Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g006930.3 Solanum lycopersicum HOM05D005265 ORTHO05D006326 1.4e-66 256.1 131 100.0
PGSC0003DMG400020505 Solanum tuberosum HOM05D005265 ORTHO05D006326 3.2e-66 255.0 131 98.5
Sopen08g002900 Solanum pennellii HOM05D005265 ORTHO05D006326 4.1e-66 254.6 131 99.2
CAN.G1882.1 Capsicum annuum HOM05D005265 ORTHO05D006326 4.3e-63 244.6 131 94.7
Nitab4.5_0003368g0030 Nicotiana tabacum HOM05D005265 ORTHO05D006326 2.0e-60 235.7 131 90.8
Peaxi162Scf00045g02242 Petunia axillaris HOM05D005265 ORTHO05D006326 3.4e-60 235.0 132 91.7
Nitab4.5_0002991g0030 Nicotiana tabacum HOM05D005265 ORTHO05D006326 1.3e-59 233.0 131 89.3
Nitab4.5_0001809g0020 Nicotiana tabacum HOM05D005265 ORTHO05D006326 2.4e-58 228.8 131 88.5
Nitab4.5_0000100g0280 Nicotiana tabacum HOM05D005265 ORTHO05D006326 7.1e-58 227.3 131 87.8
VMungo1309G1099 Vigna mungo HOM05D005265 ORTHO05D006326 2.7e-57 225.3 131 87.8
AT1G30380 Arabidopsis thaliana HOM05D005265 ORTHO05D006326 3.5e-57 224.9 131 85.5
CARHR029770 Cardamine hirsuta HOM05D005265 ORTHO05D006326 4.6e-57 224.6 131 85.5
arahy.Tifrunner.gnm1.ann1.9042LP Arachis hypogaea HOM05D005265 ORTHO05D006326 6.0e-57 224.2 131 86.3
BcaB03g12211 Brassica carinata HOM05D005265 ORTHO05D006326 1.0e-56 223.4 131 85.5
arahy.Tifrunner.gnm1.ann1.ZS1M1K Arachis hypogaea HOM05D005265 ORTHO05D006326 1.3e-56 223.0 131 86.3
Migut.M01877 Erythranthe guttata HOM05D005265 ORTHO05D006326 1.7e-56 222.6 131 86.3
BcaC01g00188 Brassica carinata HOM05D005265 ORTHO05D006326 3.0e-56 221.9 131 84.7
A08p24490 Brassica napus HOM05D005265 ORTHO05D006326 3.0e-56 221.9 131 84.7
C03p76720 Brassica napus HOM05D005265 ORTHO05D006326 3.0e-56 221.9 131 84.7
BraA08t34405Z Brassica rapa HOM05D005265 ORTHO05D006326 3.0e-56 221.9 131 84.7
GSVIVG01021584001 Vitis vinifera HOM05D005265 ORTHO05D006326 3.0e-56 221.9 131 87.0
Dinv15893 Davidia involucrata HOM05D005265 ORTHO05D006326 3.9e-56 221.5 131 84.0
Phvul.009G216400 Phaseolus vulgaris HOM05D005265 ORTHO05D006326 3.9e-56 221.5 131 86.3
Glyma.15G194300 Glycine max HOM05D005265 ORTHO05D006326 5.1e-56 221.1 131 85.5
Lj1g0015817 Lotus japonicus HOM05D005265 ORTHO05D006326 5.1e-56 221.1 131 85.5
Hma1.2p1_0689F.1_g203690 Hydrangea macrophylla HOM05D005265 ORTHO05D006326 8.6e-56 220.3 131 83.2
Hma1.2p1_1418F.1_g282220 Hydrangea macrophylla HOM05D005265 ORTHO05D006326 8.6e-56 220.3 131 83.2
THA.LOC104814318 Tarenaya hassleriana HOM05D005265 ORTHO05D006326 8.6e-56 220.3 133 86.5
