Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g006840.3 Solanum lycopersicum HOM05D003936 ORTHO05D004747 7.2e-184 647.1 328 100.0
Sopen08g002790 Solanum pennellii HOM05D003936 ORTHO05D004747 1.1e-168 596.7 312 97.4
Nitab4.5_0000114g0150 Nicotiana tabacum HOM05D003936 ORTHO05D004747 1.3e-113 413.7 312 71.8
Dinv23312 Davidia involucrata HOM05D003936 ORTHO05D004747 1.2e-98 364.0 301 64.8
Nn2g12258 Nelumbo nucifera HOM05D003936 ORTHO05D004747 1.9e-96 356.7 311 61.7
Duzib212G0318 Durio zibethinus HOM05D003936 ORTHO05D004747 2.8e-95 352.8 305 63.3
Actinidia18230 Actinidia chinensis HOM05D003936 ORTHO05D004747 2.0e-93 346.7 301 63.5
CSS0006918 Camellia sinensis var. sinensis HOM05D003936 ORTHO05D004747 3.4e-93 345.9 301 62.1
Prupe.3G095300 Prunus persica HOM05D003936 ORTHO05D004747 1.7e-92 343.6 318 58.8
Thecc.06G036500 Theobroma cacao HOM05D003936 ORTHO05D004747 4.9e-92 342.0 304 63.5
TAR636G3155 Trochodendron aralioides HOM05D003936 ORTHO05D004747 2.4e-91 339.7 315 60.6
QL05p034110 Quercus lobata HOM05D003936 ORTHO05D004747 3.2e-91 339.3 308 63.0
Atru.chr10.2382 Acer truncatum HOM05D003936 ORTHO05D004747 7.1e-91 338.2 306 60.8
Cpa.g.sc10.123 Carica papaya HOM05D003936 ORTHO05D004747 1.2e-90 337.4 307 60.6
Oeu029910.1 Olea europaea HOM05D003936 ORTHO05D004747 1.1e-88 330.9 335 55.8
Actinidia25443 Actinidia chinensis HOM05D003936 ORTHO05D004747 1.5e-88 330.5 301 61.5
Sed0026159 Sechium edule HOM05D003936 ORTHO05D004747 5.6e-88 328.6 298 60.1
Cfa001907 Carpinus fangiana HOM05D003936 ORTHO05D004747 1.1e-86 324.3 309 59.5
MELO3C017854.2 Cucumis melo HOM05D003936 ORTHO05D004747 1.4e-86 323.9 299 58.2
Eucgr.F03943 Eucalyptus grandis HOM05D003936 ORTHO05D004747 2.0e-85 320.1 314 57.3
CsaV3_4G001790 Cucumis sativus L. HOM05D003936 ORTHO05D004747 2.6e-85 319.7 299 56.5
CiPaw.01G252100 Carya illinoinensis HOM05D003936 ORTHO05D004747 4.5e-85 318.9 303 61.4
Potri.003G178800 Populus trichocarpa HOM05D003936 ORTHO05D004747 4.5e-85 318.9 304 58.9
Gorai.010G223800 Gossypium raimondii HOM05D003936 ORTHO05D004747 1.7e-84 317.0 302 58.3
Lalb_Chr25g0279171 Lupinus albus HOM05D003936 ORTHO05D004747 1.9e-83 313.5 306 56.2
Rhsim08G0208400 Rhododendron simsii HOM05D003936 ORTHO05D004747 1.9e-83 313.5 371 53.1
TWI12G0163 Tripterygium wilfordii HOM05D003936 ORTHO05D004747 1.9e-83 313.5 306 57.5
Gohir.D06G190700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 2.4e-83 313.2 302 57.9
vmacro19035 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 2.1e-82 310.1 335 54.6
MBI14_g15650_MAGBIO Magnolia biondii HOM05D003936 ORTHO05D004747 3.5e-82 309.3 312 56.1
vmacro17364 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 7.9e-82 308.1 342 53.5
MSTRG.11168 Avicennia marina HOM05D003936 ORTHO05D004747 1.3e-81 307.4 311 57.2
