Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g006670.3 Solanum lycopersicum HOM05D005391 ORTHO05D006694 3.3e-75 285.4 199 100.0
Sopen08g002620 Solanum pennellii HOM05D005391 ORTHO05D006694 7.4e-75 284.3 199 99.0
PGSC0003DMG400026284 Solanum tuberosum HOM05D005391 ORTHO05D006694 1.4e-73 280.0 199 83.4
Nitab4.5_0000264g0120 Nicotiana tabacum HOM05D005391 ORTHO05D006694 1.6e-61 240.0 198 73.7
Peaxi162Scf00045g01932 Petunia axillaris HOM05D005391 ORTHO05D006694 1.6e-61 240.0 196 71.4
Dinv23158 Davidia involucrata HOM05D005391 ORTHO05D006694 6.3e-50 201.4 200 62.5
Nitab4.5_0001362g0010 Nicotiana tabacum HOM05D005391 ORTHO05D006694 1.3e-47 193.7 201 73.1
vmacro16727 Vaccinium macrocarpon HOM05D005391 ORTHO05D006694 8.5e-47 191.0 200 56.0
MSTRG.25825 Avicennia marina HOM05D005391 ORTHO05D006694 2.3e-44 183.0 220 69.1
Cc08_g07550 Coffea canephora HOM05D005391 ORTHO05D006694 4.0e-44 182.2 210 54.8
Nn3g16438 Nelumbo nucifera HOM05D005391 ORTHO05D006694 8.8e-44 181.0 200 51.5
Oeu009657.1 Olea europaea HOM05D005391 ORTHO05D006694 4.4e-43 178.7 207 59.4
Manes.14G050400 Manihot esculenta HOM05D005391 ORTHO05D006694 2.2e-42 176.4 211 52.6
Actinidia36818 Actinidia chinensis HOM05D005391 ORTHO05D006694 2.8e-42 176.0 190 54.7
MBI07_g28244_MAGBIO Magnolia biondii HOM05D005391 ORTHO05D006694 3.7e-42 175.6 198 52.5
Migut.E01449 Erythranthe guttata HOM05D005391 ORTHO05D006694 1.8e-41 173.3 194 59.8
unitig_32.g10935 Utricularia gibba HOM05D005391 ORTHO05D006694 1.8e-41 173.3 219 53.4
CSS0043065 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 2.4e-41 172.9 201 51.7
TWI23G0649 Tripterygium wilfordii HOM05D005391 ORTHO05D006694 2.4e-41 172.9 211 51.7
TAR371G0831 Trochodendron aralioides HOM05D005391 ORTHO05D006694 3.1e-41 172.6 192 54.7
Thecc.03G130500 Theobroma cacao HOM05D005391 ORTHO05D006694 5.3e-41 171.8 198 55.1
TAR629G0488 Trochodendron aralioides HOM05D005391 ORTHO05D006694 5.3e-41 171.8 199 52.3
Lj5A95T81 Lonicera japonica HOM05D005391 ORTHO05D006694 9.1e-41 171.0 220 56.4
MD15G1005900 Malus domestica HOM05D005391 ORTHO05D006694 9.1e-41 171.0 206 50.5
PSO478G3696 Papaver somniferum HOM05D005391 ORTHO05D006694 9.1e-41 171.0 193 51.8
PSO017G3900 Papaver somniferum HOM05D005391 ORTHO05D006694 1.6e-40 170.2 193 51.3
Nn4g22289 Nelumbo nucifera HOM05D005391 ORTHO05D006694 2.7e-40 169.5 194 52.1
Rhsim12G0176000 Rhododendron simsii HOM05D005391 ORTHO05D006694 2.7e-40 169.5 203 51.2
SGA_v2.0_scaffold169G38603 Striga asiatica HOM05D005391 ORTHO05D006694 4.5e-40 168.7 213 57.3
COL.COLO4_28143 Corchorus olitorius HOM05D005391 ORTHO05D006694 1.3e-39 167.2 198 50.5
DCAR_016386 Daucus carota HOM05D005391 ORTHO05D006694 1.3e-39 167.2 199 50.3
Sed0002904 Sechium edule HOM05D005391 ORTHO05D006694 1.7e-39 166.8 202 49.5
TWI14G1436 Tripterygium wilfordii HOM05D005391 ORTHO05D006694 2.2e-39 166.4 191 56.0
