Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g008350.3 Solanum lycopersicum HOM05D005115 ORTHO05D005703 5.6e-99 364.4 197 100.0
Nitab4.5_0002231g0060 Nicotiana tabacum HOM05D005115 ORTHO05D005703 9.5e-83 310.5 224 77.7
Peaxi162Scf00102g01844 Petunia axillaris HOM05D005115 ORTHO05D005703 6.2e-82 307.8 197 86.8
Nitab4.5_0007367g0090 Nicotiana tabacum HOM05D005115 ORTHO05D005703 2.0e-80 302.8 224 75.9
Dinv37526 Davidia involucrata HOM05D005115 ORTHO05D005703 1.6e-69 266.5 197 76.1
Cc08_g16140 Coffea canephora HOM05D005115 ORTHO05D005703 2.7e-69 265.8 197 74.1
Oeu055028.2 Olea europaea HOM05D005115 ORTHO05D005703 1.8e-65 253.1 244 60.2
Dinv38826 Davidia involucrata HOM05D007126 ORTHO05D008974 1.2e-64 250.4 194 74.2
Rhsim02G0244500 Rhododendron simsii HOM05D005115 ORTHO05D005703 6.6e-60 234.6 198 70.7
Cfa011998 Carpinus fangiana HOM05D005115 ORTHO05D005703 1.6e-58 229.9 199 65.8
Glyma.01G225300 Glycine max HOM05D005115 ORTHO05D005703 1.8e-57 226.5 204 65.2
Glyma.11G017800 Glycine max HOM05D005115 ORTHO05D005703 3.1e-57 225.7 204 64.7
Hma1.2p1_0440F.1_g153350 Hydrangea macrophylla HOM05D005115 ORTHO05D005703 5.3e-57 224.9 173 74.0
vmacro11350 Vaccinium macrocarpon HOM05D005115 ORTHO05D005703 5.3e-57 224.9 242 59.1
Thecc.03G298900 Theobroma cacao HOM05D005115 ORTHO05D005703 9.0e-57 224.2 207 62.8
TAR375G0477 Trochodendron aralioides HOM05D005115 ORTHO05D005703 9.0e-57 224.2 196 68.4
Duzib068G0330 Durio zibethinus HOM05D005115 ORTHO05D005703 2.9e-55 219.2 202 63.4
Gohir.A09G190300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 4.9e-55 218.4 208 61.5
CiPaw.11G120600 Carya illinoinensis HOM05D005115 ORTHO05D005703 1.4e-54 216.9 200 65.5
Gohir.D09G185000 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.9e-54 216.5 206 61.2
TAR375G0257 Trochodendron aralioides HOM05D005115 ORTHO05D005703 1.9e-54 216.5 199 67.3
VMungo1215G1874 Vigna mungo HOM05D005115 ORTHO05D005703 1.9e-54 216.5 205 63.9
Duzib084G1297 Durio zibethinus HOM05D005115 ORTHO05D005703 3.2e-54 215.7 205 62.0
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 4.2e-54 215.3 198 65.7
Phvul.002G164100 Phaseolus vulgaris HOM05D005115 ORTHO05D005703 5.4e-54 214.9 205 61.5
Gorai.006G207500 Gossypium raimondii HOM05D005115 ORTHO05D005703 7.1e-54 214.5 207 60.4
Duzib205G0660 Durio zibethinus HOM05D005115 ORTHO05D005703 9.3e-54 214.2 204 62.3
Actinidia22166 Actinidia chinensis HOM05D005115 ORTHO05D005703 3.5e-53 212.2 189 67.7
Sopen08g004230 Solanum pennellii HOM05D005115 ORTHO05D005703 7.9e-53 211.1 119 98.3
PGSC0003DMG400005793 Solanum tuberosum HOM05D005115 ORTHO05D005703 1.3e-52 210.3 119 98.3
Sc22g0004980 Simmondsia chinensis HOM05D005115 ORTHO05D005703 5.6e-51 204.9 198 61.1
arahy.Tifrunner.gnm1.ann1.V4I9JE Arachis hypogaea HOM05D005115 ORTHO05D005703 1.3e-50 203.8 204 61.8
LjContig00312_ERROPOS870357g0004531 Lotus japonicus HOM05D005115 ORTHO05D005703 6.2e-50 201.4 204 59.3
Gohir.D11G024900 Gossypium hirsutum HOM05D005115 ORTHO05D005703 8.1e-50 201.1 204 61.3
Migut.A00633 Erythranthe guttata HOM05D005115 ORTHO05D005703 1.4e-49 200.3 200 64.5
Gorai.007G026700 Gossypium raimondii HOM05D005115 ORTHO05D005703 1.8e-49 199.9 204 60.8
