Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g008160.4 Solanum lycopersicum HOM05D004497 ORTHO05D005539 2.7e-228 795.0 416 100.0
Sopen08g004010 Solanum pennellii HOM05D004497 ORTHO05D005539 2.3e-219 765.4 416 96.2
PGSC0003DMG400005828 Solanum tuberosum HOM05D004497 ORTHO05D005539 4.3e-218 761.1 417 96.6
Nitab4.5_0002978g0150 Nicotiana tabacum HOM05D004497 ORTHO05D005539 2.5e-197 692.2 415 84.8
Nitab4.5_0000903g0080 Nicotiana tabacum HOM05D004497 ORTHO05D005539 2.5e-194 682.2 415 86.5
Peaxi162Scf00078g00424 Petunia axillaris HOM05D004497 ORTHO05D005539 3.7e-169 598.6 339 86.1
Actinidia25597 Actinidia chinensis HOM05D004497 ORTHO05D005539 9.8e-154 547.4 412 65.3
HanXRQChr05g0153981 Helianthus annuus HOM05D004497 ORTHO05D005539 7.0e-152 541.2 376 69.9
Lsat_1_v5_gn_5_13520 Lactuca sativa HOM05D004497 ORTHO05D005539 7.0e-152 541.2 379 69.1
SalBow8G1477 Salvia bowleyana HOM05D004497 ORTHO05D005539 2.0e-151 539.7 413 66.1
COL.COLO4_28066 Corchorus olitorius HOM05D004497 ORTHO05D005539 8.6e-150 534.3 379 69.1
Haze_07247 Corylus avellana HOM05D004497 ORTHO05D005539 1.9e-149 533.1 358 70.9
Rhsim08G0187300 Rhododendron simsii HOM05D004497 ORTHO05D005539 9.5e-149 530.8 438 62.1
Cfa013402 Carpinus fangiana HOM05D004497 ORTHO05D005539 1.2e-148 530.4 359 70.2
SGA_v2.0_scaffold215G42316 Striga asiatica HOM05D004497 ORTHO05D005539 1.0e-147 527.3 409 65.0
Cc05_g04600 Coffea canephora HOM05D004497 ORTHO05D005539 1.8e-147 526.6 409 63.8
SalBow5G0098 Salvia bowleyana HOM05D004497 ORTHO05D005539 6.8e-147 524.6 439 62.0
SalBow5G4825 Salvia bowleyana HOM05D004497 ORTHO05D005539 6.8e-147 524.6 439 62.0
ECA246G4485 Erigeron canadensis HOM05D004497 ORTHO05D005539 1.5e-146 523.5 383 67.1
PGR083G2085 Punica granatum HOM05D004497 ORTHO05D005539 2.6e-146 522.7 375 67.7
CSS0032894 Camellia sinensis var. sinensis HOM05D004497 ORTHO05D005539 3.4e-146 522.3 380 67.9
CsaV3_1G009480 Cucumis sativus L. HOM05D004497 ORTHO05D005539 3.4e-146 522.3 355 69.6
Eucgr.C01065 Eucalyptus grandis HOM05D004497 ORTHO05D005539 3.4e-146 522.3 430 62.1
Thecc.03G125300 Theobroma cacao HOM05D004497 ORTHO05D005539 5.7e-146 521.5 356 70.5
CiPaw.08G116800 Carya illinoinensis HOM05D004497 ORTHO05D005539 7.5e-146 521.2 454 59.5
GSVIVG01013111001 Vitis vinifera HOM05D004497 ORTHO05D005539 1.3e-145 520.4 381 66.7
RcHm_v2.0_Chr7g0190661 Rosa chinensis HOM05D004497 ORTHO05D005539 1.7e-145 520.0 362 68.8
Atru.chr3.3406 Acer truncatum HOM05D004497 ORTHO05D005539 2.2e-145 519.6 429 61.1
Migut.I00519 Erythranthe guttata HOM05D004497 ORTHO05D005539 8.3e-145 517.7 372 68.3
Eucgr.K00186 Eucalyptus grandis HOM05D004497 ORTHO05D005539 1.4e-144 516.9 409 64.5
QL10p004476 Quercus lobata HOM05D004497 ORTHO05D005539 1.4e-144 516.9 361 68.1
