Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g008530.1 Solanum lycopersicum HOM05D003990 ORTHO05D004925 5.5e-198 694.1 352 100.0
Sopen08g004380 Solanum pennellii HOM05D003990 ORTHO05D004925 7.2e-190 667.2 355 95.8
PGSC0003DMG400005851 Solanum tuberosum HOM05D003990 ORTHO05D004925 1.8e-188 662.5 355 95.5
Nitab4.5_0000673g0130 Nicotiana tabacum HOM05D003990 ORTHO05D004925 2.8e-149 532.3 341 79.5
Nitab4.5_0001962g0040 Nicotiana tabacum HOM05D003990 ORTHO05D004925 1.4e-148 530.0 325 82.8
Peaxi162Scf00102g01878 Petunia axillaris HOM05D003990 ORTHO05D000951 1.8e-140 503.1 352 77.3
CAN.G792.28 Capsicum annuum HOM05D003990 ORTHO05D004925 4.0e-140 501.9 313 80.8
Oeu022039.1 Olea europaea HOM05D003990 ORTHO05D004925 4.4e-131 471.9 349 72.2
Dinv38683 Davidia involucrata HOM05D003990 ORTHO05D001284 3.7e-130 468.8 289 79.9
Cc08_g16660 Coffea canephora HOM05D003990 ORTHO05D004925 9.2e-129 464.2 363 69.7
TAR629G1984 Trochodendron aralioides HOM05D003990 ORTHO05D004925 6.6e-127 458.0 363 66.9
CSS0021441 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 5.6e-126 454.9 364 68.1
Cfa011935 Carpinus fangiana HOM05D003990 ORTHO05D004925 7.3e-126 454.5 279 77.8
CSS0010282 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 9.5e-126 454.1 366 67.8
Hma1.2p1_0212F.1_g090230 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 8.1e-125 451.1 389 66.3
DCAR_009092 Daucus carota HOM05D003990 ORTHO05D004925 3.1e-124 449.1 343 68.2
Prupe.5G128500 Prunus persica HOM05D003990 ORTHO05D004925 2.0e-123 446.4 279 77.4
Rhsim02G0251300 Rhododendron simsii HOM05D003990 ORTHO05D004925 2.6e-123 446.0 366 68.3
Lsat_1_v5_gn_3_13681 Lactuca sativa HOM05D003990 ORTHO05D004925 4.4e-123 445.3 352 67.0
Gohir.A02G097800 Gossypium hirsutum HOM05D003990 ORTHO05D004925 7.6e-123 444.5 347 66.9
Atru.chr9.1910 Acer truncatum HOM05D003990 ORTHO05D004925 2.2e-122 443.0 321 71.0
MD06G1117400 Malus domestica HOM05D003990 ORTHO05D004925 2.9e-122 442.6 357 64.4
Sabra03G0105900 Salix brachista HOM05D003990 ORTHO05D004925 4.9e-122 441.8 354 65.5
MSTRG.13719 Avicennia marina HOM05D003990 ORTHO05D004925 1.9e-121 439.9 344 68.9
Gohir.D03G086700 Gossypium hirsutum HOM05D003990 ORTHO05D004925 4.1e-121 438.7 357 65.3
Potri.003G145700 Populus trichocarpa HOM05D003990 ORTHO05D004925 4.1e-121 438.7 357 65.3
Duzib205G1059 Durio zibethinus HOM05D003990 ORTHO05D004925 9.2e-121 437.6 357 65.5
FAN13G1570 Fragaria x ananassa HOM05D003990 ORTHO05D004925 9.2e-121 437.6 351 65.8
Gorai.003G075400 Gossypium raimondii HOM05D003990 ORTHO05D004925 1.2e-120 437.2 357 65.3
Aqoxy7G00029 Aquilegia oxysepala HOM05D003990 ORTHO05D004925 2.7e-120 436.0 351 66.4
QL02p029212 Quercus lobata HOM05D003990 ORTHO05D004925 2.7e-120 436.0 279 74.2
Manes.11G125600 Manihot esculenta HOM05D003990 ORTHO05D004925 3.5e-120 435.6 280 75.7
CANSAT21G0847 Cannabis sativa HOM05D003990 ORTHO05D004925 6.0e-120 434.9 352 65.6
ECA246G0738 Erigeron canadensis HOM05D003273 ORTHO05D004023 7.8e-120 434.5 282 75.2
