Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g007580.4 Solanum lycopersicum HOM05D005851 ORTHO05D007137 9.3e-110 400.2 201 100.0
PGSC0003DMG400012515 Solanum tuberosum HOM05D005851 ORTHO05D007137 4.6e-101 371.3 194 95.4
Nitab4.5_0001816g0070 Nicotiana tabacum HOM05D005851 ORTHO05D007137 4.8e-82 308.1 199 80.9
Nitab4.5_0001265g0130 Nicotiana tabacum HOM05D005851 ORTHO05D007137 1.8e-81 306.2 199 80.4
CAN.G1394.24 Capsicum annuum HOM05D005851 ORTHO05D007137 4.8e-74 281.6 231 65.8
Peaxi162Scf00620g00019 Petunia axillaris HOM05D005851 ORTHO05D007137 5.7e-67 258.1 200 68.5
Nitab4.5_0006122g0020 Nicotiana tabacum HOM05D005851 ORTHO05D007137 4.1e-65 251.9 198 68.2
Sopen08g003540 Solanum pennellii HOM05D005851 ORTHO05D007137 4.1e-65 251.9 127 98.4
Nitab4.5_0000439g0090 Nicotiana tabacum HOM05D005851 ORTHO05D007137 5.9e-64 248.1 200 67.5
Sopen08g028040 Solanum pennellii HOM05D005851 ORTHO05D007137 3.3e-62 242.3 193 66.8
Solyc08g079680.3 Solanum lycopersicum HOM05D005851 ORTHO05D007137 8.0e-61 237.7 193 65.8
PGSC0003DMG400003949 Solanum tuberosum HOM05D005851 ORTHO05D007137 1.0e-60 237.3 193 65.3
FAN13G0774 Fragaria x ananassa HOM05D005851 ORTHO05D007137 1.9e-54 216.5 188 60.1
Hma1.2p1_0367F.1_g137205 Hydrangea macrophylla HOM05D005851 ORTHO05D007137 1.9e-54 216.5 203 61.1
FvH4_5g00940 Fragaria vesca HOM05D005851 ORTHO05D007137 3.3e-54 215.7 186 59.7
Actinidia14484 Actinidia chinensis HOM05D005851 ORTHO05D007137 7.3e-54 214.5 200 61.5
FAN04G1422 Fragaria x ananassa HOM05D005851 ORTHO05D007137 1.2e-53 213.8 188 59.0
Gohir.A12G222500 Gossypium hirsutum HOM05D005851 ORTHO05D007137 2.1e-53 213.0 186 61.8
Gorai.008G241100 Gossypium raimondii HOM05D005851 ORTHO05D007137 8.0e-53 211.1 186 61.3
Gohir.D12G225000 Gossypium hirsutum HOM05D005851 ORTHO05D007137 1.4e-52 210.3 186 61.3
TAR629G1703 Trochodendron aralioides HOM05D005851 ORTHO05D007137 1.4e-52 210.3 159 66.0
MD06G1068000 Malus domestica HOM05D005851 ORTHO05D007137 1.8e-52 209.9 188 60.6
QL12p015621 Quercus lobata HOM05D005851 ORTHO05D007137 2.3e-52 209.5 180 62.8
CSS0019536 Camellia sinensis var. sinensis HOM05D005851 ORTHO05D007137 3.1e-52 209.1 158 71.5
HanXRQChr09g0246661 Helianthus annuus HOM05D005851 ORTHO05D007137 3.1e-52 209.1 184 59.8
RcHm_v2.0_Chr7g0200451 Rosa chinensis HOM05D005851 ORTHO05D007137 1.5e-51 206.8 190 57.9
Oeu064711.1 Olea europaea HOM05D005851 ORTHO05D007137 2.0e-51 206.5 197 58.4
Atru.chr9.1473 Acer truncatum HOM05D005851 ORTHO05D007137 1.3e-50 203.8 198 57.1
CsaV3_3G003320 Cucumis sativus L. HOM05D005851 ORTHO05D007137 1.3e-50 203.8 195 57.9
Duzib205G1229 Durio zibethinus HOM05D005851 ORTHO05D007137 1.3e-50 203.8 141 73.0
