Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g007410.4 Solanum lycopersicum HOM05D006632 ORTHO05D008224 2.4e-142 508.8 254 100.0
Sopen08g003360 Solanum pennellii HOM05D006632 ORTHO05D008224 6.4e-124 447.6 229 97.4
PGSC0003DMG400012506 Solanum tuberosum HOM05D006632 ORTHO05D008224 2.1e-119 432.6 229 93.9
Nitab4.5_0004059g0060 Nicotiana tabacum HOM05D006632 ORTHO05D008224 1.8e-102 376.3 233 82.0
Nitab4.5_0001707g0010 Nicotiana tabacum HOM05D006632 ORTHO05D008224 1.7e-100 369.8 243 77.4
Thecc.03G254100 Theobroma cacao HOM05D006632 ORTHO05D008224 4.2e-99 365.2 233 76.8
Oeu062975.1 Olea europaea HOM05D006632 ORTHO05D008224 2.1e-98 362.8 225 79.1
Cc08_g12700 Coffea canephora HOM05D006632 ORTHO05D008224 1.4e-97 360.1 236 76.7
Gohir.A12G219900 Gossypium hirsutum HOM05D006632 ORTHO05D008224 1.8e-97 359.8 229 76.9
Gorai.008G238100 Gossypium raimondii HOM05D006632 ORTHO05D008224 1.8e-97 359.8 229 76.9
Gohir.D12G222100 Gossypium hirsutum HOM05D006632 ORTHO05D008224 2.3e-97 359.4 229 76.9
CANSAT21G1011 Cannabis sativa HOM05D006632 ORTHO05D008224 1.7e-95 353.2 225 77.8
MELO3C013948.2 Cucumis melo HOM05D006632 ORTHO05D008224 2.8e-95 352.4 241 71.8
GSVIVG01001305001 Vitis vinifera HOM05D006632 ORTHO05D008224 3.7e-95 352.1 231 76.2
Lsat_1_v5_gn_6_91561 Lactuca sativa HOM05D006632 ORTHO05D008224 1.1e-94 350.5 229 76.0
Duzib205G0315 Durio zibethinus HOM05D006632 ORTHO05D008224 3.1e-94 349.0 227 75.3
Sed0019633 Sechium edule HOM05D006632 ORTHO05D008224 4.1e-94 348.6 239 71.5
Migut.A00961 Erythranthe guttata HOM05D006632 ORTHO05D008224 9.1e-94 347.4 241 73.4
Potri.003G111100 Populus trichocarpa HOM05D006632 ORTHO05D008224 2.0e-93 346.3 225 76.0
CAN.G1227.10 Capsicum annuum HOM05D006632 ORTHO05D008224 3.4e-93 345.5 178 92.7
Glyma.05G058200 Glycine max HOM05D006632 ORTHO05D008224 4.5e-93 345.1 225 75.1
Aa31LG2G12620 Aethionema arabicum HOM05D006632 ORTHO05D008224 5.9e-93 344.7 222 75.7
Potri.008G135980 Populus trichocarpa HOM05D006632 ORTHO05D008224 5.9e-93 344.7 225 76.4
AT4G16510 Arabidopsis thaliana HOM05D006632 ORTHO05D008224 7.7e-93 344.4 229 75.1
TWI81G0482 Tripterygium wilfordii HOM05D006632 ORTHO05D008224 7.7e-93 344.4 232 73.3
Carub.0007s2499 Capsella rubella HOM05D006632 ORTHO05D008224 1.0e-92 344.0 229 74.7
Cfa012746 Carpinus fangiana HOM05D006632 ORTHO05D008224 1.0e-92 344.0 229 75.5
Actinidia05199 Actinidia chinensis HOM05D006632 ORTHO05D008224 1.7e-92 343.2 231 74.9
CARHR222910 Cardamine hirsuta HOM05D006632 ORTHO05D008224 1.7e-92 343.2 222 76.6
Nn6g34002 Nelumbo nucifera HOM05D006632 ORTHO05D008224 2.2e-92 342.8 228 73.7