COL.COLO4_10785 Corchorus olitorius HOM05D003990 ORTHO05D004925 3.0e-119 432.6 334 67.1
RcHm_v2.0_Chr7g0186781 Rosa chinensis HOM05D003990 ORTHO05D004925 3.9e-119 432.2 334 66.8
Cpa.g.sc175.15 Carica papaya HOM05D003990 ORTHO05D004925 6.6e-119 431.4 357 65.8
CiPaw.12G078400 Carya illinoinensis HOM05D003990 ORTHO05D004925 8.6e-119 431.0 361 64.0
MBI12_g30966_MAGBIO Magnolia biondii HOM05D003990 ORTHO05D004925 1.1e-118 430.6 349 66.5
Eucgr.D01688 Eucalyptus grandis HOM05D003990 ORTHO05D004925 2.5e-118 429.5 360 65.0
Sc01g0010590 Simmondsia chinensis HOM05D003990 ORTHO05D004925 3.3e-118 429.1 352 65.9
Haze_14077 Corylus avellana HOM05D003990 ORTHO05D004925 3.6e-117 425.6 340 66.2
TWI60G1311 Tripterygium wilfordii HOM05D003990 ORTHO05D004925 6.2e-117 424.9 317 67.8
Thecc.03G222400 Theobroma cacao HOM05D003990 ORTHO05D004925 2.4e-116 422.9 354 63.8
Carub.0006s2953 Capsella rubella HOM05D003990 ORTHO05D004925 3.1e-116 422.5 315 69.5
HanXRQChr06g0166861 Helianthus annuus HOM05D003990 ORTHO05D004925 8.9e-116 421.0 361 63.2
Lalb_Chr17g0338551 Lupinus albus HOM05D003990 ORTHO05D004925 8.9e-116 421.0 359 63.8
Lj8A201T86 Lonicera japonica HOM05D003990 ORTHO05D004925 1.2e-115 420.6 263 78.3
Ah.12g053140 Amaranthus hybridus HOM05D003990 ORTHO05D004925 2.0e-115 419.9 353 63.7
AT4G10750 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 3.4e-115 419.1 313 68.4
CsaV3_3G000920 Cucumis sativus L. HOM05D003990 ORTHO05D004925 3.4e-115 419.1 306 69.3
MELO3C013779.2 Cucumis melo HOM05D003990 ORTHO05D004925 5.8e-115 418.3 306 69.3
PSO384G4439 Papaver somniferum HOM05D003990 ORTHO05D004925 5.8e-115 418.3 288 72.2
AL6G44800 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 7.6e-115 417.9 313 68.1
Sp6g06750 Schrenkiella parvula HOM05D003990 ORTHO05D004925 1.7e-114 416.8 318 67.6
Thhalv10029450m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 3.8e-114 415.6 365 61.1
CARHR255860 Cardamine hirsuta HOM05D003990 ORTHO05D004925 4.9e-114 415.2 318 67.0
Ciclev10020878m.g Citrus clementina HOM05D003990 ORTHO05D004925 4.9e-114 415.2 363 61.4
Lj2g0026928 Lotus japonicus HOM05D003990 ORTHO05D004925 3.2e-113 412.5 354 61.9
BcaB01g01511 Brassica carinata HOM05D003990 ORTHO05D004925 9.3e-113 411.0 358 63.4
A09p28480 Brassica napus HOM05D003990 ORTHO05D004925 2.1e-112 409.8 361 61.8
TPR.G36963 Trifolium pratense HOM05D003990 ORTHO05D004925 2.1e-112 409.8 281 70.8
Aa31LG9G11320 Aethionema arabicum HOM05D003990 ORTHO05D004925 7.8e-112 407.9 354 62.7
BraA09t38413Z Brassica rapa HOM05D003990 ORTHO05D004925 1.0e-111 407.5 361 61.2
Sed0016376 Sechium edule HOM05D003990 ORTHO05D004925 1.0e-111 407.5 353 61.8
PSO135G0880 Papaver somniferum HOM05D003990 ORTHO05D004925 1.3e-111 407.1 364 61.5
Medtr1g031790 Medicago truncatula HOM05D003990 ORTHO05D004925 3.0e-111 406.0 306 65.7
BcaC04g21069 Brassica carinata HOM05D003990 ORTHO05D004925 8.7e-111 404.4 370 60.5
C09p36050 Brassica napus HOM05D003990 ORTHO05D004925 8.7e-111 404.4 370 60.5