CAN.G630.46 Capsicum annuum HOM05D005851 ORTHO05D007137 2.2e-50 203.0 122 82.8
vmacro00216 Vaccinium macrocarpon HOM05D005851 ORTHO05D007137 3.7e-50 202.2 191 59.2
Sc01g0009080 Simmondsia chinensis HOM05D005851 ORTHO05D007137 4.9e-50 201.8 149 68.5
TWI60G0484 Tripterygium wilfordii HOM05D005851 ORTHO05D007137 1.1e-49 200.7 158 67.1
PGR042G2385 Punica granatum HOM05D005851 ORTHO05D007137 1.4e-49 200.3 157 65.6
Cpa.g.sc29.62 Carica papaya HOM05D005851 ORTHO05D007137 2.4e-49 199.5 147 68.7
GSVIVG01019923001 Vitis vinifera HOM05D005851 ORTHO05D007137 2.4e-49 199.5 142 70.4
ECA233G5981 Erigeron canadensis HOM05D005851 ORTHO05D007137 4.1e-49 198.7 141 70.9
Rhsim05G0172500 Rhododendron simsii HOM05D005851 ORTHO05D007137 4.1e-49 198.7 143 70.6
Cc08_g13500 Coffea canephora HOM05D005851 ORTHO05D007137 2.7e-48 196.1 203 58.1
Potri.001G114800 Populus trichocarpa HOM05D005851 ORTHO05D007137 2.7e-48 196.1 162 64.2
SGA_v2.0_scaffold144G35989 Striga asiatica HOM05D005851 ORTHO05D007137 3.5e-48 195.7 141 68.1
Sabra01G0087800 Salix brachista HOM05D005851 ORTHO05D007137 4.6e-48 195.3 198 56.1
MELO3C013999.2 Cucumis melo HOM05D005851 ORTHO05D007137 1.3e-47 193.7 203 54.7
MBI12_g34479_MAGBIO Magnolia biondii HOM05D005851 ORTHO05D007137 3.0e-47 192.6 209 53.1
SalBow1G3546 Salvia bowleyana HOM05D005851 ORTHO05D007137 1.1e-46 190.7 149 65.1
TPR.G19565 Trifolium pratense HOM05D005851 ORTHO05D007137 3.3e-46 189.1 109 78.9
FAN08G3582 Fragaria x ananassa HOM05D005851 ORTHO05D007137 4.3e-46 188.7 188 54.3
BcaNung01022 Brassica carinata HOM05D005851 ORTHO05D007137 9.5e-46 187.6 137 65.7
Medtr5g011460 Medicago truncatula HOM05D005851 ORTHO05D007137 9.5e-46 187.6 109 78.0
Psat2g180400 Pisum sativum HOM05D005851 ORTHO05D007137 1.2e-45 187.2 171 59.6
Lj2g0003035 Lotus japonicus HOM05D005851 ORTHO05D007137 2.1e-45 186.4 109 77.1
MSTRG.1924 Avicennia marina HOM05D005851 ORTHO05D007137 2.8e-45 186.0 191 53.9
BolC1t01669H Brassica oleracea HOM05D005851 ORTHO05D007137 2.8e-45 186.0 158 58.9
arahy.Tifrunner.gnm1.ann1.KEJN3W Arachis hypogaea HOM05D005851 ORTHO05D007137 8.0e-45 184.5 113 76.1
BcaC09g51070 Brassica carinata HOM05D005851 ORTHO05D007137 8.0e-45 184.5 158 58.2
BcaC09g51071 Brassica carinata HOM05D005851 ORTHO05D007137 8.0e-45 184.5 158 58.2
A01p14080 Brassica napus HOM05D005851 ORTHO05D007137 8.0e-45 184.5 134 66.4
C01p17300 Brassica napus HOM05D005851 ORTHO05D007137 8.0e-45 184.5 158 58.2
BraA01t01356Z Brassica rapa HOM05D005851 ORTHO05D007137 8.0e-45 184.5 134 66.4
Ciclev10024430m.g Citrus clementina HOM05D005851 ORTHO05D007137 8.0e-45 184.5 181 56.9
