Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g007805.1 Solanum lycopersicum HOM05D004069 ORTHO05D004699 9.8e-45 183.0 84 100.0
HanXRQChr13g0410171 Helianthus annuus HOM05D004069 ORTHO05D004699 4.6e-18 94.4 54 77.8
MD10G1048000 Malus domestica HOM05D004069 ORTHO05D004699 4.6e-18 94.4 106 48.1
RcHm_v2.0_Chr4g0420511 Rosa chinensis HOM05D004069 ORTHO05D004699 4.6e-18 94.4 106 48.1
Lsat_1_v5_gn_5_49720 Lactuca sativa HOM05D004069 ORTHO05D004699 6.0e-18 94.0 64 67.2
Prupe.1G144300 Prunus persica HOM05D004069 ORTHO05D004699 6.0e-18 94.0 106 48.1
PGSC0003DMG400012496 Solanum tuberosum HOM05D004069 ORTHO05D004699 6.0e-18 94.0 56 80.4
MD13G1175600 Malus domestica HOM05D004069 ORTHO05D004699 7.8e-18 93.6 106 48.1
FAN07G2596 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.3e-17 92.8 106 47.2
FAN22G1255 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.3e-17 92.8 106 47.2
ECA240G0933 Erigeron canadensis HOM05D004069 ORTHO05D004699 3.0e-17 91.7 54 75.9
FvH4_4g16930 Fragaria vesca HOM05D004069 ORTHO05D004699 3.0e-17 91.7 106 46.2
FAN12G1790 Fragaria x ananassa HOM05D004069 ORTHO05D004699 3.0e-17 91.7 106 46.2
FAN12G4073 Fragaria x ananassa HOM05D004069 ORTHO05D004699 3.0e-17 91.7 106 46.2
MD05G1041600 Malus domestica HOM05D004069 ORTHO05D004699 3.0e-17 91.7 106 47.2
Peaxi162Scf00620g00918 Petunia axillaris HOM05D004069 ORTHO05D004699 3.0e-17 91.7 54 74.1
Sc11g0003950 Simmondsia chinensis HOM05D004069 ORTHO05D004699 3.0e-17 91.7 54 75.9
GSVIVG01017834001 Vitis vinifera HOM05D004069 ORTHO05D004699 3.0e-17 91.7 54 75.9
Cc03_g02560 Coffea canephora HOM05D004069 ORTHO05D004699 3.9e-17 91.3 54 74.1
Dinv38340 Davidia involucrata HOM05D004069 ORTHO05D004699 3.9e-17 91.3 54 74.1
Nitab4.5_0001714g0140 Nicotiana tabacum HOM05D004069 ORTHO05D004699 3.9e-17 91.3 54 74.1
Nitab4.5_0009882g0010 Nicotiana tabacum HOM05D004069 ORTHO05D004699 3.9e-17 91.3 54 74.1
HanXRQChr03g0080011 Helianthus annuus HOM05D004069 ORTHO05D004699 5.1e-17 90.9 54 72.2
Nn4g26079 Nelumbo nucifera HOM05D004069 ORTHO05D004699 5.1e-17 90.9 54 72.2
PGSC0003DMG400022739 Solanum tuberosum HOM05D004069 ORTHO05D004699 5.1e-17 90.9 54 74.1
Aqoxy2G03156 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 6.6e-17 90.5 54 72.2
Hma1.2p1_0078F.1_g040910 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 8.6e-17 90.1 53 75.5
Hma1.2p1_1671F.1_g296710 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 8.6e-17 90.1 53 75.5
Sabra08G0163600 Salix brachista HOM05D004069 ORTHO05D004699 8.6e-17 90.1 105 49.5
CAN.G981.42 Capsicum annuum HOM05D004069 ORTHO05D004699 1.1e-16 89.7 54 72.2
Hma1.2p1_0643F.1_g194630 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 1.1e-16 89.7 64 62.5