arahy.Tifrunner.gnm1.ann1.M14U5A Arachis hypogaea HOM05D005115 ORTHO05D005703 3.1e-49 199.1 204 61.8
CiPaw.12G082200 Carya illinoinensis HOM05D005115 ORTHO05D005703 3.1e-49 199.1 200 62.0
Gohir.A11G025300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 3.1e-49 199.1 204 60.3
Prupe.5G120800 Prunus persica HOM05D005115 ORTHO05D005703 5.3e-49 198.4 208 61.5
SalBow6G1704 Salvia bowleyana HOM05D005115 ORTHO05D005703 2.6e-48 196.1 263 50.6
SalBow8G0540 Salvia bowleyana HOM05D005115 ORTHO05D005703 2.6e-48 196.1 263 50.6
CAN.G792.37 Capsicum annuum HOM05D005115 ORTHO05D005703 5.8e-48 194.9 119 89.9
Ca_17482_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 3.8e-47 192.2 210 55.7
Ca_17506_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 3.8e-47 192.2 210 55.7
FAN18G1353 Fragaria x ananassa HOM05D005115 ORTHO05D005703 6.5e-47 191.4 205 60.0
HanXRQChr03g0083441 Helianthus annuus HOM05D005115 ORTHO05D005703 1.4e-46 190.3 189 62.4
Medtr8g099425 Medicago truncatula HOM05D005115 ORTHO05D005703 1.9e-46 189.9 212 57.5
Haze_09072 Corylus avellana HOM05D005115 ORTHO05D005703 4.2e-46 188.7 298 45.3
FvH4_5g04680 Fragaria vesca HOM05D005115 ORTHO05D005703 9.3e-46 187.6 205 59.0
TWI81G0084 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 1.6e-45 186.8 202 58.4
Aqoxy7G00093 Aquilegia oxysepala HOM05D005115 ORTHO05D005703 3.5e-45 185.7 197 61.4
Sed0016945 Sechium edule HOM05D005115 ORTHO05D005703 3.5e-45 185.7 206 56.8
Cpa.g.sc79.29 Carica papaya HOM05D005115 ORTHO05D005703 1.8e-44 183.3 204 56.9
CsaV3_4G006640 Cucumis sativus L. HOM05D005115 ORTHO05D005703 1.8e-44 183.3 188 61.7
ClCG07G011580 Citrullus lanatus HOM05D005115 ORTHO05D005703 2.3e-44 183.0 179 62.0
PGR042G1877 Punica granatum HOM05D005115 ORTHO05D005703 3.0e-44 182.6 197 57.9
TPR.G3414 Trifolium pratense HOM05D005115 ORTHO05D005703 3.0e-44 182.6 205 57.1
ECA240G1127 Erigeron canadensis HOM05D005115 ORTHO05D005703 3.9e-44 182.2 198 59.1
TWI15G1136 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 6.7e-44 181.4 204 57.4
Potri.003G140700 Populus trichocarpa HOM05D005115 ORTHO05D005703 2.5e-43 179.5 201 56.2
CANSAT21G0870 Cannabis sativa HOM05D005115 ORTHO05D005703 3.3e-43 179.1 226 54.9
Atru.chr9.1972 Acer truncatum HOM05D005115 ORTHO05D005703 5.7e-43 178.3 185 62.2
Atru.chr9.1986 Acer truncatum HOM05D005115 ORTHO05D005703 5.7e-43 178.3 185 62.2
HanXRQChr13g0415351 Helianthus annuus HOM05D005115 ORTHO05D005703 9.6e-43 177.6 158 66.5
Lsat_1_v5_gn_6_83921 Lactuca sativa HOM05D005115 ORTHO05D005703 9.6e-43 177.6 199 57.8
FAN13G0546 Fragaria x ananassa HOM05D005115 ORTHO05D005703 1.6e-42 176.8 205 56.6
FAN13G3196 Fragaria x ananassa HOM05D005115 ORTHO05D005703 1.6e-42 176.8 205 56.6
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 2.8e-42 176.0 188 57.4
CSS0002161 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 1.8e-41 173.3 119 79.8
CSS0007380 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 1.8e-41 173.3 119 79.8
Eucgr.D01748 Eucalyptus grandis HOM05D005115 ORTHO05D005703 2.4e-41 172.9 201 54.2
Potri.001G090900 Populus trichocarpa HOM05D005115 ORTHO05D005703 2.4e-41 172.9 201 56.2