Glyma.01G213300 Glycine max HOM05D005851 ORTHO05D007137 1.1e-44 184.1 166 59.0
arahy.Tifrunner.gnm1.ann1.BUTP6K Arachis hypogaea HOM05D005851 ORTHO05D007137 1.8e-44 183.3 143 64.3
CiPaw.11G145200 Carya illinoinensis HOM05D005851 ORTHO05D007137 1.8e-44 183.3 201 49.8
AUR62010535 Chenopodium quinoa HOM05D005851 ORTHO05D007137 1.8e-44 183.3 157 64.3
Thhalv10026321m.g Eutrema salsugineum HOM05D005851 ORTHO05D007137 3.1e-44 182.6 149 61.1
AL7G30690 Arabidopsis lyrata HOM05D005851 ORTHO05D007137 5.2e-44 181.8 126 70.6
Os04g0379400 Oryza sativa ssp. japonica HOM05D005851 ORTHO05D007137 8.9e-44 181.0 139 64.7
THA.LOC104814025 Tarenaya hassleriana HOM05D005851 ORTHO05D007137 8.9e-44 181.0 116 73.3
EL10Ac5g12653 Beta vulgaris HOM05D005851 ORTHO05D007137 1.2e-43 180.6 103 80.6
AUR62017360 Chenopodium quinoa HOM05D005851 ORTHO05D007137 1.2e-43 180.6 148 64.9
CARHR229860 Cardamine hirsuta HOM05D005851 ORTHO05D007137 2.6e-43 179.5 126 70.6
Carub.0007s1844 Capsella rubella HOM05D005851 ORTHO05D007137 3.4e-43 179.1 123 69.9
Aa31LG6G4910 Aethionema arabicum HOM05D000943 ORTHO05D002475 4.4e-43 178.7 187 53.5
AT4G22830 Arabidopsis thaliana HOM05D005851 ORTHO05D007137 5.8e-43 178.3 130 67.7
ATR0810G218 Amborella trichopoda HOM05D005851 ORTHO05D007137 7.5e-43 177.9 137 66.4
CDE04G1030 Ceratophyllum demersum HOM05D005851 ORTHO05D007137 7.5e-43 177.9 143 62.9
Phvul.002G151800 Phaseolus vulgaris HOM05D005851 ORTHO05D007137 9.8e-43 177.6 102 78.4
Lalb_Chr16g0379871 Lupinus albus HOM05D005851 ORTHO05D007137 3.7e-42 175.6 128 66.4
HPP92_025677 Vanilla planifolia HOM05D005851 ORTHO05D007137 4.9e-42 175.3 145 60.0
Zm00001eb103020 Zea mays HOM05D005851 ORTHO05D007137 6.4e-42 174.9 104 75.0
Pp3c10_11850 Physcomitrium patens HOM05D005851 ORTHO05D007137 2.7e-40 169.5 105 72.4
CANSAT95G0001 Cannabis sativa HOM05D005851 ORTHO05D007137 6.0e-40 168.3 148 62.2
Pp3c12_9510 Physcomitrium patens HOM05D005851 ORTHO05D007137 8.6e-39 164.5 144 56.9
Glyma.11G028600 Glycine max HOM05D005851 ORTHO05D007137 9.5e-38 161.0 86 84.9
Migut.E01010 Erythranthe guttata HOM05D005851 ORTHO05D007137 1.6e-37 160.2 167 55.1
Mapoly0066s0013 Marchantia polymorpha HOM05D005851 ORTHO05D007137 4.7e-37 158.7 112 65.2
DCAR_000876 Daucus carota HOM05D005851 ORTHO05D007137 6.2e-37 158.3 139 63.3
SMO364G0744 Selaginella moellendorffii HOM05D005851 ORTHO05D007137 2.3e-36 156.4 102 66.7
Ah.02g116130 Amaranthus hybridus HOM05D005851 ORTHO05D007137 2.0e-35 153.3 88 79.5
COL.COLO4_23838 Corchorus olitorius HOM05D005851 ORTHO05D007137 2.0e-35 153.3 82 85.4
FAN18G0436 Fragaria x ananassa HOM05D005851 ORTHO05D007137 7.5e-35 151.4 186 47.8
Sed0022049 Sechium edule HOM05D005851 ORTHO05D007137 7.5e-35 151.4 146 55.5