BraA09t39132Z Brassica rapa HOM05D005265 ORTHO05D006326 1.9e-55 219.2 132 84.8
Sp1g26220 Schrenkiella parvula HOM05D005265 ORTHO05D006326 1.9e-55 219.2 131 83.2
Oeu040090.1 Olea europaea HOM05D005265 ORTHO05D006326 2.5e-55 218.8 131 84.0
Phvul.002G140800 Phaseolus vulgaris HOM05D005265 ORTHO05D006326 2.5e-55 218.8 131 86.3
PGR083G1323 Punica granatum HOM05D005265 ORTHO05D006326 3.3e-55 218.4 131 84.7
Ca_12734_v3 Cicer arietinum L. HOM05D005265 ORTHO05D006326 4.3e-55 218.0 132 85.6
Ca_12740_v3 Cicer arietinum L. HOM05D005265 ORTHO05D006326 4.3e-55 218.0 132 85.6
Dinv32199 Davidia involucrata HOM05D005265 ORTHO05D006326 4.3e-55 218.0 131 82.4
THA.LOC104812683 Tarenaya hassleriana HOM05D005265 ORTHO05D006326 4.3e-55 218.0 131 84.7
BcaC05g27071 Brassica carinata HOM05D005265 ORTHO05D006326 5.6e-55 217.6 132 84.1
A09p36080 Brassica napus HOM05D005265 ORTHO05D006326 5.6e-55 217.6 132 84.1
C05p29330 Brassica napus HOM05D005265 ORTHO05D006326 5.6e-55 217.6 132 84.1
BolC5t31665H Brassica oleracea HOM05D005265 ORTHO05D006326 5.6e-55 217.6 132 84.1
DCAR_004804 Daucus carota HOM05D005265 ORTHO05D006326 5.6e-55 217.6 131 84.0
SalBow8G5437 Salvia bowleyana HOM05D005265 ORTHO05D006326 9.5e-55 216.9 131 84.7
AL1G44320 Arabidopsis lyrata HOM05D005265 ORTHO05D006326 1.2e-54 216.5 132 83.3
Carub.0001s2858 Capsella rubella HOM05D005265 ORTHO05D006326 1.2e-54 216.5 131 84.7
DCAR_004805 Daucus carota HOM05D005265 ORTHO05D006326 1.2e-54 216.5 131 83.2
Cpa.g.sc17.68 Carica papaya HOM05D005265 ORTHO05D006326 2.1e-54 215.7 131 83.2
Thecc.02G010800 Theobroma cacao HOM05D005265 ORTHO05D006326 3.6e-54 214.9 131 82.4
CANSAT35G0137 Cannabis sativa HOM05D005265 ORTHO05D006326 4.7e-54 214.5 131 82.4
Manes.14G134800 Manihot esculenta HOM05D005265 ORTHO05D006326 4.7e-54 214.5 131 82.4
Haze_05746 Corylus avellana HOM05D005265 ORTHO05D006326 6.2e-54 214.2 131 80.9
MSTRG.7528 Avicennia marina HOM05D005265 ORTHO05D006326 8.1e-54 213.8 133 83.5
HanXRQChr04g0113581 Helianthus annuus HOM05D005265 ORTHO05D006326 1.1e-53 213.4 131 83.2
Thhalv10009090m.g Eutrema salsugineum HOM05D005265 ORTHO05D006326 1.4e-53 213.0 132 82.6
Glyma.09G087700 Glycine max HOM05D005265 ORTHO05D006326 1.4e-53 213.0 134 84.3
Manes.06G061100 Manihot esculenta HOM05D005265 ORTHO05D006326 1.4e-53 213.0 130 83.1
Duzib132G0868 Durio zibethinus HOM05D005265 ORTHO05D006326 2.3e-53 212.2 131 82.4
CiPaw.10G086700 Carya illinoinensis HOM05D005265 ORTHO05D006326 3.1e-53 211.8 131 81.7