Ciclev10025627m.g Citrus clementina HOM05D003936 ORTHO05D004747 6.7e-81 305.1 306 56.5
Peaxi162Scf00045g02127 Petunia axillaris HOM05D003936 ORTHO05D004747 4.3e-80 302.4 201 80.1
Sed0007390 Sechium edule HOM05D003936 ORTHO05D004747 5.6e-80 302.0 305 55.7
MD17G1219800 Malus domestica HOM05D003936 ORTHO05D004747 2.8e-79 299.7 303 56.1
ATR0584G049 Amborella trichopoda HOM05D003936 ORTHO05D004747 1.2e-77 294.3 310 54.8
Gohir.A06G183700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 1.2e-77 294.3 302 55.0
CANSAT11G1020 Cannabis sativa HOM05D003936 ORTHO05D004747 2.0e-77 293.5 302 54.0
Ca_29510_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 1.3e-76 290.8 250 63.6
THA.LOC104812450 Tarenaya hassleriana HOM05D003936 ORTHO05D004747 2.9e-76 289.7 306 52.3
Carub.0002s2693 Capsella rubella HOM05D003936 ORTHO05D004747 3.8e-76 289.3 304 53.9
CARHR073900 Cardamine hirsuta HOM05D003936 ORTHO05D004747 4.9e-76 288.9 246 64.6
FvH4_6g28960 Fragaria vesca HOM05D003936 ORTHO05D004747 3.2e-75 286.2 309 55.0
arahy.Tifrunner.gnm1.ann1.17KRJ7 Arachis hypogaea HOM05D003936 ORTHO05D004747 4.2e-75 285.8 312 53.8
arahy.Tifrunner.gnm1.ann1.6RSI2J Arachis hypogaea HOM05D003936 ORTHO05D004747 4.2e-75 285.8 312 53.8
Sp5g35150 Schrenkiella parvula HOM05D003936 ORTHO05D004747 4.2e-75 285.8 293 56.3
Aa31LG4G900 Aethionema arabicum HOM05D003936 ORTHO05D004747 7.1e-75 285.0 298 55.7
ClCG07G012350 Citrullus lanatus HOM05D003936 ORTHO05D004747 1.6e-74 283.9 374 47.3
Lj3g0027357 Lotus japonicus HOM05D003936 ORTHO05D004747 3.5e-74 282.7 240 62.9
Nitab4.5_0012293g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 3.5e-74 282.7 245 62.9
RcHm_v2.0_Chr2g0133511 Rosa chinensis HOM05D003936 ORTHO05D004747 4.6e-74 282.3 300 56.0
FAN09G0504 Fragaria x ananassa HOM05D003936 ORTHO05D004747 7.9e-74 281.6 320 53.8
A07p45080 Brassica napus HOM05D003936 ORTHO05D004747 1.0e-73 281.2 296 53.7
BolC6t40405H Brassica oleracea HOM05D003936 ORTHO05D004747 1.3e-73 280.8 296 53.4
C06p53910 Brassica napus HOM05D003936 ORTHO05D004747 1.8e-73 280.4 312 52.6
BolC5t30137H Brassica oleracea HOM05D003936 ORTHO05D004747 3.0e-73 279.6 240 62.5
BraA07t32011Z Brassica rapa HOM05D003936 ORTHO05D004747 3.0e-73 279.6 296 53.4
Sp1g14110 Schrenkiella parvula HOM05D003936 ORTHO05D004747 3.0e-73 279.6 316 54.1
Thhalv10018593m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 6.7e-73 278.5 299 53.5
C05p14060 Brassica napus HOM05D003936 ORTHO05D004747 8.7e-73 278.1 243 62.1
FAN02G3242 Fragaria x ananassa HOM05D003936 ORTHO05D004747 8.7e-73 278.1 320 53.4
FAN14G5707 Fragaria x ananassa HOM05D003936 ORTHO05D004747 8.7e-73 278.1 320 53.1
Phvul.010G158900 Phaseolus vulgaris HOM05D003936 ORTHO05D004747 8.7e-73 278.1 279 55.2
Hma1.2p1_0135F.1_g061770 Hydrangea macrophylla HOM05D003936 ORTHO05D004747 1.5e-72 277.3 303 54.8
