Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g006610.3 Solanum lycopersicum HOM05D005612 ORTHO05D007014 6.5e-224 780.4 392 100.0
Sopen08g002560 Solanum pennellii HOM05D005612 ORTHO05D007014 1.1e-220 769.6 392 98.7
CAN.G530.1 Capsicum annuum HOM05D005612 ORTHO05D007014 7.9e-206 720.3 395 92.2
Nitab4.5_0000264g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 5.7e-204 714.1 394 90.6
Peaxi162Scf00045g01936 Petunia axillaris HOM05D005612 ORTHO05D007014 2.0e-188 662.5 389 85.1
PGSC0003DMG400026305 Solanum tuberosum HOM05D005612 ORTHO05D007014 8.6e-176 620.5 321 97.5
Nitab4.5_0005450g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 2.5e-175 619.0 394 81.7
CSS0047351 Camellia sinensis var. sinensis HOM05D005612 ORTHO05D007014 2.8e-166 589.0 390 74.9
Dinv43696 Davidia involucrata HOM05D005612 ORTHO05D007014 1.1e-162 577.0 390 75.1
Actinidia12252 Actinidia chinensis HOM05D005612 ORTHO05D007014 9.2e-162 573.9 389 72.5
Hma1.2p1_2025F.1_g311480 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 6.0e-161 571.2 390 72.8
vmacro13411 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 3.3e-159 565.5 391 72.4
GSVIVG01027677001 Vitis vinifera HOM05D005612 ORTHO05D007014 3.3e-159 565.5 390 72.1
Hma1.2p1_0511F.1_g169190 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 5.6e-159 564.7 390 72.1
MSTRG.17178 Avicennia marina HOM05D005612 ORTHO05D007014 7.1e-154 547.7 392 68.9
DCAR_008555 Daucus carota HOM05D005612 ORTHO05D007014 9.2e-154 547.4 390 69.0
Nn4g26368 Nelumbo nucifera HOM05D005612 ORTHO05D007014 1.2e-153 547.0 390 70.0
Migut.B01623 Erythranthe guttata HOM05D005612 ORTHO05D007014 1.3e-152 543.5 392 67.1
QL08p052678 Quercus lobata HOM05D005612 ORTHO05D007014 6.6e-152 541.2 391 68.8
Oeu055499.1 Olea europaea HOM05D005612 ORTHO05D007014 3.3e-151 538.9 380 68.7
TAR375G1134 Trochodendron aralioides HOM05D005612 ORTHO05D007014 7.3e-151 537.7 390 68.2
Cc02_g24020 Coffea canephora HOM05D005612 ORTHO05D007014 1.2e-150 537.0 390 69.5
TWI14G1300 Tripterygium wilfordii HOM05D005612 ORTHO05D007014 1.2e-150 537.0 394 66.5
Atru.chr2.2479 Acer truncatum HOM05D005612 ORTHO05D007014 3.4e-148 528.9 393 66.7
Manes.01G266600 Manihot esculenta HOM05D005612 ORTHO05D007014 1.1e-146 523.9 390 67.7
Potri.014G068500 Populus trichocarpa HOM05D005612 ORTHO05D007014 4.1e-146 521.9 386 67.9
Ciclev10010228m.g Citrus clementina HOM05D005612 ORTHO05D007014 9.2e-146 520.8 388 67.3
Aqoxy1G04104 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 3.0e-144 515.8 388 64.7
Eucgr.E01443 Eucalyptus grandis HOM05D005612 ORTHO05D007014 3.0e-144 515.8 390 65.9
Sed0014004 Sechium edule HOM05D005612 ORTHO05D007014 3.0e-144 515.8 390 65.6
ECA236G2759 Erigeron canadensis HOM05D005612 ORTHO05D007014 8.6e-144 514.2 392 63.8
CsaV3_3G009760 Cucumis sativus L. HOM05D005612 ORTHO05D007014 2.5e-143 512.7 390 65.4