BolC9t56444H Brassica oleracea HOM05D003990 ORTHO05D004925 8.7e-111 404.4 370 60.5
CDE04G2232 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 7.3e-110 401.4 274 69.7
THA.LOC104813054 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 6.2e-109 398.3 296 66.6
Nn1g00366 Nelumbo nucifera HOM05D003990 ORTHO05D004925 1.8e-108 396.7 352 61.9
VMungo1215G2928 Vigna mungo HOM05D003990 ORTHO05D004925 2.0e-107 393.3 331 62.2
Phvul.003G021600 Phaseolus vulgaris HOM05D003990 ORTHO05D004925 1.4e-105 387.1 330 60.6
FvH4_5g11021 Fragaria vesca HOM05D003990 ORTHO05D004925 2.5e-102 376.3 358 58.1
Cfa011937 Carpinus fangiana HOM05D003990 ORTHO05D004925 6.2e-101 371.7 306 62.4
Oeu022040.1 Olea europaea HOM05D003990 ORTHO05D004925 3.1e-100 369.4 261 67.8
ATR0620G013 Amborella trichopoda HOM05D003990 ORTHO05D004925 2.6e-99 366.3 360 58.6
Duzib084G0313 Durio zibethinus HOM05D003990 ORTHO05D004925 5.8e-99 365.2 254 66.5
HPP92_008886 Vanilla planifolia HOM05D003990 ORTHO05D004925 7.6e-99 364.8 368 55.7
QL02p029171 Quercus lobata HOM05D003990 ORTHO05D004925 9.9e-99 364.4 263 67.3
CiPaw.11G113600 Carya illinoinensis HOM05D003990 ORTHO05D004925 8.4e-98 361.3 261 69.3
vmacro11510 Vaccinium macrocarpon HOM05D003990 ORTHO05D004925 2.4e-97 359.8 350 59.1
AUR62019907 Chenopodium quinoa HOM05D003990 ORTHO05D004925 1.2e-96 357.5 247 71.7
EL10Ac5g12450 Beta vulgaris HOM05D003990 ORTHO05D004925 3.5e-96 355.9 249 71.5
Zm00001eb103220 Zea mays HOM05D003990 ORTHO05D004925 3.5e-96 355.9 329 57.1
Os09g0529900 Oryza sativa ssp. japonica HOM05D003990 ORTHO05D004925 1.0e-95 354.4 335 55.8
QL02p029158 Quercus lobata HOM05D003990 ORTHO05D004925 1.0e-95 354.4 264 65.9
AUR62007043 Chenopodium quinoa HOM05D003990 ORTHO05D004925 8.7e-95 351.3 248 69.8
COL.COLO4_10784 Corchorus olitorius HOM05D003990 ORTHO05D004925 4.3e-94 349.0 254 65.4
Psat6g044760 Pisum sativum HOM05D003990 ORTHO05D004925 3.7e-93 345.9 242 69.8
Ca_12579_v3 Cicer arietinum L. HOM05D003990 ORTHO05D004925 1.8e-92 343.6 241 68.0
EL10Ac5g12452 Beta vulgaris HOM05D003990 ORTHO05D004925 6.5e-90 335.1 270 59.3
Sc01g0010580 Simmondsia chinensis HOM05D003990 ORTHO05D004925 6.5e-90 335.1 262 63.4
AUR62007042 Chenopodium quinoa HOM05D003990 ORTHO05D004925 2.5e-89 333.2 257 62.6
AUR62019906 Chenopodium quinoa HOM05D003990 ORTHO05D004925 4.2e-89 332.4 267 60.3
SEGI_30656 Sequoiadendron giganteum HOM05D003990 ORTHO05D004925 4.2e-89 332.4 258 63.6
Ah.12g053130 Amaranthus hybridus HOM05D003990 ORTHO05D004925 1.0e-87 327.8 257 61.5
arahy.Tifrunner.gnm1.ann1.LQZ0GD Arachis hypogaea HOM05D003990 ORTHO05D004925 1.0e-87 327.8 261 58.6
arahy.Tifrunner.gnm1.ann1.ZCAA4H Arachis hypogaea HOM05D003990 ORTHO05D004925 1.0e-87 327.8 261 58.6
Migut.O00797 Erythranthe guttata HOM05D003990 ORTHO05D004925 1.3e-87 327.4 262 70.6
A01p15340 Brassica napus HOM05D003990 ORTHO05D004925 6.3e-85 318.5 255 58.0
BolC1t01855H Brassica oleracea HOM05D003990 ORTHO05D004925 1.8e-84 317.0 255 57.6
Thhalv10026820m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 3.1e-84 316.2 294 53.1