Gohir.D09G246800 Gossypium hirsutum HOM05D004497 ORTHO05D005539 1.8e-144 516.5 421 63.2
Sed0020059 Sechium edule HOM05D004497 ORTHO05D005539 3.2e-144 515.8 376 65.7
Sc10g0010400 Simmondsia chinensis HOM05D004497 ORTHO05D005539 3.2e-144 515.8 355 69.6
QL93p0225_0015 Quercus lobata HOM05D004497 ORTHO05D005539 4.1e-144 515.4 361 68.1
Gohir.A09G246200 Gossypium hirsutum HOM05D004497 ORTHO05D005539 9.2e-144 514.2 439 61.5
ClCG03G003620 Citrullus lanatus HOM05D004497 ORTHO05D005539 1.2e-143 513.8 404 62.4
FvH4_5g07760 Fragaria vesca HOM05D004497 ORTHO05D005539 1.2e-143 513.8 401 64.3
Phvul.003G017500 Phaseolus vulgaris HOM05D004497 ORTHO05D005539 1.2e-143 513.8 376 64.4
QL07p000007 Quercus lobata HOM05D004497 ORTHO05D005539 1.2e-143 513.8 361 68.1
Gorai.006G271300 Gossypium raimondii HOM05D004497 ORTHO05D005539 2.0e-143 513.1 356 70.5
Potri.015G092400 Populus trichocarpa HOM05D004497 ORTHO05D005539 2.0e-143 513.1 378 66.7
FAN18G2816 Fragaria x ananassa HOM05D004497 ORTHO05D005539 2.7e-143 512.7 401 64.1
TWI14G0260 Tripterygium wilfordii HOM05D004497 ORTHO05D005539 5.9e-143 511.5 421 60.1
Lj9A476T57 Lonicera japonica HOM05D004497 ORTHO05D005539 5.0e-142 508.4 340 71.2
CANSAT56G3508 Cannabis sativa HOM05D004497 ORTHO05D005539 6.6e-142 508.1 359 69.1
QL04p081834 Quercus lobata HOM05D004497 ORTHO05D005539 8.6e-142 507.7 375 65.3
vmacro20468 Vaccinium macrocarpon HOM05D004497 ORTHO05D005539 1.1e-141 507.3 457 56.9
Ciclev10020238m.g Citrus clementina HOM05D004497 ORTHO05D005539 1.5e-141 506.9 359 68.8
Duzib205G0501 Durio zibethinus HOM05D004497 ORTHO05D005539 1.5e-141 506.9 383 66.3
FAN08G0052 Fragaria x ananassa HOM05D004497 ORTHO05D005539 1.9e-141 506.5 402 63.9
Sabra15G0114200 Salix brachista HOM05D004497 ORTHO05D005539 2.5e-141 506.1 374 65.8
TPR.G34454 Trifolium pratense HOM05D004497 ORTHO05D005539 2.5e-141 506.1 377 65.8
TAR625G0069 Trochodendron aralioides HOM05D004497 ORTHO05D005539 2.5e-141 506.1 419 62.8
Lalb_Chr03g0040831 Lupinus albus HOM05D004497 ORTHO05D005539 3.3e-141 505.8 360 66.1
VMungo0331G1674 Vigna mungo HOM05D004497 ORTHO05D005539 3.3e-141 505.8 378 63.2
MD14G1161100 Malus domestica HOM05D004497 ORTHO05D005539 4.3e-141 505.4 403 63.5
FAN04G2053 Fragaria x ananassa HOM05D004497 ORTHO05D005539 7.3e-141 504.6 372 66.9
Glyma.07G068400 Glycine max HOM05D004497 ORTHO05D005539 1.2e-140 503.8 358 67.9
Glyma.16G034400 Glycine max HOM05D004497 ORTHO05D005539 4.7e-140 501.9 419 60.1
Gohir.A12G276900 Gossypium hirsutum HOM05D004497 ORTHO05D005539 6.2e-140 501.5 365 68.5
Potri.012G095100 Populus trichocarpa HOM05D004497 ORTHO05D005539 1.4e-139 500.4 376 64.9
Ca_09070_v3 Cicer arietinum L. HOM05D004497 ORTHO05D005539 2.3e-139 499.6 355 67.6
Psat3g028160 Pisum sativum HOM05D004497 ORTHO05D005539 2.3e-139 499.6 376 64.6