Solyc08g080240.3 Solanum lycopersicum HOM05D004069 ORTHO05D004699 1.1e-16 89.7 54 72.2
Sopen08g028590 Solanum pennellii HOM05D004069 ORTHO05D004699 1.1e-16 89.7 54 72.2
Manes.15G019000 Manihot esculenta HOM05D004069 ORTHO05D004699 1.9e-16 89.0 106 46.2
TWI73G0788 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 1.9e-16 89.0 106 46.2
TAR633G1540 Trochodendron aralioides HOM05D004069 ORTHO05D004699 1.9e-16 89.0 54 72.2
Potri.008G196600 Populus trichocarpa HOM05D004069 ORTHO05D004699 2.5e-16 88.6 105 48.6
vmacro08226 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 2.5e-16 88.6 54 70.4
CANSAT54G0205 Cannabis sativa HOM05D004069 ORTHO05D004699 3.3e-16 88.2 106 45.3
HanXRQChr03g0079731 Helianthus annuus HOM05D004069 ORTHO05D004699 3.3e-16 88.2 54 72.2
TWI09G1514 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 3.3e-16 88.2 106 45.3
Actinidia23443 Actinidia chinensis HOM05D004069 ORTHO05D004699 4.3e-16 87.8 54 72.2
Actinidia40204 Actinidia chinensis HOM05D004069 ORTHO05D004699 4.3e-16 87.8 54 72.2
Cpa.g.sc16.88 Carica papaya HOM05D004069 ORTHO05D004699 4.3e-16 87.8 54 72.2
Cfa015517 Carpinus fangiana HOM05D004069 ORTHO05D004699 4.3e-16 87.8 106 45.3
Lsat_1_v5_gn_5_51221 Lactuca sativa HOM05D004069 ORTHO05D004699 4.3e-16 87.8 54 70.4
Manes.03G189600 Manihot esculenta HOM05D004069 ORTHO05D004699 4.3e-16 87.8 106 46.2
CSS0012120 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 5.6e-16 87.4 54 70.4
CiPaw.01G155300 Carya illinoinensis HOM05D004069 ORTHO05D004699 5.6e-16 87.4 54 70.4
CDE09G1375 Ceratophyllum demersum HOM05D004069 ORTHO05D004699 5.6e-16 87.4 54 72.2
DCAR_002434 Daucus carota HOM05D004069 ORTHO05D004699 5.6e-16 87.4 54 70.4
Eucgr.H03663 Eucalyptus grandis HOM05D004069 ORTHO05D004699 5.6e-16 87.4 54 72.2
PSO210G4490 Papaver somniferum HOM05D004069 ORTHO05D004699 5.6e-16 87.4 54 74.1
VMungo0331G0995 Vigna mungo HOM05D004069 ORTHO05D004699 5.6e-16 87.4 105 48.6
CiPaw.02G087900 Carya illinoinensis HOM05D004069 ORTHO05D004699 7.3e-16 87.0 106 46.2
Sc19g0004820 Simmondsia chinensis HOM05D004069 ORTHO05D004699 7.3e-16 87.0 55 69.1
Dinv44442 Davidia involucrata HOM05D004069 ORTHO05D004699 9.5e-16 86.7 54 70.4
FAN17G0096 Fragaria x ananassa HOM05D004069 ORTHO05D004699 9.5e-16 86.7 54 68.5
Nn3g21235 Nelumbo nucifera HOM05D004069 ORTHO05D004699 9.5e-16 86.7 106 46.2
Sed0000717 Sechium edule HOM05D004069 ORTHO05D004699 9.5e-16 86.7 54 68.5
Sed0022789 Sechium edule HOM05D004069 ORTHO05D004699 1.2e-15 86.3 54 68.5
Aqoxy5G00598 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 1.6e-15 85.9 54 70.4
Eucgr.B01240 Eucalyptus grandis HOM05D004069 ORTHO05D004699 1.6e-15 85.9 54 68.5