THA.LOC104815209 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 3.1e-84 316.2 269 56.9
Aa31LG6G7280 Aethionema arabicum HOM05D003990 ORTHO05D004925 4.5e-83 312.4 255 58.0
arahy.Tifrunner.gnm1.ann1.3SR05H Arachis hypogaea HOM05D003990 ORTHO05D004925 7.6e-83 311.6 261 56.3
arahy.Tifrunner.gnm1.ann1.UPJ447 Arachis hypogaea HOM05D003990 ORTHO05D004925 7.6e-83 311.6 261 56.3
C01p19290 Brassica napus HOM05D003990 ORTHO05D004925 2.2e-82 310.1 303 52.5
BolC1t01856H Brassica oleracea HOM05D003990 ORTHO05D004925 2.2e-82 310.1 288 51.4
BraA01t01479Z Brassica rapa HOM05D003990 ORTHO05D004925 2.2e-82 310.1 268 54.1
BcaC09g50914 Brassica carinata HOM05D003990 ORTHO05D004925 5.0e-82 308.9 268 53.7
BcaNung01112 Brassica carinata HOM05D003990 ORTHO05D004925 5.0e-82 308.9 265 53.6
AL7G29210 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 8.4e-82 308.1 255 56.5
Carub.0007s1702 Capsella rubella HOM05D003990 ORTHO05D004925 1.1e-81 307.8 261 57.1
C01p19300 Brassica napus HOM05D003990 ORTHO05D004925 1.4e-81 307.4 268 53.7
A01p15350 Brassica napus HOM05D003990 ORTHO05D004925 1.6e-80 303.9 268 53.4
arahy.Tifrunner.gnm1.ann1.IT3SMZ Arachis hypogaea HOM05D003990 ORTHO05D004925 2.1e-80 303.5 257 55.6
arahy.Tifrunner.gnm1.ann1.Y0R09G Arachis hypogaea HOM05D003990 ORTHO05D004925 2.1e-80 303.5 257 55.6
COL.COLO4_10783 Corchorus olitorius HOM05D003990 ORTHO05D004925 3.0e-79 299.7 229 63.3
BraA01t01478Z Brassica rapa HOM05D003990 ORTHO05D004925 1.1e-76 291.2 255 55.7
BcaC09g50915 Brassica carinata HOM05D003990 ORTHO05D004925 1.0e-74 284.6 231 56.7
AagrBONN_evm.TU.Sc2ySwM_117.985 Anthoceros agrestis HOM05D003990 ORTHO05D004925 3.2e-73 279.6 251 55.4
CARHR006280 Cardamine hirsuta HOM05D003990 ORTHO05D004925 4.2e-73 279.3 230 57.0
Thhalv10027122m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 7.2e-73 278.5 255 53.7
Mapoly0141s0022 Marchantia polymorpha HOM05D003990 ORTHO05D004925 4.6e-72 275.8 275 54.9
Pp3c17_4700 Physcomitrium patens HOM05D003990 ORTHO05D004925 6.1e-72 275.4 252 55.6
Haze_09152 Corylus avellana HOM05D003990 ORTHO05D004925 1.5e-70 270.8 197 66.5
Glyma.07G166800 Glycine max HOM05D003990 ORTHO05D004925 2.8e-69 266.5 179 72.1
arahy.Tifrunner.gnm1.ann1.E0UK9T Arachis hypogaea HOM05D003990 ORTHO05D004925 2.6e-67 260.0 257 52.1
arahy.Tifrunner.gnm1.ann1.VJUY72 Arachis hypogaea HOM05D003990 ORTHO05D004925 3.4e-67 259.6 257 52.1
Sc16g0011220 Simmondsia chinensis HOM05D003990 ORTHO05D004925 2.9e-66 256.5 256 51.6
CARHR006270 Cardamine hirsuta HOM05D003990 ORTHO05D004925 1.4e-65 254.2 229 54.6
arahy.Tifrunner.gnm1.ann1.UE00R2 Arachis hypogaea HOM05D003990 ORTHO05D004925 2.5e-65 253.4 249 51.4
unitig_52.g17196 Utricularia gibba HOM05D003990 ORTHO05D004925 3.9e-63 246.1 190 65.8
Thecc.03G222500 Theobroma cacao HOM05D003990 ORTHO05D004925 2.6e-62 243.4 172 66.3
Zm00001eb207470 Zea mays HOM05D003990 ORTHO05D004925 7.7e-59 231.9 244 50.8
CDE07G1159 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 2.9e-58 229.9 336 43.2