MSTRG.22910 Avicennia marina HOM05D004497 ORTHO05D005539 4.0e-139 498.8 412 62.9
arahy.Tifrunner.gnm1.ann1.16KDXT Arachis hypogaea HOM05D004497 ORTHO05D005539 6.8e-139 498.0 375 65.9
Dinv11148 Davidia involucrata HOM05D004497 ORTHO05D005539 6.8e-139 498.0 397 64.7
arahy.Tifrunner.gnm1.ann1.0L2FVX Arachis hypogaea HOM05D004497 ORTHO05D005539 1.2e-138 497.3 375 65.6
Oeu005018.3 Olea europaea HOM05D004497 ORTHO05D005539 3.4e-138 495.7 446 59.2
TAR629G1275 Trochodendron aralioides HOM05D004497 ORTHO05D005539 3.4e-138 495.7 370 66.5
Ca_04603_v3 Cicer arietinum L. HOM05D004497 ORTHO05D005539 5.8e-138 495.0 355 67.0
MELO3C002347.2 Cucumis melo HOM05D004497 ORTHO05D005539 7.5e-138 494.6 340 67.9
THA.LOC104820611 Tarenaya hassleriana HOM05D004497 ORTHO05D005539 9.8e-138 494.2 371 63.3
EL10As4g23444 Beta vulgaris HOM05D004497 ORTHO05D005539 6.4e-137 491.5 358 67.9
Lj1g0020744 Lotus japonicus HOM05D004497 ORTHO05D005539 1.1e-136 490.7 359 67.4
PSO063G4711 Papaver somniferum HOM05D004497 ORTHO05D005539 2.4e-136 489.6 372 64.8
Hund03342 Selenicereus undatus HOM05D004497 ORTHO05D005539 2.4e-136 489.6 359 67.7
THA.LOC104814264 Tarenaya hassleriana HOM05D004497 ORTHO05D005539 7.0e-136 488.0 356 64.3
PSO782G0077 Papaver somniferum HOM05D004497 ORTHO05D005539 1.2e-135 487.3 372 64.5
Medtr7g106650 Medicago truncatula HOM05D004497 ORTHO05D005539 1.6e-135 486.9 355 65.9
Ah.08g212900 Amaranthus hybridus HOM05D004497 ORTHO05D005539 2.7e-135 486.1 376 65.2
MD06G1147200 Malus domestica HOM05D004497 ORTHO05D005539 1.0e-134 484.2 410 60.7
Aqoxy5G03475 Aquilegia oxysepala HOM05D004497 ORTHO05D005539 3.9e-134 482.3 374 63.1
Manes.14G053800 Manihot esculenta HOM05D004497 ORTHO05D005539 3.3e-133 479.2 361 66.2
Dinv04858 Davidia involucrata HOM05D004497 ORTHO05D005539 5.6e-133 478.4 321 71.7
Thhalv10007651m.g Eutrema salsugineum HOM05D004497 ORTHO05D005539 9.5e-133 477.6 362 63.5
Sp1g25270 Schrenkiella parvula HOM05D004497 ORTHO05D005539 4.7e-132 475.3 362 63.3
AL1G43130 Arabidopsis lyrata HOM05D004497 ORTHO05D005539 8.1e-132 474.6 359 64.9
CDE08G0729 Ceratophyllum demersum HOM05D004497 ORTHO05D005539 8.1e-132 474.6 376 61.7
Nn4g26409 Nelumbo nucifera HOM05D004497 ORTHO05D005539 8.1e-132 474.6 382 63.6
AT1G29320 Arabidopsis thaliana HOM05D004497 ORTHO05D005539 1.1e-131 474.2 362 64.1
A08p25140 Brassica napus HOM05D004497 ORTHO05D005539 1.1e-131 474.2 362 61.9
BcaC01g00099 Brassica carinata HOM05D004497 ORTHO05D005539 1.4e-131 473.8 362 62.4
C03p75750 Brassica napus HOM05D004497 ORTHO05D005539 1.8e-131 473.4 362 62.4
FAN13G1359 Fragaria x ananassa HOM05D004497 ORTHO05D005539 3.1e-131 472.6 379 62.5
CARHR028640 Cardamine hirsuta HOM05D004497 ORTHO05D005539 5.2e-131 471.9 362 62.7