Medtr4g009100 Medicago truncatula HOM05D003936 ORTHO05D004747 1.5e-72 277.3 261 59.0
PGR102G1525 Punica granatum HOM05D003936 ORTHO05D004747 1.5e-72 277.3 311 53.1
unitig_27.g24954 Utricularia gibba HOM05D003936 ORTHO05D004747 1.5e-72 277.3 303 54.1
AT1G80620 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 1.9e-72 276.9 259 57.1
BolC2t09719H Brassica oleracea HOM05D003936 ORTHO05D004747 3.3e-72 276.2 297 53.9
CARHR016320 Cardamine hirsuta HOM05D003936 ORTHO05D004747 3.3e-72 276.2 316 50.9
FAN05G1488 Fragaria x ananassa HOM05D003936 ORTHO05D004747 3.3e-72 276.2 320 52.8
BcaC03g15942 Brassica carinata HOM05D003936 ORTHO05D004747 5.7e-72 275.4 297 53.9
VMungo0331G1494 Vigna mungo HOM05D003936 ORTHO05D004747 5.7e-72 275.4 283 53.0
A06p11880 Brassica napus HOM05D003936 ORTHO05D004747 9.6e-72 274.6 243 61.3
BraA06t24358Z Brassica rapa HOM05D003936 ORTHO05D004747 9.6e-72 274.6 243 61.3
Cc04_g04830 Coffea canephora HOM05D003936 ORTHO05D004747 9.6e-72 274.6 264 57.2
Migut.I00724 Erythranthe guttata HOM05D003936 ORTHO05D004747 9.6e-72 274.6 321 52.0
TPR.G29720 Trifolium pratense HOM05D003936 ORTHO05D004747 2.8e-71 273.1 335 49.9
BcaB05g25240 Brassica carinata HOM05D003936 ORTHO05D004747 3.7e-71 272.7 240 61.2
AUR62011450 Chenopodium quinoa HOM05D003936 ORTHO05D004747 4.8e-71 272.3 323 50.5
CDE02G1505 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 6.3e-71 271.9 316 51.6
A09p61160 Brassica napus HOM05D003936 ORTHO05D004747 1.1e-70 271.2 275 54.9
BolC8t52022H Brassica oleracea HOM05D003936 ORTHO05D004747 1.4e-70 270.8 273 54.9
BraA09t41490Z Brassica rapa HOM05D003936 ORTHO05D004747 1.4e-70 270.8 275 54.5
C02p37040 Brassica napus HOM05D003936 ORTHO05D004747 3.1e-70 269.6 296 53.4
A02p23300 Brassica napus HOM05D003936 ORTHO05D004747 4.1e-70 269.2 297 52.9
Thhalv10007635m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 4.1e-70 269.2 303 52.5
BraA02t07326Z Brassica rapa HOM05D003936 ORTHO05D004747 5.3e-70 268.9 297 52.9
Carub.0001s1560 Capsella rubella HOM05D003936 ORTHO05D004747 1.5e-69 267.3 321 49.8
Psat7g258560 Pisum sativum HOM05D003936 ORTHO05D004747 1.5e-69 267.3 346 49.4
Sabra03G0131100 Salix brachista HOM05D003936 ORTHO05D004747 1.5e-69 267.3 347 48.4
EL10Ac9g21843 Beta vulgaris HOM05D003936 ORTHO05D004747 2.6e-69 266.5 337 50.4
AL1G27960 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 5.9e-69 265.4 324 48.8
C08p44760 Brassica napus HOM05D003936 ORTHO05D004747 7.6e-69 265.0 299 51.5
PSO210G7358 Papaver somniferum HOM05D003936 ORTHO05D004747 3.8e-68 262.7 305 52.5
AT1G15810 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 6.5e-68 261.9 313 50.8
PSO478G0782 Papaver somniferum HOM05D003936 ORTHO05D004747 8.5e-68 261.5 330 49.7
PSO782G4560 Papaver somniferum HOM05D003936 ORTHO05D004747 3.2e-67 259.6 332 49.4