Eucgr.B01248 Eucalyptus grandis HOM05D004069 ORTHO05D004699 1.6e-15 85.9 54 68.5
Lj3g0025312 Lotus japonicus HOM05D004069 ORTHO05D004699 1.6e-15 85.9 105 48.6
MBI18_g15803_MAGBIO Magnolia biondii HOM05D004069 ORTHO05D004699 1.6e-15 85.9 45 75.6
MD16G1177400 Malus domestica HOM05D004069 ORTHO05D004699 1.6e-15 85.9 106 44.3
PSO832G3814 Papaver somniferum HOM05D004069 ORTHO05D004699 1.6e-15 85.9 54 72.2
Sabra10G0013600 Salix brachista HOM05D004069 ORTHO05D004699 1.6e-15 85.9 104 47.1
VMungo0331G0279 Vigna mungo HOM05D004069 ORTHO05D004699 1.6e-15 85.9 105 47.6
Actinidia32378 Actinidia chinensis HOM05D004069 ORTHO05D004699 2.1e-15 85.5 54 68.5
AUR62022250 Chenopodium quinoa HOM05D004069 ORTHO05D004699 2.1e-15 85.5 54 70.4
Medtr8g035900 Medicago truncatula HOM05D004069 ORTHO05D004699 2.1e-15 85.5 105 47.6
Sp3g05220 Schrenkiella parvula HOM05D004069 ORTHO05D004699 2.1e-15 85.5 104 48.1
vmacro15276 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 2.1e-15 85.5 54 68.5
Zm00001eb013640 Zea mays HOM05D004069 ORTHO05D004699 2.1e-15 85.5 58 67.2
arahy.Tifrunner.gnm1.ann1.J8E67M Arachis hypogaea HOM05D004069 ORTHO05D004699 2.8e-15 85.1 105 47.6
Glyma.01G145000 Glycine max HOM05D004069 ORTHO05D004699 2.8e-15 85.1 105 47.6
Lalb_Chr07g0189611 Lupinus albus HOM05D004069 ORTHO05D004699 2.8e-15 85.1 105 45.7
Rhsim04G0214300 Rhododendron simsii HOM05D004069 ORTHO05D004699 2.8e-15 85.1 42 83.3
Hund07638 Selenicereus undatus HOM05D004069 ORTHO05D004699 2.8e-15 85.1 54 66.7
THA.LOC104818836 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 2.8e-15 85.1 54 68.5
TAR362G0867 Trochodendron aralioides HOM05D004069 ORTHO05D004699 2.8e-15 85.1 106 45.3
BraA03t10237Z Brassica rapa HOM05D004069 ORTHO05D004699 3.6e-15 84.7 106 46.2
CsaV3_1G037430 Cucumis sativus L. HOM05D004069 ORTHO05D004699 3.6e-15 84.7 54 66.7
Glyma.03G021800 Glycine max HOM05D004069 ORTHO05D004699 3.6e-15 84.7 105 47.6
Potri.010G026000 Populus trichocarpa HOM05D004069 ORTHO05D004699 3.6e-15 84.7 104 47.1
Atru.chr4.2722 Acer truncatum HOM05D004069 ORTHO05D004699 4.7e-15 84.3 106 43.4
Thhalv10021810m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 4.7e-15 84.3 104 48.1
Os03g0295500 Oryza sativa ssp. japonica HOM05D004069 ORTHO05D004699 4.7e-15 84.3 54 70.4
PGR004G0388 Punica granatum HOM05D004069 ORTHO05D004699 4.7e-15 84.3 54 70.4
QL06p006731 Quercus lobata HOM05D004069 ORTHO05D004699 4.7e-15 84.3 54 66.7
arahy.Tifrunner.gnm1.ann1.EYX6XU Arachis hypogaea HOM05D004069 ORTHO05D004699 6.2e-15 84.0 105 46.7
Carub.0003s0574 Capsella rubella HOM05D004069 ORTHO05D004699 6.2e-15 84.0 54 68.5
AL3G17240 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 8.1e-15 83.6 54 68.5