CSS0003205 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 3.8e-39 165.6 200 57.5
CSS0033680 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 3.8e-39 165.6 200 57.5
CANSAT80G1472 Cannabis sativa HOM05D005391 ORTHO05D006694 6.5e-39 164.9 204 48.5
CiPaw.11G006200 Carya illinoinensis HOM05D005391 ORTHO05D006694 6.5e-39 164.9 203 52.2
Lsat_1_v5_gn_4_81240 Lactuca sativa HOM05D005391 ORTHO05D006694 8.5e-39 164.5 195 50.8
Prupe.1G358600 Prunus persica HOM05D005391 ORTHO05D006694 1.1e-38 164.1 204 49.0
CiPaw.12G044000 Carya illinoinensis HOM05D005391 ORTHO05D006694 1.5e-38 163.7 202 50.0
Ciclev10032864m.g Citrus clementina HOM05D005391 ORTHO05D006694 1.9e-38 163.3 197 55.3
Haze_07152 Corylus avellana HOM05D005391 ORTHO05D006694 1.9e-38 163.3 202 68.8
Atru.chr6.1808 Acer truncatum HOM05D005391 ORTHO05D006694 4.2e-38 162.2 201 48.8
Cpa.g.sc13.100 Carica papaya HOM05D005391 ORTHO05D006694 4.2e-38 162.2 208 49.5
Gohir.A07G050600 Gossypium hirsutum HOM05D005391 ORTHO05D006694 4.2e-38 162.2 206 50.0
SalBow8G3527 Salvia bowleyana HOM05D005391 ORTHO05D006694 5.5e-38 161.8 194 69.1
Cfa018784 Carpinus fangiana HOM05D005391 ORTHO05D006694 9.4e-38 161.0 202 67.8
CsaV3_1G000500 Cucumis sativus L. HOM05D005391 ORTHO05D006694 9.4e-38 161.0 201 52.7
Gohir.D07G055100 Gossypium hirsutum HOM05D005391 ORTHO05D006694 1.2e-37 160.6 198 50.0
Gorai.001G058300 Gossypium raimondii HOM05D005391 ORTHO05D006694 1.2e-37 160.6 198 50.0
MD08G1006700 Malus domestica HOM05D005391 ORTHO05D006694 1.6e-37 160.2 209 47.4
Potri.015G097800 Populus trichocarpa HOM05D005391 ORTHO05D006694 2.1e-37 159.8 189 48.7
AUR62002017 Chenopodium quinoa HOM05D005391 ORTHO05D006694 2.7e-37 159.5 198 48.5
MELO3C026202.2 Cucumis melo HOM05D005391 ORTHO05D006694 4.7e-37 158.7 201 49.8
Duzib205G0229 Durio zibethinus HOM05D005391 ORTHO05D006694 1.0e-36 157.5 195 61.5
Sabra12G0072400 Salix brachista HOM05D005391 ORTHO05D006694 1.0e-36 157.5 189 53.4
Potri.012G099200 Populus trichocarpa HOM05D005391 ORTHO05D006694 1.4e-36 157.1 189 53.4
FvH4_2g37750 Fragaria vesca HOM05D005391 ORTHO05D006694 2.3e-36 156.4 200 47.0
AUR62003784 Chenopodium quinoa HOM05D005391 ORTHO05D006694 3.0e-36 156.0 187 48.7
Ah.03g143420 Amaranthus hybridus HOM05D005391 ORTHO05D006694 6.8e-36 154.8 198 47.0
arahy.Tifrunner.gnm1.ann1.S11VKX Arachis hypogaea HOM05D005391 ORTHO05D006694 8.8e-36 154.5 192 65.1
EL10Ac6g15093 Beta vulgaris HOM05D005391 ORTHO05D006694 1.2e-35 154.1 198 48.0
TPR.G14215 Trifolium pratense HOM05D005391 ORTHO05D006694 1.5e-35 153.7 201 47.3
GSVIVG01008565001 Vitis vinifera HOM05D005391 ORTHO05D006694 2.0e-35 153.3 201 54.7
ECA232G1626 Erigeron canadensis HOM05D005391 ORTHO05D006694 4.4e-35 152.1 191 47.6
Hund08624 Selenicereus undatus HOM05D005391 ORTHO05D006694 4.4e-35 152.1 198 47.0