COL.COLO4_17668 Corchorus olitorius HOM05D005265 ORTHO05D006326 3.1e-53 211.8 131 80.9
BcaB07g32648 Brassica carinata HOM05D005265 ORTHO05D006326 4.0e-53 211.5 131 81.7
BolC3t19927H Brassica oleracea HOM05D005265 ORTHO05D006326 4.0e-53 211.5 131 83.2
CSS0007721 Camellia sinensis var. sinensis HOM05D005265 ORTHO05D006326 4.0e-53 211.5 132 82.6
CSS0016265 Camellia sinensis var. sinensis HOM05D005265 ORTHO05D006326 4.0e-53 211.5 132 82.6
CiPaw.09G117100 Carya illinoinensis HOM05D005265 ORTHO05D006326 4.0e-53 211.5 131 82.4
FAN25G1721 Fragaria x ananassa HOM05D005265 ORTHO05D006326 4.0e-53 211.5 130 83.1
RcHm_v2.0_Chr5g0015361 Rosa chinensis HOM05D005265 ORTHO05D006326 5.2e-53 211.1 130 83.1
Lalb_Chr08g0233241 Lupinus albus HOM05D005265 ORTHO05D006326 6.8e-53 210.7 131 80.2
FAN16G0550 Fragaria x ananassa HOM05D005265 ORTHO05D006326 1.2e-52 209.9 130 82.3
Cfa000859 Carpinus fangiana HOM05D005265 ORTHO05D006326 1.5e-52 209.5 131 79.4
Cc09_g08490 Coffea canephora HOM05D005265 ORTHO05D006326 1.5e-52 209.5 131 78.6
ECA236G4370 Erigeron canadensis HOM05D005265 ORTHO05D006326 1.5e-52 209.5 133 81.2
EL10Ac7g15766 Beta vulgaris HOM05D005265 ORTHO05D006326 2.0e-52 209.1 131 82.4
FvH4_3g09680 Fragaria vesca HOM05D005265 ORTHO05D006326 2.6e-52 208.8 130 81.5
FAN11G2263 Fragaria x ananassa HOM05D005265 ORTHO05D006326 2.6e-52 208.8 130 81.5
TAR624G1044 Trochodendron aralioides HOM05D005265 ORTHO05D006326 2.6e-52 208.8 131 80.9
Aa31LG6G5400 Aethionema arabicum HOM05D005265 ORTHO05D006326 3.4e-52 208.4 132 80.3
Medtr1g026820 Medicago truncatula HOM05D005265 ORTHO05D006326 3.4e-52 208.4 132 83.3
Sc24g0001600 Simmondsia chinensis HOM05D005265 ORTHO05D006326 3.4e-52 208.4 131 80.2
Prupe.4G088200 Prunus persica HOM05D005265 ORTHO05D006326 4.4e-52 208.0 130 82.3
Gohir.D02G238400 Gossypium hirsutum HOM05D005265 ORTHO05D006326 5.8e-52 207.6 130 80.0
Gorai.005G266900 Gossypium raimondii HOM05D005265 ORTHO05D006326 5.8e-52 207.6 130 80.0
Potri.006G254200 Populus trichocarpa HOM05D005265 ORTHO05D006326 5.8e-52 207.6 132 83.3
HanXRQChr15g0481551 Helianthus annuus HOM05D005265 ORTHO05D006326 7.6e-52 207.2 131 80.9
AUR62038135 Chenopodium quinoa HOM05D005265 ORTHO05D006326 9.9e-52 206.8 132 82.6
Eucgr.D00234 Eucalyptus grandis HOM05D005265 ORTHO05D006326 9.9e-52 206.8 132 81.1
SGA_v2.0_scaffold223G42844 Striga asiatica HOM05D005265 ORTHO05D006326 1.7e-51 206.1 131 81.7
Atru.chr10.966 Acer truncatum HOM05D005265 ORTHO05D006326 4.9e-51 204.5 131 81.7