QL02p029191 Quercus lobata HOM05D003990 ORTHO05D004925 3.8e-58 229.6 404 37.4
CARHR231480 Cardamine hirsuta HOM05D003990 ORTHO05D004925 2.3e-55 220.3 179 57.5
arahy.Tifrunner.gnm1.ann1.QV8INP Arachis hypogaea HOM05D003990 ORTHO05D004925 5.7e-54 215.7 252 45.6
Potri.001G084900 Populus trichocarpa HOM05D003990 ORTHO05D004925 3.5e-51 206.5 135 71.9
Sp7g22040 Schrenkiella parvula HOM05D003990 ORTHO05D004925 3.8e-50 203.0 203 50.7
AT4G24080 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 2.1e-48 197.2 166 54.8
FAN18G2679 Fragaria x ananassa HOM05D003990 ORTHO05D004925 1.0e-47 194.9 137 67.2
CAN.G479.14 Capsicum annuum HOM05D003990 ORTHO05D004925 1.4e-47 194.5 133 75.2
Aa31LG6G7290 Aethionema arabicum HOM05D003990 ORTHO05D004925 4.4e-46 189.5 160 56.2
Zm00001eb366680 Zea mays HOM05D003990 ORTHO05D004925 1.0e-42 178.3 244 43.9
Hma1.2p1_0440F.1_g153760 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 1.4e-36 157.9 200 47.0
PRCOL_00003301 Prasinoderma coloniale HOM05D003990 ORTHO05D004925 7.7e-35 152.1 237 37.1
AagrBONN_evm.TU.Sc2ySwM_228.2729 Anthoceros agrestis HOM05D003990 ORTHO05D004925 2.0e-30 137.5 183 42.6
Zm00001eb314200 Zea mays HOM05D003990 ORTHO05D004925 1.8e-28 131.0 243 35.4
Duzib068G0872 Durio zibethinus HOM05D003990 ORTHO05D004925 1.0e-26 125.2 93 63.4
Haze_16436 Corylus avellana HOM05D003990 ORTHO05D004925 6.6e-26 122.5 196 40.3
arahy.Tifrunner.gnm1.ann1.R8SYM2 Arachis hypogaea HOM05D003990 ORTHO05D004925 6.2e-24 115.9 122 50.8
Thhalv10027505m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 1.4e-23 114.8 110 48.2
FAN18G2309 Fragaria x ananassa HOM05D003990 ORTHO05D004925 1.5e-22 111.3 149 49.7
arahy.Tifrunner.gnm1.ann1.S5BUNY Arachis hypogaea HOM05D003990 ORTHO05D004925 2.9e-21 107.1 65 80.0
Migut.E00635 Erythranthe guttata HOM05D003990 ORTHO05D004925 7.8e-19 99.0 91 58.2
Cre01.g015550 Chlamydomonas reinhardtii HOM05D003990 ORTHO05D004925 1.0e-18 98.6 181 34.3
arahy.Tifrunner.gnm1.ann1.228U7D Arachis hypogaea HOM05D003990 ORTHO05D004925 3.9e-18 96.7 68 72.1
Cfa021766 Carpinus fangiana HOM05D003990 ORTHO05D004925 1.9e-17 94.4 216 30.6
unitig_52.g17197 Utricularia gibba HOM05D003990 ORTHO05D004925 3.3e-17 93.6 111 55.9
EL10Ac6g14266 Beta vulgaris HOM05D003990 ORTHO05D004925 3.6e-16 90.1 69 69.6
Prupe.2G052300 Prunus persica HOM05D003990 ORTHO05D004925 1.4e-15 88.2 66 60.6
Hma1.2p1_0212F.1_g090250 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 2.9e-13 80.5 50 70.0
QL02p029165 Quercus lobata HOM05D003990 ORTHO05D010865 8.3e-13 79.0 58 67.2
AagrBONN_evm.TU.Sc2ySwM_344.3329 Anthoceros agrestis HOM05D003990 ORTHO05D071624 1.9e-12 77.8 285 28.1
AT4G24070 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 3.9e-10 70.1 63 50.8
QL02p029160 Quercus lobata HOM05D003990 ORTHO05D004925 9.5e-09 65.5 64 51.6
VMungo0647G2082 Vigna mungo HOM05D003990 ORTHO05D004925 1.4e-07 61.6 66 48.5


User provided reference genes

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