Glyma.04G196600 Glycine max HOM05D005391 ORTHO05D006694 5.7e-35 151.8 195 51.8
CARHR277330 Cardamine hirsuta HOM05D005391 ORTHO05D006694 9.8e-35 151.0 188 48.9
Ca_16053_v3 Cicer arietinum L. HOM05D005391 ORTHO05D006694 9.8e-35 151.0 197 48.2
Lj1g0005006 Lotus japonicus HOM05D005391 ORTHO05D006694 9.8e-35 151.0 201 47.3
RcHm_v2.0_Chr6g0303761 Rosa chinensis HOM05D005391 ORTHO05D006694 9.8e-35 151.0 198 60.1
CDE04G2377 Ceratophyllum demersum HOM05D005391 ORTHO05D006694 2.8e-34 149.4 198 47.0
Medtr3g099130 Medicago truncatula HOM05D005391 ORTHO05D006694 2.8e-34 149.4 197 48.2
Phvul.009G165600 Phaseolus vulgaris HOM05D005391 ORTHO05D006694 2.8e-34 149.4 195 59.5
FAN27G0224 Fragaria x ananassa HOM05D005391 ORTHO05D006694 3.7e-34 149.1 200 46.0
THA.LOC104798944 Tarenaya hassleriana HOM05D005391 ORTHO05D006694 4.8e-34 148.7 205 48.8
FAN20G0870 Fragaria x ananassa HOM05D005391 ORTHO05D006694 6.3e-34 148.3 200 45.0
Sp2g26560 Schrenkiella parvula HOM05D005391 ORTHO05D006694 6.3e-34 148.3 193 47.2
Psat5g051960 Pisum sativum HOM05D005391 ORTHO05D006694 8.3e-34 147.9 197 46.2
BcaB02g09758 Brassica carinata HOM05D005391 ORTHO05D006694 1.1e-33 147.5 188 61.2
arahy.Tifrunner.gnm1.ann1.3A01UJ Arachis hypogaea HOM05D005391 ORTHO05D006694 1.4e-33 147.1 200 62.5
C03p62960 Brassica napus HOM05D005391 ORTHO05D006694 1.4e-33 147.1 188 52.1
Aa31LG1G18560 Aethionema arabicum HOM05D005391 ORTHO05D006694 1.8e-33 146.7 188 51.6
BolC3t18550H Brassica oleracea HOM05D005391 ORTHO05D006694 1.8e-33 146.7 188 52.1
FAN15G0439 Fragaria x ananassa HOM05D005391 ORTHO05D006694 1.8e-33 146.7 200 45.0
Glyma.06G169200 Glycine max HOM05D005391 ORTHO05D006694 1.8e-33 146.7 189 49.7
Sabra15G0118500 Salix brachista HOM05D005391 ORTHO05D006694 2.4e-33 146.4 218 43.1
A06p30110 Brassica napus HOM05D005391 ORTHO05D006694 4.1e-33 145.6 188 47.3
BraA06t25962Z Brassica rapa HOM05D005391 ORTHO05D006694 4.1e-33 145.6 188 47.3
Thhalv10004987m.g Eutrema salsugineum HOM05D005391 ORTHO05D006694 1.2e-32 144.1 188 53.2
Lalb_Chr23g0273681 Lupinus albus HOM05D005391 ORTHO05D006694 1.2e-32 144.1 195 47.7
CDE10G0912 Ceratophyllum demersum HOM05D005391 ORTHO05D006694 1.6e-32 143.7 188 45.7
AL8G40540 Arabidopsis lyrata HOM05D005391 ORTHO05D006694 3.5e-32 142.5 188 52.7
AT5G63480 Arabidopsis thaliana HOM05D005391 ORTHO05D006694 7.7e-32 141.4 188 67.0
QL10p002677 Quercus lobata HOM05D005391 ORTHO05D006694 1.0e-31 141.0 199 58.3
ATR0171G017 Amborella trichopoda HOM05D005391 ORTHO05D006694 2.9e-31 139.4 193 44.6
Carub.0008s2418 Capsella rubella HOM05D005391 ORTHO05D006694 2.9e-31 139.4 188 56.4
BcaB04g19920 Brassica carinata HOM05D005391 ORTHO05D006694 1.5e-30 137.1 188 44.7
A09p08280 Brassica napus HOM05D005391 ORTHO05D006694 1.5e-30 137.1 194 45.4
Aqoxy3G00618 Aquilegia oxysepala HOM05D005391 ORTHO05D006694 1.9e-30 136.7 197 61.4