Hund00590 Selenicereus undatus HOM05D003936 ORTHO05D004747 3.2e-67 259.6 319 51.4
RcHm_v2.0_Chr4g0407691 Rosa chinensis HOM05D003936 ORTHO05D004747 5.5e-67 258.8 300 53.3
AL2G40830 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 7.2e-67 258.5 316 49.7
COL.COLO4_11826 Corchorus olitorius HOM05D003936 ORTHO05D004747 7.2e-67 258.5 481 38.0
Lj2A141T58 Lonicera japonica HOM05D003936 ORTHO05D004747 3.6e-66 256.1 308 51.6
Sc10g0006130 Simmondsia chinensis HOM05D003936 ORTHO05D004747 3.6e-66 256.1 310 51.3
Aqoxy7G03521 Aquilegia oxysepala HOM05D003936 ORTHO05D004747 4.6e-66 255.8 310 50.0
BcaC07g41479 Brassica carinata HOM05D003936 ORTHO05D004747 6.7e-65 251.9 294 50.7
HPP92_027846 Vanilla planifolia HOM05D003936 ORTHO05D004747 1.1e-64 251.1 305 50.2
HanXRQChr16g0500031 Helianthus annuus HOM05D003936 ORTHO05D004747 1.5e-64 250.8 213 62.4
arahy.Tifrunner.gnm1.ann1.9YJ9LX Arachis hypogaea HOM05D003936 ORTHO05D004747 1.9e-64 250.4 273 53.5
Os02g0803200 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 1.9e-64 250.4 312 49.0
AUR62016607 Chenopodium quinoa HOM05D003936 ORTHO05D004747 2.5e-64 250.0 324 49.7
Glyma.07G026400 Glycine max HOM05D003936 ORTHO05D004747 3.3e-64 249.6 238 57.1
Lsat_1_v5_gn_8_9281 Lactuca sativa HOM05D003936 ORTHO05D004747 9.7e-64 248.1 215 63.3
FAN05G0608 Fragaria x ananassa HOM05D003936 ORTHO05D004747 2.2e-63 246.9 304 52.0
GSVIVG01026722001 Vitis vinifera HOM05D003936 ORTHO05D004747 1.4e-62 244.2 135 87.4
arahy.Tifrunner.gnm1.ann1.ZV9XE5 Arachis hypogaea HOM05D003936 ORTHO05D004747 3.1e-62 243.0 273 52.0
Lj9A496T67 Lonicera japonica HOM05D003936 ORTHO05D004747 4.1e-62 242.7 311 51.1
DCAR_016286 Daucus carota HOM05D003936 ORTHO05D004747 9.1e-62 241.5 301 47.5
Manes.04G106400 Manihot esculenta HOM05D003936 ORTHO05D004747 1.5e-61 240.7 259 54.1
SGA_v2.0_scaffold5G02746 Striga asiatica HOM05D003936 ORTHO05D004747 1.5e-61 240.7 319 46.7
ECA232G5052 Erigeron canadensis HOM05D003936 ORTHO05D004747 5.0e-60 235.7 211 63.5
RcHm_v2.0_Chr6g0246971 Rosa chinensis HOM05D003936 ORTHO05D004747 1.8e-57 227.3 282 51.4
MD09G1223400 Malus domestica HOM05D003936 ORTHO05D004747 6.7e-57 225.3 205 59.0
Zm00001eb192140 Zea mays HOM05D003936 ORTHO05D004747 2.8e-55 219.9 332 44.6
Ah.02g127880 Amaranthus hybridus HOM05D003936 ORTHO05D004747 4.8e-55 219.2 352 42.9
Dinv30485 Davidia involucrata HOM05D003936 ORTHO05D004747 6.3e-55 218.8 252 52.8
SHI11258 Sapria himalayana HOM05D003936 ORTHO05D004747 1.5e-53 214.2 320 43.1
SalBow6G1756 Salvia bowleyana HOM05D003936 ORTHO05D004747 2.6e-53 213.4 390 39.0
SalBow6G6295 Salvia bowleyana HOM05D003936 ORTHO05D004747 2.6e-53 213.4 390 39.0
AL1040U10010 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 2.1e-50 203.8 115 87.8
Os06g0176150 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 8.8e-49 198.4 117 81.2