Gohir.A03G216800 Gossypium hirsutum HOM05D005265 ORTHO05D006326 4.9e-51 204.5 130 79.2
QL05p054070 Quercus lobata HOM05D005265 ORTHO05D006326 4.9e-51 204.5 131 79.4
TWI09G0405 Tripterygium wilfordii HOM05D005265 ORTHO05D006326 4.9e-51 204.5 132 78.0
Ciclev10017170m.g Citrus clementina HOM05D005265 ORTHO05D006326 8.4e-51 203.8 129 81.4
MD05G1276100 Malus domestica HOM05D005265 ORTHO05D006326 8.4e-51 203.8 134 79.9
TAR626G0103 Trochodendron aralioides HOM05D005265 ORTHO05D006326 8.4e-51 203.8 130 79.2
Sabra18G0029900 Salix brachista HOM05D005265 ORTHO05D006326 1.4e-50 203.0 132 80.3
Actinidia13436 Actinidia chinensis HOM05D005265 ORTHO05D006326 1.9e-50 202.6 131 79.4
AUR62009823 Chenopodium quinoa HOM05D005265 ORTHO05D006326 1.9e-50 202.6 132 81.1
unitig_61.g26080 Utricularia gibba HOM05D005265 ORTHO05D006326 3.2e-50 201.8 126 81.0
TAR626G0742 Trochodendron aralioides HOM05D005265 ORTHO05D006326 4.1e-50 201.4 130 78.5
ClCG01G025030 Citrullus lanatus HOM05D005265 ORTHO05D006326 5.4e-50 201.1 132 78.8
Potri.018G027600 Populus trichocarpa HOM05D005265 ORTHO05D006326 7.1e-50 200.7 132 81.8
MD00G1109700 Malus domestica HOM05D005265 ORTHO05D006326 9.2e-50 200.3 130 78.5
TPR.G24497 Trifolium pratense HOM05D005265 ORTHO05D006326 9.2e-50 200.3 133 80.5
Duzib248G0887 Durio zibethinus HOM05D005265 ORTHO05D006326 1.2e-49 199.9 131 80.2
CDE01G0641 Ceratophyllum demersum HOM05D005265 ORTHO05D006326 1.6e-49 199.5 130 76.9
CDE12G0489 Ceratophyllum demersum HOM05D005265 ORTHO05D006326 2.7e-49 198.7 130 76.2
Sed0026922 Sechium edule HOM05D005265 ORTHO05D006326 2.7e-49 198.7 133 79.7
vmacro03415 Vaccinium macrocarpon HOM05D005265 ORTHO05D006326 2.7e-49 198.7 131 77.9
Actinidia33666 Actinidia chinensis HOM05D005265 ORTHO05D006326 6.0e-49 197.6 131 77.9
Aqoxy4G00026 Aquilegia oxysepala HOM05D005265 ORTHO05D006326 6.0e-49 197.6 130 78.5
Lsat_1_v5_gn_7_32001 Lactuca sativa HOM05D005265 ORTHO05D006326 6.0e-49 197.6 132 78.8
Sed0012654 Sechium edule HOM05D005265 ORTHO05D006326 6.0e-49 197.6 132 79.5
CsaV3_6G052210 Cucumis sativus L. HOM05D005265 ORTHO05D006326 7.8e-49 197.2 130 79.2
Duzib052G0655 Durio zibethinus HOM05D005265 ORTHO05D006326 7.8e-49 197.2 131 78.6
PSO541G2745 Papaver somniferum HOM05D005265 ORTHO05D006326 1.0e-48 196.8 130 78.5
PSO675G1042 Papaver somniferum HOM05D005265 ORTHO05D006326 1.0e-48 196.8 130 78.5
TWI73G0862 Tripterygium wilfordii HOM05D005265 ORTHO05D006326 3.9e-48 194.9 132 75.8
MELO3C007091.2 Cucumis melo HOM05D005265 ORTHO05D006326 1.5e-47 193.0 132 78.0
