Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g007890.3 Solanum lycopersicum HOM05D000198 ORTHO05D392445 1.0e-19 99.0 47 100.0
Solyc04g056713.1 Solanum lycopersicum HOM05D001352 ORTHO05D392134 1.3e-17 92.0 54 87.0
Nitab4.5_0000113g0090 Nicotiana tabacum HOM05D000198 ORTHO05D000763 2.8e-09 64.3 44 63.6
Nitab4.5_0002579g0020 Nicotiana tabacum HOM05D000198 ORTHO05D000763 2.8e-09 64.3 44 63.6
Peaxi162Scf00393g00118 Petunia axillaris HOM05D000198 ORTHO05D000763 4.8e-09 63.5 44 63.6
Nitab4.5_0001412g0010 Nicotiana tabacum HOM05D000198 ORTHO05D000763 1.4e-08 62.0 45 57.8
Solyc05g005700.4 Solanum lycopersicum HOM05D000198 ORTHO05D000763 1.4e-08 62.0 44 61.4
Sopen05g001700 Solanum pennellii HOM05D000198 ORTHO05D000763 1.4e-08 62.0 44 61.4
PGSC0003DMG401004125 Solanum tuberosum HOM05D000198 ORTHO05D000763 1.4e-08 62.0 44 61.4
Manes.12G030100 Manihot esculenta HOM05D000198 ORTHO05D000763 7.0e-08 59.7 44 59.1
CAN.G615.3 Capsicum annuum HOM05D000198 ORTHO05D000763 9.1e-08 59.3 44 56.8
Glyma.08G288000 Glycine max HOM05D000198 ORTHO05D000763 9.1e-08 59.3 44 56.8
Manes.13G031200 Manihot esculenta HOM05D000198 ORTHO05D000763 9.1e-08 59.3 44 59.1
Nitab4.5_0008517g0010 Nicotiana tabacum HOM05D000198 ORTHO05D011020 9.1e-08 59.3 44 59.1
THA.LOC104822963 Tarenaya hassleriana HOM05D000198 ORTHO05D000763 1.6e-07 58.5 44 56.8
Eucgr.B03349 Eucalyptus grandis HOM05D000198 ORTHO05D000763 2.0e-07 58.2 44 54.5
CiPaw.06G072400 Carya illinoinensis HOM05D000198 ORTHO05D000763 2.7e-07 57.8 44 54.5
Glyma.18G137300 Glycine max HOM05D000198 ORTHO05D000763 2.7e-07 57.8 44 56.8
MBI14_g36187_MAGBIO Magnolia biondii HOM05D000198 ORTHO05D000763 2.7e-07 57.8 44 54.5
QL03p061629 Quercus lobata HOM05D000198 ORTHO05D000763 2.7e-07 57.8 44 54.5
Cc11_g14550 Coffea canephora HOM05D000198 ORTHO05D000763 3.5e-07 57.4 44 56.8
PGR102G2452 Punica granatum HOM05D000198 ORTHO05D000763 3.5e-07 57.4 44 54.5
TWI36G1492 Tripterygium wilfordii HOM05D000198 ORTHO05D000763 3.5e-07 57.4 44 54.5
Actinidia01707 Actinidia chinensis HOM05D000198 ORTHO05D000763 4.5e-07 57.0 44 56.8
Actinidia27783 Actinidia chinensis HOM05D000198 ORTHO05D000763 4.5e-07 57.0 44 56.8
AL1G37560 Arabidopsis lyrata HOM05D000198 ORTHO05D000763 4.5e-07 57.0 44 54.5
BcaB03g11955 Brassica carinata HOM05D000198 ORTHO05D000763 4.5e-07 57.0 44 54.5
BcaC07g39215 Brassica carinata HOM05D000198 ORTHO05D000763 4.5e-07 57.0 44 54.5
C08p22110 Brassica napus HOM05D000198 ORTHO05D000763 4.5e-07 57.0 44 54.5
BolC8t49856H Brassica oleracea HOM05D000198 ORTHO05D000763 4.5e-07 57.0 44 54.5
Thhalv10007303m.g Eutrema salsugineum HOM05D000198 ORTHO05D000763 4.5e-07 57.0 44 54.5
Medtr8g064170 Medicago truncatula HOM05D000198 ORTHO05D000763 4.5e-07 57.0 44 54.5
Ah.03g132600 Amaranthus hybridus HOM05D000198 ORTHO05D000763 5.9e-07 56.6 44 54.5