Os06g0177250 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 8.8e-49 198.4 117 81.2
QL08p064442 Quercus lobata HOM05D003936 ORTHO05D004747 2.9e-44 183.3 101 87.1
RcHm_v2.0_Chr2g0145231 Rosa chinensis HOM05D003936 ORTHO05D004747 3.0e-41 173.3 116 79.3
CDE09G1350 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 1.8e-38 164.1 97 83.5
SEGI_32691 Sequoiadendron giganteum HOM05D003936 ORTHO05D004747 4.5e-37 159.5 287 40.8
Pp3c1_21620 Physcomitrium patens HOM05D003936 ORTHO05D004747 3.6e-34 149.8 123 54.5
Mapoly0065s0028 Marchantia polymorpha HOM05D003936 ORTHO05D004747 4.7e-34 149.4 130 56.9
GSVIVG01026738001 Vitis vinifera HOM05D003936 ORTHO05D004747 5.2e-33 146.0 76 93.4
SMO164G0146 Selaginella moellendorffii HOM05D003936 ORTHO05D004747 2.1e-26 124.0 204 40.2
BcaB05g25239 Brassica carinata HOM05D003936 ORTHO05D004747 1.8e-25 120.9 66 89.4
Zm00001eb320360 Zea mays HOM05D003936 ORTHO05D004747 3.4e-24 116.7 183 41.5
PSO832G3729 Papaver somniferum HOM05D003936 ORTHO05D004747 1.7e-20 104.4 66 78.8
AagrBONN_evm.TU.Sc2ySwM_117.728 Anthoceros agrestis HOM05D003936 ORTHO05D004747 1.6e-18 97.8 94 52.1
Nitab4.5_0009138g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 3.6e-18 96.7 63 74.6
CBR_g28520 Chara braunii HOM05D003936 ORTHO05D004747 1.8e-17 94.4 106 48.1
QL08p064447 Quercus lobata HOM05D003936 ORTHO05D004747 4.0e-17 93.2 156 42.3
MCO16G694 Micromonas commoda HOM05D003936 ORTHO05D003028 8.9e-17 92.0 105 45.7
CiPaw.02G160600 Carya illinoinensis HOM05D003936 ORTHO05D004747 1.2e-16 91.7 161 42.9
RcHm_v2.0_Chr2g0171141 Rosa chinensis HOM05D003936 ORTHO05D004747 3.4e-16 90.1 55 83.6
AagrBONN_evm.TU.Sc2ySwM_368.3374 Anthoceros agrestis HOM05D003936 ORTHO05D004747 2.9e-15 87.0 92 53.3
Ca_25898_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 1.3e-12 78.2 117 48.7
Nitab4.5_0012293g0040 Nicotiana tabacum HOM05D003936 ORTHO05D004747 3.9e-12 76.6 37 91.9
Cfa001908 Carpinus fangiana HOM05D003936 ORTHO05D004747 1.2e-10 71.6 163 33.7
Cre17.g731250 Chlamydomonas reinhardtii HOM05D003936 ORTHO05D004747 4.0e-09 66.6 105 36.2
EL10Ac7g16358 Beta vulgaris HOM05D003327 ORTHO05D004535 3.4e-08 63.5 52 57.7
Glyma.08G216000 Glycine max HOM05D003936 ORTHO05D004747 3.4e-08 63.5 37 70.3
PRCOL_00001607 Prasinoderma coloniale HOM05D003936 ORTHO05D004747 4.4e-08 63.2 104 36.5
CDE09G0364 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 7.5e-08 62.4 156 34.0
SMO172G0122 Selaginella moellendorffii HOM05D003936 ORTHO05D004747 2.9e-07 60.5 67 50.7
Ca_29111_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 8.3e-07 58.9 66 50.0
Cre06.g264300 Chlamydomonas reinhardtii HOM05D003936 ORTHO05D004747 5.4e-06 56.2 83 39.8


User provided reference genes

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