MBI02_g44634_MAGBIO Magnolia biondii HOM05D005265 ORTHO05D006326 7.3e-47 190.7 130 76.2
MBI02_g40641_MAGBIO Magnolia biondii HOM05D005265 ORTHO05D006326 1.2e-46 189.9 130 76.2
Ah.08g216220 Amaranthus hybridus HOM05D000506 ORTHO05D000369 1.6e-46 189.5 124 77.4
Psat0s1315g0080 Pisum sativum HOM05D005265 ORTHO05D006326 1.6e-46 189.5 163 65.6
HPP92_019500 Vanilla planifolia HOM05D005265 ORTHO05D006326 2.4e-45 185.7 129 76.7
FAN21G2293 Fragaria x ananassa HOM05D005265 ORTHO05D006326 3.1e-45 185.3 177 61.0
Rhsim13G0119400 Rhododendron simsii HOM05D005265 ORTHO05D006326 4.4e-44 181.4 131 73.3
Hund18717 Selenicereus undatus HOM05D005265 ORTHO05D006326 9.9e-44 180.3 137 72.3
Lalb_Chr23g0275991 Lupinus albus HOM05D005265 ORTHO05D006326 2.9e-43 178.7 103 85.4
ATR0681G400 Amborella trichopoda HOM05D005265 ORTHO05D006326 1.6e-41 172.9 124 75.0
Zm00001eb299990 Zea mays HOM05D005265 ORTHO05D006326 1.6e-41 172.9 130 68.5
Sp4g16930 Schrenkiella parvula HOM05D005265 ORTHO05D006326 6.0e-41 171.0 133 68.4
Os07g0148900 Oryza sativa ssp. japonica HOM05D005265 ORTHO05D006326 3.9e-40 168.3 124 69.4
Pp3c13_10540 Physcomitrium patens HOM05D005265 ORTHO05D006326 1.9e-39 166.0 132 66.7
Pp3c3_10740 Physcomitrium patens HOM05D005265 ORTHO05D006326 3.3e-39 165.2 132 68.2
SEGI_05857 Sequoiadendron giganteum HOM05D005265 ORTHO05D006326 2.4e-37 159.1 133 63.9
Mapoly0125s0033 Marchantia polymorpha HOM05D005265 ORTHO05D006326 4.0e-37 158.3 103 77.7
Nn3g20272 Nelumbo nucifera HOM05D005265 ORTHO05D006326 8.4e-35 150.6 129 66.7
Nn4g26654 Nelumbo nucifera HOM05D005265 ORTHO05D006326 8.4e-35 150.6 129 67.4
Pp3c13_10520 Physcomitrium patens HOM05D005265 ORTHO05D006326 1.0e-32 143.7 132 61.4
AagrBONN_evm.TU.Sc2ySwM_369.184 Anthoceros agrestis HOM05D005265 ORTHO05D006326 3.6e-30 135.2 120 63.3
CBR_g39729 Chara braunii HOM05D005265 ORTHO05D006326 1.1e-23 113.6 127 49.6
SMO358G0410 Selaginella moellendorffii HOM05D005265 ORTHO05D006326 6.2e-22 107.8 78 71.8
Cre17.g724300 Chlamydomonas reinhardtii HOM05D005265 ORTHO05D006326 2.0e-20 102.8 105 55.2
Nn8g40769 Nelumbo nucifera HOM05D005265 ORTHO05D006326 5.1e-16 88.2 68 66.2
RcHm_v2.0_Chr5g0036151 Rosa chinensis HOM05D005265 ORTHO05D006326 4.1e-13 78.6 48 81.2
PRCOL_00005455 Prasinoderma coloniale HOM05D005265 ORTHO05D006326 3.5e-09 65.5 92 40.2
MCO04G068 Micromonas commoda HOM05D005265 ORTHO05D006326 5.1e-08 61.6 78 42.3


User provided reference genes

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