CANSAT01G1310 Cannabis sativa HOM05D000198 ORTHO05D000763 5.9e-07 56.6 44 54.5
Carub.0001s2331 Capsella rubella HOM05D000198 ORTHO05D000763 5.9e-07 56.6 44 54.5
Migut.E00158 Erythranthe guttata HOM05D000198 ORTHO05D000763 5.9e-07 56.6 44 54.5
Lsat_1_v5_gn_4_74900 Lactuca sativa HOM05D000198 ORTHO05D000763 5.9e-07 56.6 44 56.8
THA.LOC104822138 Tarenaya hassleriana HOM05D000198 ORTHO05D000763 5.9e-07 56.6 44 54.5
Zm00001eb380260 Zea mays HOM05D000198 ORTHO05D000763 5.9e-07 56.6 44 52.3
CiPaw.05G149800 Carya illinoinensis HOM05D000198 ORTHO05D000763 7.7e-07 56.2 44 50.0
Phvul.003G052500 Phaseolus vulgaris HOM05D000198 ORTHO05D000763 7.7e-07 56.2 44 52.3
Psat4g126400 Pisum sativum HOM05D000198 ORTHO05D000763 7.7e-07 56.2 44 54.5
Lalb_Chr09g0335031 Lupinus albus HOM05D000198 ORTHO05D000763 1.0e-06 55.8 44 50.0
Sp1g21180 Schrenkiella parvula HOM05D000198 ORTHO05D000763 1.0e-06 55.8 44 52.3
Aa31LG7G7680 Aethionema arabicum HOM05D000198 ORTHO05D000763 1.3e-06 55.5 44 52.3
AT1G23800 Arabidopsis thaliana HOM05D000198 ORTHO05D000763 1.3e-06 55.5 44 52.3
BcaC05g26290 Brassica carinata HOM05D000198 ORTHO05D000763 1.3e-06 55.5 44 54.5
A09p41020 Brassica napus HOM05D000198 ORTHO05D000763 1.3e-06 55.5 44 54.5
C05p22980 Brassica napus HOM05D000198 ORTHO05D000763 1.3e-06 55.5 44 54.5
BolC5t30997H Brassica oleracea HOM05D000198 ORTHO05D000763 1.3e-06 55.5 44 54.5
BraA09t39595Z Brassica rapa HOM05D000198 ORTHO05D000763 1.3e-06 55.5 44 54.5
Cpa.g.sc69.12 Carica papaya HOM05D000198 ORTHO05D000763 1.3e-06 55.5 44 50.0
Cfa009132 Carpinus fangiana HOM05D000198 ORTHO05D000763 1.3e-06 55.5 44 47.7
Hma1.2p1_0802F.1_g220550 Hydrangea macrophylla HOM05D000198 ORTHO05D000763 1.3e-06 55.5 44 52.3
Hma1.2p1_0967F.1_g242275 Hydrangea macrophylla HOM05D000198 ORTHO05D000763 1.3e-06 55.5 44 52.3
PSO063G2090 Papaver somniferum HOM05D000198 ORTHO05D000763 1.3e-06 55.5 44 52.3
QL03p061662 Quercus lobata HOM05D000198 ORTHO05D000763 1.3e-06 55.5 44 47.7
GSVIVG01000602001 Vitis vinifera HOM05D000198 ORTHO05D000763 1.3e-06 55.5 44 52.3
A08p28010 Brassica napus HOM05D000198 ORTHO05D000763 1.7e-06 55.1 44 52.3
BraA08t34731Z Brassica rapa HOM05D000198 ORTHO05D000763 1.7e-06 55.1 44 52.3
CDE02G0636 Ceratophyllum demersum HOM05D000198 ORTHO05D000763 1.7e-06 55.1 40 57.5
MD13G1090800 Malus domestica HOM05D000198 ORTHO05D000763 1.7e-06 55.1 44 52.3
Psat4g125120 Pisum sativum HOM05D000198 ORTHO05D000763 1.7e-06 55.1 44 52.3
CDE05G0565 Ceratophyllum demersum HOM05D000198 ORTHO05D000763 2.2e-06 54.7 44 52.3
AUR62005363 Chenopodium quinoa HOM05D000198 ORTHO05D000763 2.2e-06 54.7 44 52.3
AUR62014018 Chenopodium quinoa HOM05D000198 ORTHO05D000763 2.2e-06 54.7 44 52.3
Lj4g0002511 Lotus japonicus HOM05D000198 ORTHO05D000763 2.2e-06 54.7 44 54.5
Oeu028912.1 Olea europaea HOM05D000198 ORTHO05D000763 2.2e-06 54.7 44 52.3
