Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g007030.3 Solanum lycopersicum HOM05D006861 ORTHO05D008620 1.7e-120 436.0 220 100.0
Sopen08g002990 Solanum pennellii HOM05D006861 ORTHO05D008620 1.0e-117 426.8 220 98.2
PGSC0003DMG400020500 Solanum tuberosum HOM05D006861 ORTHO05D008620 6.6e-117 424.1 220 96.8
Nitab4.5_0000535g0140 Nicotiana tabacum HOM05D006861 ORTHO05D008620 9.2e-111 403.7 219 89.0
Nitab4.5_0007026g0050 Nicotiana tabacum HOM05D006861 ORTHO05D008620 1.8e-106 389.4 221 86.4
CAN.G845.34 Capsicum annuum HOM05D006861 ORTHO05D008620 2.0e-105 386.0 223 86.1
Peaxi162Scf00102g00630 Petunia axillaris HOM05D006861 ORTHO05D008620 3.0e-101 372.1 218 83.9
GSVIVG01013176001 Vitis vinifera HOM05D006861 ORTHO05D008620 6.0e-78 294.7 213 65.7
Actinidia14818 Actinidia chinensis HOM05D006861 ORTHO05D008620 5.1e-77 291.6 217 65.4
Dinv28930 Davidia involucrata HOM05D006861 ORTHO05D008620 3.3e-76 288.9 215 64.2
Manes.17G013800 Manihot esculenta HOM05D006861 ORTHO05D008620 1.3e-75 287.0 216 63.4
SalBow6G5529 Salvia bowleyana HOM05D006861 ORTHO05D008620 2.4e-74 282.7 216 59.3
CSS0014670 Camellia sinensis var. sinensis HOM05D006861 ORTHO05D008620 4.1e-74 282.0 217 62.7
CSS0041220 Camellia sinensis var. sinensis HOM05D006861 ORTHO05D008620 4.1e-74 282.0 217 62.7
Cc08_g02400 Coffea canephora HOM05D006861 ORTHO05D008620 5.3e-74 281.6 222 61.3
Hma1.2p1_0585F.1_g183570 Hydrangea macrophylla HOM05D006861 ORTHO05D008620 5.3e-74 281.6 212 64.2
MSTRG.12154 Avicennia marina HOM05D006861 ORTHO05D008620 2.6e-73 279.3 217 60.4
Migut.A01006 Erythranthe guttata HOM05D006861 ORTHO05D008620 2.6e-73 279.3 217 59.9
DCAR_008287 Daucus carota HOM05D006861 ORTHO05D008620 4.5e-73 278.5 220 60.9
Lsat_1_v5_gn_8_112001 Lactuca sativa HOM05D006861 ORTHO05D008620 4.5e-73 278.5 215 61.9
ATR0049G013 Amborella trichopoda HOM05D006861 ORTHO05D008620 1.7e-72 276.6 216 60.2
Sc07g0008780 Simmondsia chinensis HOM05D006861 ORTHO05D008620 3.8e-72 275.4 216 58.8
Potri.003G089400 Populus trichocarpa HOM05D006861 ORTHO05D008620 5.0e-72 275.0 212 61.3
Medtr4g098640 Medicago truncatula HOM05D006861 ORTHO05D008620 1.9e-71 273.1 220 60.9
HanXRQChr16g0511531 Helianthus annuus HOM05D006861 ORTHO05D008620 2.5e-71 272.7 212 61.3
Ah.12g054700 Amaranthus hybridus HOM05D006861 ORTHO05D008620 4.2e-71 271.9 213 60.6
CANSAT21G0325 Cannabis sativa HOM05D006861 ORTHO05D008620 4.2e-71 271.9 218 60.1
Prupe.5G041200 Prunus persica HOM05D006861 ORTHO05D008620 4.2e-71 271.9 219 61.2