VMungo0251G2371 Vigna mungo HOM05D006632 ORTHO05D008224 2.2e-92 342.8 225 74.2
ClCG10G002780 Citrullus lanatus HOM05D006632 ORTHO05D008224 6.5e-92 341.3 231 73.6
Lj2A215T22 Lonicera japonica HOM05D006632 ORTHO05D008224 6.5e-92 341.3 229 74.2
Hma1.2p1_0916F.1_g236520 Hydrangea macrophylla HOM05D006632 ORTHO05D008224 1.1e-91 340.5 234 73.5
Prupe.5G072600 Prunus persica HOM05D006632 ORTHO05D008224 1.1e-91 340.5 232 74.1
AL7G38450 Arabidopsis lyrata HOM05D006632 ORTHO05D008224 1.9e-91 339.7 222 76.6
RcHm_v2.0_Chr7g0202881 Rosa chinensis HOM05D006632 ORTHO05D008224 2.5e-91 339.3 234 71.8
Rhsim07G0107100 Rhododendron simsii HOM05D006632 ORTHO05D008224 3.2e-91 339.0 230 74.8
TPR.G37669 Trifolium pratense HOM05D006632 ORTHO05D008224 3.2e-91 339.0 226 74.8
A08p12540 Brassica napus HOM05D006632 ORTHO05D008224 5.5e-91 338.2 228 74.1
BraA08t33245Z Brassica rapa HOM05D006632 ORTHO05D008224 5.5e-91 338.2 228 74.1
Psat4g070160 Pisum sativum HOM05D006632 ORTHO05D008224 7.2e-91 337.8 226 73.9
Nitab4.5_0000312g0210 Nicotiana tabacum HOM05D006632 ORTHO05D008224 1.6e-90 336.7 229 72.9
Phvul.003G219500 Phaseolus vulgaris HOM05D006632 ORTHO05D008224 3.6e-90 335.5 227 72.2
Sp7g15070 Schrenkiella parvula HOM05D006632 ORTHO05D008224 3.6e-90 335.5 223 75.3
Ciclev10022042m.g Citrus clementina HOM05D006632 ORTHO05D008224 4.7e-90 335.1 229 73.4
BolC8t48376H Brassica oleracea HOM05D006632 ORTHO05D008224 6.1e-90 334.7 222 75.2
Manes.01G079200 Manihot esculenta HOM05D006632 ORTHO05D008224 1.8e-89 333.2 232 72.4
arahy.Tifrunner.gnm1.ann1.E5X9TE Arachis hypogaea HOM05D006632 ORTHO05D008224 2.3e-89 332.8 233 70.0
CsaV3_3G002820 Cucumis sativus L. HOM05D006632 ORTHO05D008224 3.0e-89 332.4 207 76.3
Lalb_Chr05g0225741 Lupinus albus HOM05D006632 ORTHO05D008224 3.0e-89 332.4 225 71.6
PSO782G3692 Papaver somniferum HOM05D006632 ORTHO05D008224 3.9e-89 332.0 235 69.8
MSTRG.25531 Avicennia marina HOM05D006632 ORTHO05D008224 8.8e-89 330.9 228 72.4
Lj4g0001078 Lotus japonicus HOM05D006632 ORTHO05D008224 1.1e-88 330.5 228 72.8
PSO063G6697 Papaver somniferum HOM05D006632 ORTHO05D008224 1.1e-88 330.5 235 69.8
HanXRQChr03g0088651 Helianthus annuus HOM05D006632 ORTHO05D008224 1.5e-88 330.1 220 75.9
arahy.Tifrunner.gnm1.ann1.UQJ0AM Arachis hypogaea HOM05D006632 ORTHO05D008224 2.0e-88 329.7 233 69.5
Atru.chr9.1340 Acer truncatum HOM05D006632 ORTHO05D008224 3.3e-88 328.9 224 70.5
Haze_07882 Corylus avellana HOM05D006632 ORTHO05D008224 3.3e-88 328.9 222 74.3
CSS0044555 Camellia sinensis var. sinensis HOM05D006632 ORTHO05D008224 4.4e-88 328.6 234 69.7
CiPaw.11G152400 Carya illinoinensis HOM05D006632 ORTHO05D008224 5.7e-88 328.2 229 71.6