Os06g0270900 Oryza sativa ssp. japonica HOM05D000198 ORTHO05D000763 2.2e-06 54.7 44 52.3
TPR.G32098 Trifolium pratense HOM05D000198 ORTHO05D000763 2.2e-06 54.7 44 50.0
VMungo0251G2184 Vigna mungo HOM05D000198 ORTHO05D000763 2.2e-06 54.7 44 50.0
Cpa.g.sc124.36 Carica papaya HOM05D000198 ORTHO05D000763 2.9e-06 54.3 44 52.3
CDE05G3066 Ceratophyllum demersum HOM05D000198 ORTHO05D000763 2.9e-06 54.3 44 50.0
Prupe.1G255200 Prunus persica HOM05D000198 ORTHO05D000763 2.9e-06 54.3 44 52.3
SalBow2G2247 Salvia bowleyana HOM05D000198 ORTHO05D000763 2.9e-06 54.3 44 52.3
Atru.chr11.2004 Acer truncatum HOM05D000198 ORTHO05D000763 3.8e-06 53.9 40 55.0
MSTRG.602 Avicennia marina HOM05D000198 ORTHO05D000763 3.8e-06 53.9 44 50.0
Ca_22738_v3 Cicer arietinum L. HOM05D000198 ORTHO05D000763 3.8e-06 53.9 44 50.0
FAN17G2727 Fragaria x ananassa HOM05D000198 ORTHO05D000763 3.8e-06 53.9 44 47.7
Sc04g0004930 Simmondsia chinensis HOM05D000198 ORTHO05D000763 3.8e-06 53.9 44 47.7
Dinv15313 Davidia involucrata HOM05D000198 ORTHO05D000763 5.0e-06 53.5 44 54.5
arahy.Tifrunner.gnm1.ann1.3CBS5R Arachis hypogaea HOM05D000198 ORTHO05D000763 6.5e-06 53.1 44 47.7
arahy.Tifrunner.gnm1.ann1.ZMIE54 Arachis hypogaea HOM05D000198 ORTHO05D000763 6.5e-06 53.1 44 47.7
MSTRG.7890 Avicennia marina HOM05D000198 ORTHO05D000763 6.5e-06 53.1 44 50.0
EL10Ac6g13661 Beta vulgaris HOM05D000198 ORTHO05D000763 6.5e-06 53.1 44 50.0
Gohir.D07G226200 Gossypium hirsutum HOM05D000198 ORTHO05D000763 6.5e-06 53.1 44 47.7
Lalb_Chr16g0382311 Lupinus albus HOM05D000198 ORTHO05D000763 6.5e-06 53.1 44 47.7
Nn3g16913 Nelumbo nucifera HOM05D000198 ORTHO05D000763 6.5e-06 53.1 40 52.5
RcHm_v2.0_Chr4g0444001 Rosa chinensis HOM05D000198 ORTHO05D000763 6.5e-06 53.1 44 47.7
Thecc.04G007500 Theobroma cacao HOM05D000198 ORTHO05D000763 6.5e-06 53.1 44 47.7
TAR622G0988 Trochodendron aralioides HOM05D000198 ORTHO05D000763 6.5e-06 53.1 44 52.3
TAR622G1296 Trochodendron aralioides HOM05D000198 ORTHO05D000763 6.5e-06 53.1 44 52.3
CSS0003337 Camellia sinensis var. sinensis HOM05D000198 ORTHO05D000763 8.5e-06 52.8 44 50.0
CARHR024200 Cardamine hirsuta HOM05D000198 ORTHO05D000763 8.5e-06 52.8 44 50.0
COL.COLO4_04781 Corchorus olitorius HOM05D000198 ORTHO05D000763 8.5e-06 52.8 44 47.7
FAN07G1949 Fragaria x ananassa HOM05D000198 ORTHO05D000763 8.5e-06 52.8 44 45.5
FAN12G2185 Fragaria x ananassa HOM05D000198 ORTHO05D000763 8.5e-06 52.8 44 45.5
FAN12G3033 Fragaria x ananassa HOM05D000198 ORTHO05D000763 8.5e-06 52.8 44 45.5
FAN12G3653 Fragaria x ananassa HOM05D000198 ORTHO05D000763 8.5e-06 52.8 44 47.7
FAN22G0947 Fragaria x ananassa HOM05D000198 ORTHO05D000763 8.5e-06 52.8 44 45.5
MD13G1090600 Malus domestica HOM05D000198 ORTHO05D000763 8.5e-06 52.8 44 47.7


User provided reference genes

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