BraA09t36478Z Brassica rapa HOM05D005391 ORTHO05D006694 2.5e-30 136.3 193 44.6
FAN26G2573 Fragaria x ananassa HOM05D005391 ORTHO05D006694 4.2e-30 135.6 197 42.6
arahy.Tifrunner.gnm1.ann1.CP8X4X Arachis hypogaea HOM05D005391 ORTHO05D006694 7.2e-30 134.8 233 54.5
arahy.Tifrunner.gnm1.ann1.HT4698 Arachis hypogaea HOM05D005391 ORTHO05D006694 1.2e-29 134.0 234 53.4
Aqoxy3G01572 Aquilegia oxysepala HOM05D005391 ORTHO05D006694 4.7e-29 132.1 191 44.5
ClCG06G017970 Citrullus lanatus HOM05D005391 ORTHO05D006694 1.4e-28 130.6 256 39.5
SEGI_01116 Sequoiadendron giganteum HOM05D005391 ORTHO05D006694 4.0e-28 129.0 194 42.8
Zm00001eb421130 Zea mays HOM05D005391 ORTHO05D006694 1.2e-27 127.5 186 43.0
BolC9t53848H Brassica oleracea HOM05D005391 ORTHO05D006694 7.5e-27 124.8 182 48.9
Actinidia08882 Actinidia chinensis HOM05D005391 ORTHO05D006694 3.1e-25 119.4 157 48.4
BcaC04g23332 Brassica carinata HOM05D005391 ORTHO05D006694 7.0e-25 118.2 182 47.8
C09p09360 Brassica napus HOM05D005391 ORTHO05D006694 7.0e-25 118.2 182 47.8
Oeu040668.1 Olea europaea HOM05D005391 ORTHO05D006694 2.0e-24 116.7 174 44.8
HanXRQChr09g0273301 Helianthus annuus HOM05D005391 ORTHO05D006694 1.1e-22 110.9 162 42.6
Ah.07g204620 Amaranthus hybridus HOM05D005391 ORTHO05D006694 1.9e-22 110.2 166 44.0
Sc04g0000550 Simmondsia chinensis HOM05D005391 ORTHO05D006694 5.6e-22 108.6 157 46.5
HPP92_023119 Vanilla planifolia HOM05D005391 ORTHO05D006694 1.8e-20 103.6 188 38.3
CSS0010891 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 3.0e-20 102.8 135 45.9
Mapoly0007s0225 Marchantia polymorpha HOM05D005391 ORTHO05D006694 1.7e-18 97.1 184 35.9
Pp3c7_3280 Physcomitrium patens HOM05D005391 ORTHO05D006694 8.3e-18 94.7 190 34.2
Ca_01190_v3 Cicer arietinum L. HOM05D005391 ORTHO05D006694 1.1e-17 94.4 105 50.5
FAN23G2258 Fragaria x ananassa HOM05D005391 ORTHO05D006694 1.2e-16 90.9 166 38.6
DCAR_021623 Daucus carota HOM05D005391 ORTHO05D006694 5.9e-16 88.6 189 34.9
VMungo1309G0665 Vigna mungo HOM05D005391 ORTHO05D006694 5.9e-16 88.6 129 58.9
AagrBONN_evm.TU.Sc2ySwM_369.268 Anthoceros agrestis HOM05D005391 ORTHO05D006694 1.6e-13 80.5 183 35.5
SMO364G0653 Selaginella moellendorffii HOM05D005391 ORTHO05D006694 2.1e-13 80.1 180 30.0
CSS0049043 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 4.0e-12 75.9 67 64.2
FAN23G0903 Fragaria x ananassa HOM05D005391 ORTHO05D006694 4.0e-12 75.9 195 32.8
Os04g0388601 Oryza sativa ssp. japonica HOM05D005391 ORTHO05D006694 5.2e-12 75.5 162 56.2
Gohir.1Z049409 Gossypium hirsutum HOM05D005391 ORTHO05D006694 3.7e-10 69.3 132 40.9
Zm00001eb085410 Zea mays HOM05D005391 ORTHO05D006694 3.2e-09 66.2 122 54.9
SEGI_13536 Sequoiadendron giganteum HOM05D005391 ORTHO05D006694 5.4e-09 65.5 173 31.2


User provided reference genes

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