FAN18G2132 Fragaria x ananassa HOM05D006632 ORTHO05D008224 5.7e-88 328.2 233 71.2
Thhalv10026162m.g Eutrema salsugineum HOM05D006632 ORTHO05D008224 9.7e-88 327.4 222 73.9
ECA240G2825 Erigeron canadensis HOM05D006632 ORTHO05D008224 4.8e-87 325.1 227 71.4
PGR042G2887 Punica granatum HOM05D006632 ORTHO05D008224 1.4e-86 323.6 234 68.8
DCAR_027784 Daucus carota HOM05D006632 ORTHO05D008224 2.4e-86 322.8 236 68.6
MD06G1061300 Malus domestica HOM05D006632 ORTHO05D008224 2.4e-86 322.8 231 69.7
Medtr4g101100 Medicago truncatula HOM05D006632 ORTHO05D008224 2.4e-86 322.8 233 67.8
SGA_v2.0_scaffold120G32870 Striga asiatica HOM05D006632 ORTHO05D008224 7.0e-86 321.2 294 60.2
Sabra03G0077000 Salix brachista HOM05D006632 ORTHO05D008224 1.2e-85 320.5 264 64.0
vmacro14091 Vaccinium macrocarpon HOM05D006632 ORTHO05D008224 1.2e-85 320.5 273 62.6
FAN04G0341 Fragaria x ananassa HOM05D006632 ORTHO05D008224 4.5e-85 318.5 237 68.8
Rhsim07G0106500 Rhododendron simsii HOM05D006632 ORTHO05D008224 1.0e-84 317.4 297 58.9
THA.LOC104814709 Tarenaya hassleriana HOM05D006632 ORTHO05D008224 1.0e-84 317.4 229 69.0
Ah.12g056690 Amaranthus hybridus HOM05D006632 ORTHO05D008224 2.9e-84 315.8 224 68.8
Aqoxy5G03914 Aquilegia oxysepala HOM05D006632 ORTHO05D008224 2.9e-84 315.8 231 69.7
FAN08G0873 Fragaria x ananassa HOM05D006632 ORTHO05D008224 1.5e-83 313.5 234 67.9
AUR62039953 Chenopodium quinoa HOM05D006632 ORTHO05D008224 2.5e-83 312.8 223 72.2
FAN13G0450 Fragaria x ananassa HOM05D006632 ORTHO05D008224 4.7e-82 308.5 255 63.1
EL10Ac5g13049 Beta vulgaris HOM05D006632 ORTHO05D008224 4.0e-81 305.4 227 67.8
Eucgr.E00435 Eucalyptus grandis HOM05D006632 ORTHO05D008224 5.2e-81 305.1 242 63.6
CDE02G1947 Ceratophyllum demersum HOM05D006632 ORTHO05D008224 6.7e-81 304.7 178 79.8
AUR62007500 Chenopodium quinoa HOM05D006632 ORTHO05D008224 6.7e-81 304.7 224 69.6
Peaxi162Scf00102g01151 Petunia axillaris HOM05D006632 ORTHO05D008224 2.6e-80 302.8 231 69.7
unitig_27.g25096 Utricularia gibba HOM05D006632 ORTHO05D008224 2.0e-77 293.1 197 71.6
BcaC07g37993 Brassica carinata HOM05D006632 ORTHO05D008224 3.5e-77 292.4 196 74.5
HPP92_014478 Vanilla planifolia HOM05D006632 ORTHO05D008224 3.5e-77 292.4 235 63.4
Dinv21617 Davidia involucrata HOM05D006632 ORTHO05D008224 8.5e-76 287.7 229 67.2
Os02g0662200 Oryza sativa ssp. japonica HOM05D006632 ORTHO05D008224 2.3e-73 279.6 225 63.1
Sc01g0008570 Simmondsia chinensis HOM05D006632 ORTHO05D008224 3.4e-72 275.8 163 79.1
SEGI_31519 Sequoiadendron giganteum HOM05D006632 ORTHO05D008224 5.4e-70 268.5 227 59.0
Zm00001eb249830 Zea mays HOM05D006632 ORTHO05D008224 1.2e-69 267.3 226 61.1