Manes.02G031801 Manihot esculenta HOM05D005851 ORTHO05D007137 1.3e-34 150.6 137 58.4
Nn1g01189 Nelumbo nucifera HOM05D005851 ORTHO05D007137 1.9e-33 146.7 149 58.4
Cre12.g555400 Chlamydomonas reinhardtii HOM05D005851 ORTHO05D007137 6.0e-32 141.7 99 63.6
SEGI_29987 Sequoiadendron giganteum HOM05D005851 ORTHO05D007137 3.0e-31 139.4 131 57.3
VMungo1215G2211 Vigna mungo HOM05D005851 ORTHO05D007137 1.2e-29 134.0 80 73.8
MCO03G553 Micromonas commoda HOM05D005851 ORTHO05D007137 2.2e-26 123.2 106 51.9
PRCOL_00002729 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 5.4e-25 118.6 133 48.1
PRCOL_00005435 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 2.7e-24 116.3 96 52.1
Hund14676 Selenicereus undatus HOM05D005851 ORTHO05D007137 4.3e-22 109.0 137 49.6
Lsat_1_v5_gn_6_10241 Lactuca sativa HOM05D005851 ORTHO05D007137 7.3e-22 108.2 94 60.6
MCO14G294 Micromonas commoda HOM05D005851 ORTHO05D007137 7.3e-22 108.2 93 51.6
Lj2A204T50 Lonicera japonica HOM05D005851 ORTHO05D007137 1.2e-21 107.5 47 97.9
MD04G1076900 Malus domestica HOM05D005851 ORTHO05D007137 1.2e-21 107.5 61 86.9
Thecc.03G264400 Theobroma cacao HOM05D005851 ORTHO05D007137 2.8e-21 106.3 94 56.4
ClCG00G000050 Citrullus lanatus HOM05D005851 ORTHO05D007137 4.7e-21 105.5 132 49.2
ClCG00G004660 Citrullus lanatus HOM05D005851 ORTHO05D007137 4.7e-21 105.5 139 47.5
ClCG00G005270 Citrullus lanatus HOM05D005851 ORTHO05D007137 4.7e-21 105.5 132 49.2
ClCG10G003300 Citrullus lanatus HOM05D005851 ORTHO05D007137 4.7e-21 105.5 132 49.2
Dinv39057 Davidia involucrata HOM05D005851 ORTHO05D007137 9.0e-20 101.3 58 81.0
MCO14G091 Micromonas commoda HOM05D005851 ORTHO05D007137 1.2e-19 100.9 130 40.0
Ca_06681_v3 Cicer arietinum L. HOM05D000943 ORTHO05D002475 3.8e-18 95.9 90 51.1
Eucgr.E00492 Eucalyptus grandis HOM05D005851 ORTHO05D007137 8.4e-18 94.7 66 65.2
PSO782G0540 Papaver somniferum HOM05D005851 ORTHO05D007137 1.9e-17 93.6 88 59.1
Nn4g26436 Nelumbo nucifera HOM05D005851 ORTHO05D007137 7.1e-17 91.7 59 72.9
unitig_699.g19746 Utricularia gibba HOM05D002021 ORTHO05D002077 1.2e-16 90.9 53 75.5
CBR_g50783 Chara braunii HOM05D000019 ORTHO05D000002 9.6e-14 81.3 81 50.6
PRCOL_00002728 Prasinoderma coloniale HOM05D005851 ORTHO05D049091 9.6e-14 81.3 144 34.7
Nitab4.5_0001884g0030 Nicotiana tabacum HOM05D005851 ORTHO05D007137 7.6e-11 71.6 102 47.1
BolC3t15330H Brassica oleracea HOM05D005851 ORTHO05D007137 1.4e-09 67.4 41 73.2
Lj2C204G6 Lonicera japonica HOM05D005851 ORTHO05D007137 3.9e-07 59.3 73 50.7
Aa31LG6G4700 Aethionema arabicum HOM05D000943 ORTHO05D002475 6.7e-07 58.5 40 72.5


User provided reference genes

Program Settings