Sabra01G0067300 Salix brachista HOM05D005115 ORTHO05D005703 2.4e-41 172.9 201 55.7
AUR62010847 Chenopodium quinoa HOM05D000034 ORTHO05D005703 3.1e-41 172.6 196 54.6
Manes.02G009400 Manihot esculenta HOM05D005115 ORTHO05D005703 1.5e-40 170.2 207 53.6
ECA240G3401 Erigeron canadensis HOM05D000003 ORTHO05D000004 2.6e-40 169.5 197 57.4
RcHm_v2.0_Chr7g0194701 Rosa chinensis HOM05D005115 ORTHO05D005703 3.8e-39 165.6 190 57.4
MBI06_g08472_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 1.9e-38 163.3 196 56.6
PGR031G1480 Punica granatum HOM05D005115 ORTHO05D005703 9.3e-38 161.0 199 52.3
Carub.0006s2972 Capsella rubella HOM05D005115 ORTHO05D005703 2.7e-37 159.5 202 51.5
MSTRG.25681 Avicennia marina HOM05D005115 ORTHO05D005703 2.3e-36 156.4 119 75.6
Thhalv10028955m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 2.3e-36 156.4 207 49.8
Hund14216 Selenicereus undatus HOM05D005115 ORTHO05D005703 8.7e-36 154.5 201 50.7
AT4G10970 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 1.5e-35 153.7 208 48.6
CDE04G3646 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 3.3e-35 152.5 181 53.0
BcaC01g04648 Brassica carinata HOM05D005115 ORTHO05D005703 4.3e-35 152.1 207 51.2
GSVIVG01019540001 Vitis vinifera HOM05D005115 ORTHO05D005703 7.4e-35 151.4 117 71.8
TAR636G3146 Trochodendron aralioides HOM05D005115 ORTHO05D005703 1.3e-34 150.6 123 68.3
CARHR255630 Cardamine hirsuta HOM05D005115 ORTHO05D005703 2.8e-34 149.4 215 47.0
BcaB01g02726 Brassica carinata HOM05D005115 ORTHO05D005703 4.8e-34 148.7 204 48.5
Sed0001802 Sechium edule HOM05D005115 ORTHO05D005703 1.4e-33 147.1 199 50.8
unitig_0.g2839 Utricularia gibba HOM05D005115 ORTHO05D005703 2.4e-33 146.4 143 60.1
PSO135G0387 Papaver somniferum HOM05D005115 ORTHO05D005703 3.1e-33 146.0 207 51.2
AL6G45070 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 4.1e-33 145.6 212 47.6
C03p35310 Brassica napus HOM05D005115 ORTHO05D005703 9.0e-33 144.4 202 50.0
PSO384G2123 Papaver somniferum HOM05D005115 ORTHO05D005703 9.0e-33 144.4 210 51.4
EL10Ac5g12921 Beta vulgaris HOM05D005115 ORTHO05D005703 1.5e-32 143.7 254 44.5
MELO3C016298.2 Cucumis melo HOM05D005115 ORTHO05D005703 2.6e-32 142.9 225 46.2
HPP92_002918 Vanilla planifolia HOM05D005115 ORTHO05D005703 2.6e-32 142.9 203 49.8
Sp6g06500 Schrenkiella parvula HOM05D005115 ORTHO05D005703 3.4e-32 142.5 195 50.3
THA.LOC104815118 Tarenaya hassleriana HOM05D005115 ORTHO05D005703 1.9e-30 136.7 212 48.1
AUR62019846 Chenopodium quinoa HOM05D005115 ORTHO05D005703 2.5e-30 136.3 138 56.5
Psat7g026000 Pisum sativum HOM05D005115 ORTHO05D005703 4.6e-29 132.1 119 63.9
Aa31LG9G11140 Aethionema arabicum HOM05D005115 ORTHO05D005703 2.3e-28 129.8 256 39.8
COL.COLO4_10710 Corchorus olitorius HOM05D005115 ORTHO05D005703 2.3e-28 129.8 116 63.8
CDE03G0211 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 3.0e-28 129.4 151 52.3
Sabra03G0101600 Salix brachista HOM05D000906 ORTHO05D000713 8.8e-28 127.9 290 36.6
A03p29200 Brassica napus HOM05D005115 ORTHO05D005703 1.5e-27 127.1 228 44.7
Hund11387 Selenicereus undatus HOM05D005115 ORTHO05D005703 1.5e-27 127.1 308 35.7
MBI07_g07104_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 2.5e-27 126.3 174 50.0