EL10Ac9g21174 Beta vulgaris HOM05D004069 ORTHO05D004699 8.1e-15 83.6 54 66.7
BcaC04g18646 Brassica carinata HOM05D004069 ORTHO05D004699 8.1e-15 83.6 106 45.3
BolC9t58640H Brassica oleracea HOM05D004069 ORTHO05D004699 8.1e-15 83.6 106 45.3
Lalb_Chr13g0291661 Lupinus albus HOM05D004069 ORTHO05D004699 8.1e-15 83.6 105 44.8
C09p57690 Brassica napus HOM05D004069 ORTHO05D004699 1.1e-14 83.2 106 45.3
Ciclev10006197m.g Citrus clementina HOM05D004069 ORTHO05D004699 1.1e-14 83.2 54 66.7
Ah.01g005950 Amaranthus hybridus HOM05D004069 ORTHO05D004699 1.4e-14 82.8 54 66.7
MSTRG.9205 Avicennia marina HOM05D004069 ORTHO05D004699 1.4e-14 82.8 54 66.7
CARHR080830 Cardamine hirsuta HOM05D004069 ORTHO05D004699 1.4e-14 82.8 54 66.7
Migut.F02022 Erythranthe guttata HOM05D004069 ORTHO05D004699 1.4e-14 82.8 54 66.7
Psat4g149640 Pisum sativum HOM05D004069 ORTHO05D004699 1.4e-14 82.8 103 47.6
PGR031G1560 Punica granatum HOM05D004069 ORTHO05D004699 1.4e-14 82.8 54 66.7
THA.LOC104827125 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 1.4e-14 82.8 106 45.3
Actinidia00062 Actinidia chinensis HOM05D004069 ORTHO05D004699 2.4e-14 82.0 106 43.4
AT3G06310 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 2.4e-14 82.0 54 66.7
Oeu007709.1 Olea europaea HOM05D004069 ORTHO05D004699 2.4e-14 82.0 76 51.3
TPR.G36608 Trifolium pratense HOM05D004069 ORTHO05D004699 2.4e-14 82.0 103 46.6
Hund24899 Selenicereus undatus HOM05D004069 ORTHO05D004699 3.1e-14 81.6 54 66.7
AL6G30150 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 4.0e-14 81.3 54 66.7
AT5G18800 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 4.0e-14 81.3 54 66.7
BcaB01g04889 Brassica carinata HOM05D004069 ORTHO05D004699 4.0e-14 81.3 54 66.7
BcaB01g05275 Brassica carinata HOM05D004069 ORTHO05D004699 4.0e-14 81.3 54 66.7
BcaC03g13618 Brassica carinata HOM05D004069 ORTHO05D004699 4.0e-14 81.3 54 66.7
A03p09140 Brassica napus HOM05D004069 ORTHO05D004699 4.0e-14 81.3 54 66.7
A10p20810 Brassica napus HOM05D004069 ORTHO05D004699 4.0e-14 81.3 54 66.7
C03p10670 Brassica napus HOM05D004069 ORTHO05D004699 4.0e-14 81.3 54 66.7
BolC2t06916H Brassica oleracea HOM05D004069 ORTHO05D004699 4.0e-14 81.3 54 66.7
BolC3t13543H Brassica oleracea HOM05D004069 ORTHO05D004699 4.0e-14 81.3 54 66.7
BraA02t05469Z Brassica rapa HOM05D004069 ORTHO05D004699 4.0e-14 81.3 54 66.7
BraA10t44146Z Brassica rapa HOM05D004069 ORTHO05D004699 4.0e-14 81.3 54 66.7
Carub.0006s1710 Capsella rubella HOM05D004069 ORTHO05D004699 4.0e-14 81.3 54 66.7
CARHR194200 Cardamine hirsuta HOM05D004069 ORTHO05D004699 4.0e-14 81.3 54 66.7
Thhalv10015085m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 4.0e-14 81.3 54 66.7
PGR031G3162 Punica granatum HOM05D004069 ORTHO05D004699 4.0e-14 81.3 54 66.7