BolC3t19835H Brassica oleracea HOM05D004497 ORTHO05D005539 8.9e-131 471.1 362 62.2
Carub.0001s2754 Capsella rubella HOM05D004497 ORTHO05D005539 1.5e-130 470.3 380 61.6
MBI11_g15865_MAGBIO Magnolia biondii HOM05D004497 ORTHO05D005539 1.5e-130 470.3 380 61.1
BraA09t39216Z Brassica rapa HOM05D004497 ORTHO05D005539 2.6e-130 469.5 376 60.6
C05p28100 Brassica napus HOM05D004497 ORTHO05D005539 9.8e-130 467.6 376 60.4
BolC5t31537H Brassica oleracea HOM05D004497 ORTHO05D005539 9.8e-130 467.6 374 60.2
BcaC05g26958 Brassica carinata HOM05D004497 ORTHO05D005539 1.3e-129 467.2 376 60.4
BcaB03g12154 Brassica carinata HOM05D004497 ORTHO05D005539 6.4e-129 464.9 363 61.4
Aa31LG6G6220 Aethionema arabicum HOM05D004497 ORTHO05D005539 1.4e-128 463.8 356 62.9
BcaB07g32523 Brassica carinata HOM05D004497 ORTHO05D005539 3.5e-127 459.1 372 60.5
BraA08t34469Z Brassica rapa HOM05D004497 ORTHO05D005539 6.6e-126 454.9 389 57.6
A09p36980 Brassica napus HOM05D004497 ORTHO05D005539 1.1e-125 454.1 374 58.8
Zm00001eb105680 Zea mays HOM05D004497 ORTHO05D005539 1.4e-123 447.2 362 61.3
DCAR_012679 Daucus carota HOM05D004497 ORTHO05D005539 7.6e-122 441.4 355 62.0
ATR0171G018 Amborella trichopoda HOM05D004497 ORTHO05D005539 1.6e-119 433.7 368 58.4
AUR62025903 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.0e-118 431.0 367 59.1
HPP92_023861 Vanilla planifolia HOM05D004497 ORTHO05D005539 1.2e-116 424.1 359 57.4
Prupe.1G584300 Prunus persica HOM05D004497 ORTHO05D005539 1.1e-115 421.0 398 55.8
TWI39G1139 Tripterygium wilfordii HOM05D004497 ORTHO05D005539 1.4e-115 420.6 462 53.7
CiPaw.11G010200 Carya illinoinensis HOM05D004497 ORTHO05D005539 1.7e-110 403.7 280 69.3
Cpa.g.sc166.23 Carica papaya HOM05D004497 ORTHO05D005539 3.0e-110 402.9 291 65.3
Cfa014010 Carpinus fangiana HOM05D004497 ORTHO05D005539 3.9e-110 402.5 442 50.7
SEGI_30468 Sequoiadendron giganteum HOM05D004497 ORTHO05D005539 6.6e-110 401.7 414 49.3
AUR62025086 Chenopodium quinoa HOM05D004497 ORTHO05D005539 5.6e-109 398.7 344 58.4
Duzib068G0683 Durio zibethinus HOM05D004497 ORTHO05D005539 2.1e-108 396.7 291 67.7
Nitab4.5_0003013g0030 Nicotiana tabacum HOM05D004497 ORTHO05D005539 2.2e-105 386.7 415 55.2
AUR62032705 Chenopodium quinoa HOM05D004497 ORTHO05D005539 5.4e-104 382.1 388 51.0
Sed0003097 Sechium edule HOM05D004497 ORTHO05D005539 3.0e-102 376.3 268 67.2
SHI10599 Sapria himalayana HOM05D004497 ORTHO05D005539 5.3e-99 365.5 322 56.2
unitig_699.g19657 Utricularia gibba HOM05D004497 ORTHO05D005539 2.0e-98 363.6 360 54.4
Aqoxy5G03495 Aquilegia oxysepala HOM05D004497 ORTHO05D005539 7.1e-96 355.1 293 59.0
Sabra12G0069700 Salix brachista HOM05D004497 ORTHO05D005539 2.5e-93 346.7 297 58.9
Os07g0506700 Oryza sativa ssp. japonica HOM05D004497 ORTHO05D005539 5.8e-90 335.5 297 57.2
