogaea HOM05D005188 ORTHO05D006153 1.4e-55 219.9 175 74.3
Nn2g12180 Nelumbo nucifera HOM05D005188 ORTHO05D006153 1.4e-55 219.9 175 71.4
CARHR277950 Cardamine hirsuta HOM05D005188 ORTHO05D006153 1.8e-55 219.5 171 71.9
BcaC01g02658 Brassica carinata HOM05D005188 ORTHO05D006153 3.1e-55 218.8 172 70.9
BcaC01g02659 Brassica carinata HOM05D005188 ORTHO05D006153 3.1e-55 218.8 172 70.9
Lj2A607T35 Lonicera japonica HOM05D005188 ORTHO05D006153 3.1e-55 218.8 171 71.9
TWI79G1553 Tripterygium wilfordii HOM05D005188 ORTHO05D006153 3.1e-55 218.8 170 71.2
arahy.Tifrunner.gnm1.ann1.V5WWJ8 Arachis hypogaea HOM05D005188 ORTHO05D006153 4.1e-55 218.4 175 73.7
BcaB07g29717 Brassica carinata HOM05D005188 ORTHO05D006153 4.1e-55 218.4 170 70.6
Oeu037826.1 Olea europaea HOM05D005188 ORTHO05D006153 4.1e-55 218.4 168 70.2
AL8G41300 Arabidopsis lyrata HOM05D005188 ORTHO05D006153 5.4e-55 218.0 172 70.9
BcaB02g09793 Brassica carinata HOM05D005188 ORTHO05D006153 5.4e-55 218.0 171 71.3
C02p63110 Brassica napus HOM05D005188 ORTHO05D006153 5.4e-55 218.0 170 70.6
BolC2t12383H Brassica oleracea HOM05D005188 ORTHO05D006153 5.4e-55 218.0 170 70.6
Lj4g0001203 Lotus japonicus HOM05D005188 ORTHO05D006153 5.4e-55 218.0 167 73.7
AT5G64040 Arabidopsis thaliana HOM05D005188 ORTHO05D006153 9.1e-55 217.2 172 70.3
BcaC03g18240 Brassica carinata HOM05D005188 ORTHO05D006153 9.1e-55 217.2 170 70.6
Sabra07G0086700 Salix brachista HOM05D005188 ORTHO05D006153 9.1e-55 217.2 172 70.9
Sed0010246 Sechium edule HOM05D005188 ORTHO05D006153 1.2e-54 216.9 170 71.2
VMungo0251G2948 Vigna mungo HOM05D005188 ORTHO05D006153 1.6e-54 216.5 172 68.6
MBI03_g42548_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 2.7e-54 215.7 172 69.2
Carub.0008s2482 Capsella rubella HOM05D005188 ORTHO05D006153 3.5e-54 215.3 172 69.2
HanXRQChr04g0107551 Helianthus annuus HOM05D005188 ORTHO05D006153 3.5e-54 215.3 170 72.4
Phvul.002G269400 Phaseolus vulgaris HOM05D005188 ORTHO05D006153 3.5e-54 215.3 173 70.5
CDE08G0648 Ceratophyllum demersum HOM05D005188 ORTHO05D006153 5.9e-54 214.5 173 69.4
A06p30750 Brassica napus HOM05D005188 ORTHO05D006153 7.7e-54 214.2 172 69.8
BolC9t53875H Brassica oleracea HOM05D005188 ORTHO05D006153 1.0e-53 213.8 181 67.4
Psat5g063680 Pisum sativum HOM05D005188 ORTHO05D006153 1.0e-53 213.8 172 72.7
FvH4_1g24360 Fragaria vesca HOM05D005188 ORTHO05D006153 1.3e-53 213.4 166 71.7
FAN19G1208 Fragaria x ananassa HOM05D005188 ORTHO05D006153 1.3e-53 213.4 166 71.7
DCAR_001211 Daucus carota HOM05D005188 ORTHO05D006153 2.9e-53 212.2 168 69.0
Lsat_1_v5_gn_1_10061 Lactuca sativa HOM05D005188 ORTHO05D006153 6.5e-53 211.1 171 70.2
FAN28G1395 Fragaria x ananassa HOM05D002517 ORTHO05D003040 1.9e-52 209.5 164 70.7
MBI06_g27435_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 2.5e-52 209.1 162 73.5
ATR0987G005 Amborella trichopoda HOM05D005188 ORTHO05D006153 9.5e-52 207.2 179 64.8
ECA247G1960 Erigeron canadensis HOM05D005188 ORTHO05D006153 9.5e-52 207.2 166 71.7
CDE02G4401 Ceratophyllum demersum HOM05D005188 ORTHO05D006153 1.6e-51 206.5 173 68.2
RcHm_v2.0_Chr2g0120891 Rosa chinensis HOM05D005188 ORTHO05D006153 3.6e-51 205.3 166 69.3
HPP92_019391 Vanilla planifolia HOM05D005188 ORTHO05D006153 3.6e-51 205.3 172 68.0
THA.LOC104800083 Tarenaya hassleriana HOM05D005188 ORTHO05D006153 4.7e-51 204.9 174 65.5
vmacro12795 Vaccinium macrocarpon HOM05D005188 ORTHO05D006153 6.1e-51 204.5 176 65.9
FAN26G2437 Fragaria x ananassa HOM05D002517 ORTHO05D006153 1.0e-50 203.8 166 70.5