Sp6g25590 Schrenkiella parvula HOM05D004069 ORTHO05D004699 4.0e-14 81.3 54 66.7
Zm00001eb396890 Zea mays HOM05D004069 ORTHO05D004699 4.0e-14 81.3 54 66.7
Phvul.010G048500 Phaseolus vulgaris HOM05D004069 ORTHO05D004699 8.9e-14 80.1 105 44.8
BcaB08g36643 Brassica carinata HOM05D004069 ORTHO05D004699 1.2e-13 79.7 54 64.8
ClCG03G006350 Citrullus lanatus HOM05D004069 ORTHO05D004699 1.5e-13 79.3 41 75.6
SEGI_25177 Sequoiadendron giganteum HOM05D004069 ORTHO05D004699 2.0e-13 79.0 54 63.0
ATR0208G034 Amborella trichopoda HOM05D004069 ORTHO05D004699 2.6e-13 78.6 54 64.8
HPP92_001127 Vanilla planifolia HOM05D004069 ORTHO05D004699 2.6e-13 78.6 54 64.8
unitig_46.g18583 Utricularia gibba HOM05D004069 ORTHO05D004699 3.4e-13 78.2 54 64.8
Aa31LG11G10890 Aethionema arabicum HOM05D004069 ORTHO05D004699 5.8e-13 77.4 54 63.0
Rhsim02G0014600 Rhododendron simsii HOM05D004069 ORTHO05D004699 5.8e-13 77.4 54 61.1
unitig_37.g12295 Utricularia gibba HOM05D004069 ORTHO05D004699 9.9e-13 76.6 54 63.0
Ah.01g017180 Amaranthus hybridus HOM05D004069 ORTHO05D004699 1.3e-12 76.3 41 73.2
A02p05100 Brassica napus HOM05D000415 ORTHO05D002707 2.2e-12 75.5 52 65.4
C02p10150 Brassica napus HOM05D000415 ORTHO05D002707 2.2e-12 75.5 52 65.4
Duzib212G0467 Durio zibethinus HOM05D004069 ORTHO05D004699 1.1e-11 73.2 106 38.7
Gohir.D10G164800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 1.1e-11 73.2 54 59.3
Gorai.011G184000 Gossypium raimondii HOM05D004069 ORTHO05D004699 1.1e-11 73.2 54 59.3
Thecc.04G274500 Theobroma cacao HOM05D004069 ORTHO05D004699 1.1e-11 73.2 106 38.7
Duzib151G0641 Durio zibethinus HOM05D004069 ORTHO05D004699 5.4e-11 70.9 106 37.7
Gohir.A09G232800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 7.1e-11 70.5 54 53.7
Gohir.D09G233900 Gossypium hirsutum HOM05D004069 ORTHO05D004699 7.1e-11 70.5 54 53.7
Gohir.A10G103600 Gossypium hirsutum HOM05D004069 ORTHO05D004699 9.2e-11 70.1 54 57.4
Gorai.006G256800 Gossypium raimondii HOM05D004069 ORTHO05D004699 1.6e-10 69.3 54 51.9
Duzib052G0156 Durio zibethinus HOM05D004069 ORTHO05D004699 7.8e-10 67.0 106 35.8
Pp3c4_6220 Physcomitrium patens HOM05D004069 ORTHO05D004699 7.8e-10 67.0 54 53.7
CBR_g31386 Chara braunii HOM05D004069 ORTHO05D004699 1.7e-09 65.9 54 55.6
Pp3c10_17050 Physcomitrium patens HOM05D004069 ORTHO05D004699 1.7e-09 65.9 54 53.7
Pp3c3_33480 Physcomitrium patens HOM05D004069 ORTHO05D004699 2.3e-09 65.5 54 51.9
Mapoly0119s0025 Marchantia polymorpha HOM05D004069 ORTHO05D004699 5.6e-08 60.8 54 46.3
SMO146G0136 Selaginella moellendorffii HOM05D004069 ORTHO05D004699 5.6e-08 60.8 54 48.1


User provided reference genes

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