Mapoly0079s0016 Marchantia polymorpha HOM05D004497 ORTHO05D005539 2.5e-88 330.1 367 46.0
Pp3c13_24500 Physcomitrium patens HOM05D004497 ORTHO05D005539 6.7e-86 322.0 437 42.8
AUR62025094 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.5e-85 320.9 304 53.3
SMO165G0173 Selaginella moellendorffii HOM05D004497 ORTHO05D005539 8.2e-84 315.1 366 46.7
Zm00001eb322320 Zea mays HOM05D004497 ORTHO05D005539 9.7e-77 291.6 199 67.8
vmacro19222 Vaccinium macrocarpon HOM05D004497 ORTHO05D005539 7.2e-72 275.4 361 44.6
SalBow8G1815 Salvia bowleyana HOM05D004497 ORTHO05D005539 9.1e-59 231.9 178 68.5
AagrBONN_evm.TU.Sc2ySwM_344.3271 Anthoceros agrestis HOM05D000006 ORTHO05D004030 5.9e-58 229.2 307 42.0
Actinidia19491 Actinidia chinensis HOM05D004497 ORTHO05D005539 1.0e-57 228.4 324 42.3
AUR62029644 Chenopodium quinoa HOM05D004497 ORTHO05D005539 8.0e-55 218.8 228 50.9
Ca_16680_v3 Cicer arietinum L. HOM05D000160 ORTHO05D000496 2.2e-52 210.7 135 72.6
RcHm_v2.0_Chr0c30g0501231 Rosa chinensis HOM05D004497 ORTHO05D005539 8.2e-52 208.8 373 38.9
RcHm_v2.0_Chr3g0452771 Rosa chinensis HOM05D004497 ORTHO05D005539 8.2e-52 208.8 373 38.9
CBR_g31949 Chara braunii HOM05D004497 ORTHO05D005539 6.1e-47 192.6 374 34.5
RcHm_v2.0_Chr5g0041021 Rosa chinensis HOM05D004497 ORTHO05D005539 3.0e-46 190.3 367 36.0
AUR62025088 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.1e-43 181.8 230 43.9
AUR62025079 Chenopodium quinoa HOM05D004497 ORTHO05D005539 2.0e-34 151.0 157 49.0
Cre17.g718650 Chlamydomonas reinhardtii HOM05D004497 ORTHO05D005539 1.7e-25 121.3 391 25.3
MCO03G018 Micromonas commoda HOM05D004497 ORTHO05D005539 1.1e-24 118.6 372 26.6
PRCOL_00003967 Prasinoderma coloniale HOM05D004497 ORTHO05D005539 3.7e-20 103.6 262 29.0
Gohir.D13G181701 Gossypium hirsutum HOM05D004497 ORTHO05D005539 8.3e-20 102.4 92 54.3
Oeu006698.1 Olea europaea HOM05D004497 ORTHO05D005539 5.4e-19 99.8 67 68.7
AUR62025092 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.7e-17 94.7 53 83.0
C04p39580 Brassica napus HOM05D004497 ORTHO05D005539 8.6e-17 92.4 84 58.3
BolC4t25523H Brassica oleracea HOM05D004497 ORTHO05D005539 8.6e-17 92.4 84 58.3
TAR371G1248 Trochodendron aralioides HOM05D004497 ORTHO05D005539 6.2e-15 86.3 122 42.6
Phvul.003G017700 Phaseolus vulgaris HOM05D004497 ORTHO05D005539 4.6e-10 70.1 75 52.0
Peaxi162Scf00078g00420 Petunia axillaris HOM05D004497 ORTHO05D005539 1.7e-09 68.2 77 61.0
Nitab4.5_0000264g0030 Nicotiana tabacum HOM05D004497 ORTHO05D284815 7.3e-08 62.8 62 54.8
COL.COLO4_36170 Corchorus olitorius HOM05D021494 ORTHO05D022415 1.6e-07 61.6 41 70.7
ECA248G2349 Erigeron canadensis HOM05D000041 ORTHO05D000452 5.2e-06 56.6 79 40.5


User provided reference genes

Program Settings