Atru.chr4.905 Acer truncatum HOM05D005188 ORTHO05D006153 1.4e-50 203.4 170 65.9
Rhsim10G0133700 Rhododendron simsii HOM05D005188 ORTHO05D006153 1.4e-50 203.4 177 67.8
PSO541G2775 Papaver somniferum HOM05D005188 ORTHO05D006153 4.0e-50 201.8 168 65.5
GSVIVG01026478001 Vitis vinifera HOM05D005188 ORTHO05D006153 3.4e-49 198.7 167 65.3
PSO675G9377 Papaver somniferum HOM05D005188 ORTHO05D006153 9.8e-49 197.2 168 63.7
EL10Ac6g15302 Beta vulgaris HOM05D005188 ORTHO05D006153 2.8e-48 195.7 126 79.4
BolC3t18491H Brassica oleracea HOM05D005188 ORTHO05D006153 3.1e-47 192.2 176 64.8
Oeu050119.1 Olea europaea HOM05D005188 ORTHO05D006153 1.2e-46 190.3 167 61.1
Os12g0189400 Oryza sativa ssp. japonica HOM05D005188 ORTHO05D006153 5.0e-45 184.9 108 83.3
A09p08510 Brassica napus HOM05D005188 ORTHO05D006153 1.5e-44 183.3 170 63.5
BraA09t36500Z Brassica rapa HOM05D005188 ORTHO05D006153 1.5e-44 183.3 170 63.5
Zm00001eb409220 Zea mays HOM05D005188 ORTHO05D006153 2.8e-43 179.1 164 59.8
Zm00001eb138650 Zea mays HOM05D005188 ORTHO05D006153 3.0e-42 175.6 166 58.4
SEGI_16120 Sequoiadendron giganteum HOM05D005188 ORTHO05D006153 2.4e-39 166.0 133 61.7
Duzib264G0557 Durio zibethinus HOM05D005188 ORTHO05D006153 7.0e-39 164.5 145 69.0
Eucgr.I00200 Eucalyptus grandis HOM05D005188 ORTHO05D006153 1.3e-37 160.2 145 66.9
Duzib147G0711 Durio zibethinus HOM05D005188 ORTHO05D006153 3.3e-36 155.6 145 67.6
C03p62290 Brassica napus HOM05D005188 ORTHO05D006153 7.3e-36 154.5 142 66.2
Sc16g0003820 Simmondsia chinensis HOM05D005188 ORTHO05D006153 1.4e-34 150.2 141 63.1
BraA06t26017Z Brassica rapa HOM05D005188 ORTHO05D006153 1.8e-34 149.8 142 64.8
SMO144G0055 Selaginella moellendorffii HOM05D005188 ORTHO05D006153 2.6e-33 146.0 82 79.3
BcaB08g36594 Brassica carinata HOM05D005188 ORTHO05D006153 4.6e-30 135.2 74 86.5
BolC2t07163H Brassica oleracea HOM05D005188 ORTHO05D006153 1.0e-29 134.0 74 85.1
BcaB04g17222 Brassica carinata HOM05D005188 ORTHO05D006153 1.3e-29 133.7 121 59.5
BolC7t41311H Brassica oleracea HOM05D005188 ORTHO05D006153 1.3e-29 133.7 72 87.5
BcaC04g18786 Brassica carinata HOM05D005188 ORTHO05D006153 5.0e-29 131.7 74 83.8
AUR62003566 Chenopodium quinoa HOM05D005188 ORTHO05D006153 1.8e-26 123.2 167 49.7
Duzib187G0538 Durio zibethinus HOM05D005188 ORTHO05D006153 9.9e-25 117.5 128 62.5
Mapoly0116s0042 Marchantia polymorpha HOM05D005188 ORTHO05D006153 1.1e-23 114.0 145 44.1
Cre02.g082500 Chlamydomonas reinhardtii HOM05D005188 ORTHO05D006153 7.1e-23 111.3 107 58.9
AagrBONN_evm.TU.Sc2ySwM_362.2803 Anthoceros agrestis HOM05D005188 ORTHO05D006153 3.0e-21 105.9 95 63.2
BcaC03g13890 Brassica carinata HOM05D005188 ORTHO05D006153 8.6e-21 104.4 74 68.9
Nitab4.5_0005544g0070 Nicotiana tabacum HOM05D005188 ORTHO05D006153 2.5e-20 102.8 108 63.0
PRCOL_00004565 Prasinoderma coloniale HOM05D005188 ORTHO05D006153 1.3e-16 90.5 78 57.7
MCO09G058 Micromonas commoda HOM05D005188 ORTHO05D006153 1.9e-15 86.7 103 47.6
BraA02t09233Z Brassica rapa HOM05D005188 ORTHO05D006153 3.2e-15 85.9 113 55.8
CBR_g45633 Chara braunii HOM05D005188 ORTHO05D006153 9.2e-15 84.3 135 40.0
Gohir.D04G031000 Gossypium hirsutum HOM05D006465 ORTHO05D008207 1.6e-11 73.6 101 52.5
A02p43130 Brassica napus HOM05D005188 ORTHO05D006153 2.1e-11 73.2 98 54.1
Nn5g28540 Nelumbo nucifera HOM05D005188 ORTHO05D006153 4.7e-11 72.0 103 56.3
C02p10930 Brassica napus HOM05D005188 ORTHO05D006153 9.9e-09 64.3 30 90.0


User provided reference genes

Program Settings