Rhsim07G0124500 Rhododendron simsii HOM05D006861 ORTHO05D008620 5.5e-71 271.6 217 60.8
Psat4g079280 Pisum sativum HOM05D006861 ORTHO05D008620 2.7e-70 269.2 216 59.7
MD06G1031100 Malus domestica HOM05D006861 ORTHO05D008620 4.6e-70 268.5 211 62.1
QL12p006269 Quercus lobata HOM05D006861 ORTHO05D008620 1.8e-69 266.5 230 58.3
TPR.G28655 Trifolium pratense HOM05D006861 ORTHO05D008620 1.8e-69 266.5 218 60.1
Ca_22062_v3 Cicer arietinum L. HOM05D006861 ORTHO05D008620 3.0e-69 265.8 222 59.9
TAR629G3318 Trochodendron aralioides HOM05D006861 ORTHO05D008620 5.1e-69 265.0 217 60.8
SGA_v2.0_scaffold198G41105 Striga asiatica HOM05D006861 ORTHO05D008620 6.7e-69 264.6 216 57.4
Sabra03G0059200 Salix brachista HOM05D006861 ORTHO05D008620 8.7e-69 264.2 212 59.4
Gohir.D12G212500 Gossypium hirsutum HOM05D006861 ORTHO05D008620 1.5e-68 263.5 226 58.0
ECA233G2855 Erigeron canadensis HOM05D006861 ORTHO05D008620 1.9e-68 263.1 214 60.3
AUR62007255 Chenopodium quinoa HOM05D006861 ORTHO05D008620 2.5e-68 262.7 218 56.0
EL10Ac5g12163 Beta vulgaris HOM05D006861 ORTHO05D008620 3.3e-68 262.3 213 59.2
Gohir.A12G209800 Gossypium hirsutum HOM05D006861 ORTHO05D008620 3.3e-68 262.3 226 57.5
Thecc.03G231500 Theobroma cacao HOM05D006861 ORTHO05D008620 4.3e-68 261.9 226 56.6
VMungo0251G0361 Vigna mungo HOM05D006861 ORTHO05D008620 1.3e-67 260.4 221 58.4
FvH4_5g21620 Fragaria vesca HOM05D006861 ORTHO05D008620 1.6e-67 260.0 212 59.0
Aqoxy3G02463 Aquilegia oxysepala HOM05D006861 ORTHO05D008620 2.8e-67 259.2 211 60.7
Cfa012408 Carpinus fangiana HOM05D006861 ORTHO05D008620 2.8e-67 259.2 213 60.1
Lj4g0014575 Lotus japonicus HOM05D006861 ORTHO05D008620 2.8e-67 259.2 220 57.3
FAN18G0349 Fragaria x ananassa HOM05D006861 ORTHO05D008620 3.7e-67 258.8 209 59.3
CiPaw.11G090800 Carya illinoinensis HOM05D006861 ORTHO05D008620 6.3e-67 258.1 219 56.2
Ciclev10032685m.g Citrus clementina HOM05D006861 ORTHO05D008620 6.3e-67 258.1 227 57.7
Haze_08270 Corylus avellana HOM05D006861 ORTHO05D008620 1.4e-66 256.9 218 58.3
Duzib205G0961 Durio zibethinus HOM05D006861 ORTHO05D008620 2.4e-66 256.1 226 57.1
RcHm_v2.0_Chr7g0209081 Rosa chinensis HOM05D006861 ORTHO05D008620 3.1e-66 255.8 211 56.9
Duzib068G0493 Durio zibethinus HOM05D006861 ORTHO05D008620 5.3e-66 255.0 225 56.4
Lalb_Chr09g0329521 Lupinus albus HOM05D006861 ORTHO05D008620 6.9e-66 254.6 225 56.4
arahy.Tifrunner.gnm1.ann1.A00F14 Arachis hypogaea HOM05D006861 ORTHO05D008620 9.0e-66 254.2 211 59.2