MD06G1108200 Malus domestica HOM05D005115 ORTHO05D005703 1.3e-23 114.0 97 64.9
BolC3t15841H Brassica oleracea HOM05D005115 ORTHO05D005703 2.9e-23 112.8 120 57.5
Lalb_Chr05g0211561 Lupinus albus HOM05D005115 ORTHO05D005703 1.9e-22 110.2 98 60.2
SEGI_32593 Sequoiadendron giganteum HOM05D005115 ORTHO05D005703 4.2e-22 109.0 184 48.4
Carub.0007s1718 Capsella rubella HOM05D005115 ORTHO05D005703 2.1e-21 106.7 196 42.9
AT4G23910 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 3.6e-21 105.9 197 42.1
A01p15220 Brassica napus HOM05D005115 ORTHO05D005703 1.0e-20 104.4 198 40.4
Sp7g21880 Schrenkiella parvula HOM05D005115 ORTHO05D005703 1.4e-20 104.0 196 39.3
BcaNung01098 Brassica carinata HOM05D005115 ORTHO05D005703 6.7e-20 101.7 200 38.5
AL7G29420 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 5.7e-19 98.6 197 42.1
Thhalv10026287m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 5.7e-19 98.6 195 39.5
SHI06967 Sapria himalayana HOM05D005115 ORTHO05D005703 9.7e-19 97.8 111 51.4
Os08g0374200 Oryza sativa ssp. japonica HOM05D005115 ORTHO05D005703 1.8e-17 93.6 101 56.4
Zm00001eb178470 Zea mays HOM05D005115 ORTHO05D005703 3.1e-17 92.8 178 40.4
arahy.Tifrunner.gnm1.ann1.ULQ1VN Arachis hypogaea HOM05D005115 ORTHO05D005703 3.5e-16 89.4 69 65.2
Oeu029936.1 Olea europaea HOM05D005115 ORTHO05D005703 5.9e-16 88.6 63 73.0
ATR0602G161 Amborella trichopoda HOM05D005115 ORTHO05D005703 1.3e-15 87.4 255 33.7
Gohir.D12G237999 Gossypium hirsutum HOM05D005115 ORTHO05D005703 8.5e-15 84.7 108 48.1
Gohir.D12G238133 Gossypium hirsutum HOM05D005115 ORTHO05D005703 8.5e-15 84.7 108 48.1
Gorai.008G254900 Gossypium raimondii HOM05D005115 ORTHO05D005703 8.5e-15 84.7 108 48.1
Zm00001eb042700 Zea mays HOM05D005115 ORTHO05D005703 3.2e-14 82.8 122 45.9
BcaC09g50931 Brassica carinata HOM05D005115 ORTHO05D005703 7.2e-14 81.6 255 32.5
C01p19150 Brassica napus HOM05D005115 ORTHO05D005703 1.2e-13 80.9 120 43.3
CARHR231320 Cardamine hirsuta HOM05D005115 ORTHO05D005703 1.6e-13 80.5 117 46.2
BolC1t01841H Brassica oleracea HOM05D005115 ORTHO05D005703 2.1e-13 80.1 120 43.3
DCAR_029907 Daucus carota HOM05D005115 ORTHO05D005703 2.1e-13 80.1 73 68.5
BraA01t01460Z Brassica rapa HOM05D005115 ORTHO05D005703 2.3e-12 76.6 118 40.7
QL02p030259 Quercus lobata HOM05D005115 ORTHO05D005703 8.8e-12 74.7 88 52.3
CSS0029994 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 3.3e-11 72.8 81 56.8
CSS0045410 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 3.3e-11 72.8 81 56.8
Lsat_1_v5_gn_1_118201 Lactuca sativa HOM05D009751 ORTHO05D005703 1.7e-10 70.5 90 47.8
Lj4g0005021 Lotus japonicus HOM05D005115 ORTHO05D005703 2.8e-10 69.7 167 35.9
Lalb_Chr05g0211571 Lupinus albus HOM05D005115 ORTHO05D005703 2.8e-10 69.7 79 51.9
FAN04G1053 Fragaria x ananassa HOM05D005115 ORTHO05D005703 8.2e-10 68.2 67 56.7
Lsat_1_v5_gn_8_68541 Lactuca sativa HOM05D005115 ORTHO05D018183 1.1e-09 67.8 86 48.8
MD06G1108300 Malus domestica HOM05D005115 ORTHO05D005703 9.1e-09 64.7 59 62.7
AagrBONN_evm.TU.Sc2ySwM_344.5012 Anthoceros agrestis HOM05D028980 ORTHO05D026613 1.5e-06 57.4 93 47.3


User provided reference genes

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