MD00G1115100 Malus domestica HOM05D006632 ORTHO05D008224 1.3e-68 263.8 245 58.8
Pp3c24_4050 Physcomitrium patens HOM05D006632 ORTHO05D008224 1.3e-68 263.8 249 57.4
SMO143G0241 Selaginella moellendorffii HOM05D006632 ORTHO05D008224 5.0e-68 261.9 177 67.2
Mapoly0121s0036 Marchantia polymorpha HOM05D006632 ORTHO05D008224 5.5e-67 258.5 183 67.2
Hund14588 Selenicereus undatus HOM05D006632 ORTHO05D008224 5.5e-67 258.5 377 43.0
QL12p012693 Quercus lobata HOM05D006632 ORTHO05D008224 1.6e-66 256.9 188 71.3
Nitab4.5_0017825g0010 Nicotiana tabacum HOM05D006632 ORTHO05D008224 5.2e-65 251.9 189 67.2
DCAR_004945 Daucus carota HOM05D006632 ORTHO05D008224 7.0e-62 241.5 228 57.5
CBR_g26463 Chara braunii HOM05D006632 ORTHO05D008224 1.4e-57 227.3 177 59.3
SalBow6G7145 Salvia bowleyana HOM05D006632 ORTHO05D008224 4.9e-55 218.8 156 73.1
Cre07.g338250 Chlamydomonas reinhardtii HOM05D006632 ORTHO05D008224 1.3e-47 194.1 240 42.1
Ca_22220_v3 Cicer arietinum L. HOM05D006632 ORTHO05D008224 4.9e-47 192.2 159 64.8
Ca_21955_v3 Cicer arietinum L. HOM05D006632 ORTHO05D008224 1.9e-46 190.3 151 67.5
C01p26240 Brassica napus HOM05D006632 ORTHO05D008224 8.9e-41 171.4 133 69.9
BolC1t02568H Brassica oleracea HOM05D006632 ORTHO05D008224 8.9e-41 171.4 133 69.9
ATR0564G418 Amborella trichopoda HOM05D006632 ORTHO05D008224 9.2e-38 161.4 161 55.3
PRCOL_00001140 Prasinoderma coloniale HOM05D006632 ORTHO05D008224 2.5e-35 153.3 236 37.3
MCO15G182 Micromonas commoda HOM05D006632 ORTHO05D008224 3.3e-35 152.9 206 42.2
Dinv39125 Davidia involucrata HOM05D006632 ORTHO05D008224 6.2e-34 148.7 138 61.6
BraA01t02010Z Brassica rapa HOM05D006632 ORTHO05D008224 5.8e-32 142.1 149 55.7
A01p20910 Brassica napus HOM05D006632 ORTHO05D008224 4.9e-31 139.0 149 55.0
Peaxi162Scf00002g00156 Petunia axillaris HOM05D006632 ORTHO05D008224 5.4e-22 109.0 82 65.9
AagrBONN_evm.TU.Sc2ySwM_117.1014 Anthoceros agrestis HOM05D006632 ORTHO05D008224 6.0e-21 105.5 140 44.3
Cpa.g.sc276.6 Carica papaya HOM05D006632 ORTHO05D008224 8.7e-20 101.7 105 57.1
Duzib068G0053 Durio zibethinus HOM05D006632 ORTHO05D008224 1.1e-19 101.3 54 79.6
FvH4_5g00080 Fragaria vesca HOM05D011292 ORTHO05D013599 5.6e-19 99.0 102 56.9
DCAR_004944 Daucus carota HOM05D006632 ORTHO05D008224 2.0e-16 90.5 97 56.7
TAR636G0287 Trochodendron aralioides HOM05D006632 ORTHO05D008224 5.8e-16 89.0 100 53.0
Potri.001G122501 Populus trichocarpa HOM05D006632 ORTHO05D008224 5.1e-12 75.9 53 64.2
Sabra01G0094400 Salix brachista HOM05D006632 ORTHO05D008224 5.6e-11 72.4 48 66.7


User provided reference genes

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