FAN13G1018 Fragaria x ananassa HOM05D006861 ORTHO05D008620 1.2e-65 253.8 209 59.3
Glyma.17G153700 Glycine max HOM05D006861 ORTHO05D008620 1.5e-65 253.4 220 57.3
arahy.Tifrunner.gnm1.ann1.P9U8RJ Arachis hypogaea HOM05D006861 ORTHO05D008620 2.0e-65 253.1 213 58.2
FAN08G0129 Fragaria x ananassa HOM05D006861 ORTHO05D008620 2.0e-65 253.1 212 59.0
Gorai.008G228100 Gossypium raimondii HOM05D006861 ORTHO05D008620 7.7e-65 251.1 237 54.9
THA.LOC104807964 Tarenaya hassleriana HOM05D006861 ORTHO05D008620 1.0e-64 250.8 215 57.7
Eucgr.D02180 Eucalyptus grandis HOM05D006861 ORTHO05D008620 1.3e-64 250.4 216 57.4
QL12p006401 Quercus lobata HOM05D006861 ORTHO05D008620 1.7e-64 250.0 188 62.8
CsaV3_3G001910 Cucumis sativus L. HOM05D006861 ORTHO05D008620 2.2e-64 249.6 211 55.5
FAN04G0264 Fragaria x ananassa HOM05D006861 ORTHO05D008620 2.2e-64 249.6 211 57.3
Glyma.05G113600 Glycine max HOM05D006861 ORTHO05D008620 2.2e-64 249.6 220 56.8
Gohir.D03G170200 Gossypium hirsutum HOM05D006861 ORTHO05D008620 6.5e-64 248.1 227 55.5
PSO063G6338 Papaver somniferum HOM05D006861 ORTHO05D008620 6.5e-64 248.1 215 55.3
PSO782G3300 Papaver somniferum HOM05D006861 ORTHO05D008620 6.5e-64 248.1 215 55.3
MELO3C013865.2 Cucumis melo HOM05D006861 ORTHO05D008620 8.5e-64 247.7 211 55.0
ClCG10G001830 Citrullus lanatus HOM05D006861 ORTHO05D008620 2.5e-63 246.1 211 55.5
Gorai.003G180500 Gossypium raimondii HOM05D006861 ORTHO05D008620 3.2e-63 245.7 227 55.1
Aa31LG9G15370 Aethionema arabicum HOM05D006861 ORTHO05D008620 1.2e-62 243.8 227 55.9
Gohir.A03G002100 Gossypium hirsutum HOM05D006861 ORTHO05D008620 1.6e-62 243.4 227 55.1
COL.COLO4_17076 Corchorus olitorius HOM05D006861 ORTHO05D008620 2.7e-62 242.7 226 54.4
Sed0027053 Sechium edule HOM05D006861 ORTHO05D008620 3.6e-62 242.3 211 54.5
Thhalv10017211m.g Eutrema salsugineum HOM05D006861 ORTHO05D008620 2.3e-61 239.6 212 58.5
vmacro14159 Vaccinium macrocarpon HOM05D006861 ORTHO05D008620 2.3e-61 239.6 207 58.0
Sp4g17580 Schrenkiella parvula HOM05D006861 ORTHO05D008620 3.0e-61 239.2 211 58.8
Carub.0004s1705 Capsella rubella HOM05D006861 ORTHO05D008620 3.9e-61 238.8 211 57.8
CARHR129520 Cardamine hirsuta HOM05D006861 ORTHO05D008620 6.7e-61 238.0 211 57.8
AT2G35360 Arabidopsis thaliana HOM05D006861 ORTHO05D008620 7.4e-60 234.6 211 55.9
A05p10410 Brassica napus HOM05D006861 ORTHO05D008620 9.7e-60 234.2 220 54.5
Os09g0573100 Oryza sativa ssp. japonica HOM05D006861 ORTHO05D008620 1.7e-59 233.4 219 57.1
BraA05t19976Z Brassica rapa HOM05D006861 ORTHO05D008620 2.2e-59 233.0 221 56.1
BcaC02g11640 Brassica carinata HOM05D006861 ORTHO05D008620 4.8e-59 231.9 212 58.0
C04p12840 Brassica napus HOM05D006861 ORTHO05D008620 4.8e-59 231.9 212 58.0
BolC4t22928H Brassica oleracea HOM05D006861 ORTHO05D008620 4.8e-59 231.9 212 58.0
HPP92_027725 Vanilla planifolia HOM05D006861 ORTHO05D008620 4.8e-59 231.9 213 54.0
CDE12G0071 Ceratophyllum demersum HOM05D006861 ORTHO05D008620 6.3e-59 231.5 191 55.5
AL4G31410 Arabidopsis lyrata HOM05D006861 ORTHO05D008620 1.1e-58 230.7 212 56.1
HPP92_028475 Vanilla planifolia HOM05D006861 ORTHO05D008620 1.8e-58 229.9 213 53.5
BcaB02g09437 Brassica carinata HOM05D006861 ORTHO05D008620 1.2e-57 227.3 212 57.1
Nn6g33632 Nelumbo nucifera HOM05D006861 ORTHO05D008620 2.6e-57 226.1 276 45.7
Zm00001eb307090 Zea mays HOM05D006861 ORTHO05D008620 2.9e-56 222.6 215 52.6
Hma1.2p1_0585F.1_g183580 Hydrangea macrophylla HOM05D006861 ORTHO05D008620 1.9e-55 219.9 211 53.6
TWI60G1564 Tripterygium wilfordii HOM05D006861 ORTHO05D008620 4.2e-55 218.8 215 53.5
AUR62018744 Chenopodium quinoa HOM05D006861 ORTHO05D008620 5.5e-55 218.4 218 48.2
SEGI_11276 Sequoiadendron giganteum HOM05D006861 ORTHO05D008620 2.7e-54 216.1 213 49.8
Phvul.003G229300 Phaseolus vulgaris HOM05D006861 ORTHO05D008620 6.5e-48 194.9 157 58.6
Pp3c1_27050 Physcomitrium patens HOM05D006861 ORTHO05D008620 8.0e-46 188.0 214 45.8
Lj2A243G18 Lonicera japonica HOM05D006861 ORTHO05D008620 1.8e-45 186.8 144 60.4
Dinv25198 Davidia involucrata HOM05D006861 ORTHO05D008620 1.5e-44 183.7 143 64.3
Actinidia09224 Actinidia chinensis HOM05D006861 ORTHO05D008620 9.7e-44 181.0 139 63.3
Gohir.A09G039700 Gossypium hirsutum HOM05D006861 ORTHO05D008620 1.5e-39 167.2 144 56.2
Cpa.g.sc90.59 Carica papaya HOM05D006861 ORTHO05D008620 1.9e-39 166.8 144 55.6
Hma1.2p1_2232F.1_g317620 Hydrangea macrophylla HOM05D006861 ORTHO05D008620 7.0e-34 148.3 213 39.4
HanXRQChr16g0517491 Helianthus annuus HOM05D006861 ORTHO05D008620 1.6e-33 147.1 124 56.5
Atru.BG.44.p Acer truncatum HOM05D006861 ORTHO05D008620 3.6e-30 136.0 115 54.8
CBR_g57857 Chara braunii HOM05D006861 ORTHO05D008620 7.3e-23 111.7 192 34.9
Cre12.g533400 Chlamydomonas reinhardtii HOM05D006861 ORTHO05D008620 3.1e-13 79.7 180 32.2
PRCOL_00000188 Prasinoderma coloniale HOM05D006861 ORTHO05D008620 7.5e-12 75.1 98 39.8
MCO13G047 Micromonas commoda HOM05D006861 ORTHO05D008620 1.2e-06 57.8 195 28.7


User provided reference genes

Program Settings