Gorai.004G162600 Gossypium raimondii HOM05D005612 ORTHO05D007014 2.5e-143 512.7 408 63.2
Thecc.01G378200 Theobroma cacao HOM05D005612 ORTHO05D007014 3.3e-143 512.3 408 63.2
Aqoxy3G02061 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 4.3e-143 511.9 388 64.4
Prupe.6G155400 Prunus persica HOM05D005612 ORTHO05D007014 1.2e-142 510.4 393 66.2
Duzib138G1608 Durio zibethinus HOM05D005612 ORTHO05D007014 2.4e-141 506.1 407 63.9
Cpa.g.sc18.108 Carica papaya HOM05D005612 ORTHO05D007014 6.8e-141 504.6 369 66.7
ClCG05G002330 Citrullus lanatus HOM05D005612 ORTHO05D007014 8.9e-141 504.2 405 62.7
THA.LOC104827614 Tarenaya hassleriana HOM05D005612 ORTHO05D007014 8.9e-141 504.2 391 64.5
Phvul.011G138100 Phaseolus vulgaris HOM05D005612 ORTHO05D007014 1.5e-140 503.4 388 64.9
Gohir.A08G135500 Gossypium hirsutum HOM05D005612 ORTHO05D007014 2.0e-140 503.1 408 62.3
PSO384G4101 Papaver somniferum HOM05D005612 ORTHO05D007014 2.0e-140 503.1 386 65.3
Lj3g0004128 Lotus japonicus HOM05D005612 ORTHO05D007014 2.6e-140 502.7 390 64.9
PSO339G2081 Papaver somniferum HOM05D005612 ORTHO05D007014 3.4e-140 502.3 386 65.0
Carub.0004s2795 Capsella rubella HOM05D005612 ORTHO05D007014 4.4e-140 501.9 388 64.4
HanXRQChr04g0122751 Helianthus annuus HOM05D005612 ORTHO05D007014 9.9e-140 500.7 392 64.0
RcHm_v2.0_Chr3g0497141 Rosa chinensis HOM05D005612 ORTHO05D007014 9.9e-140 500.7 390 65.9
Manes.05G046700 Manihot esculenta HOM05D005612 ORTHO05D007014 1.7e-139 500.0 392 65.3
FAN28G0581 Fragaria x ananassa HOM05D005612 ORTHO05D007014 2.2e-139 499.6 390 64.9
TPR.G17234 Trifolium pratense HOM05D005612 ORTHO05D007014 2.2e-139 499.6 389 65.3
CANSAT01G1400 Cannabis sativa HOM05D005612 ORTHO05D007014 3.8e-139 498.8 389 65.3
CiPaw.01G263000 Carya illinoinensis HOM05D005612 ORTHO05D007014 4.9e-139 498.4 390 65.6
Lalb_Chr03g0039601 Lupinus albus HOM05D005612 ORTHO05D007014 6.4e-139 498.0 388 63.1
PGR042G0232 Punica granatum HOM05D005612 ORTHO05D007014 6.4e-139 498.0 383 65.5
Haze_16797 Corylus avellana HOM05D005612 ORTHO05D007014 8.4e-139 497.7 364 69.2
FAN28G2973 Fragaria x ananassa HOM05D005612 ORTHO05D007014 1.1e-138 497.3 390 64.9
FvH4_1g28100 Fragaria vesca HOM05D005612 ORTHO05D007014 2.4e-138 496.1 390 65.4
Lj7C530T5 Lonicera japonica HOM05D005612 ORTHO05D007014 2.4e-138 496.1 422 61.6
Cfa015219 Carpinus fangiana HOM05D005612 ORTHO05D007014 3.2e-138 495.7 366 68.9
vmacro21020 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 4.2e-138 495.4 369 68.0
FAN23G2738 Fragaria x ananassa HOM05D005612 ORTHO05D007014 1.2e-137 493.8 390 64.6
Glyma.12G134000 Glycine max HOM05D005612 ORTHO05D007014 3.5e-137 492.3 391 64.2
Psat0s2995g0040 Pisum sativum HOM05D005612 ORTHO05D007014 3.5e-137 492.3 388 64.4
Thhalv10001485m.g Eutrema salsugineum HOM05D005612 ORTHO05D007014 4.6e-137 491.9 389 63.5
AL4G44420 Arabidopsis lyrata HOM05D005612 ORTHO05D007014 7.8e-137 491.1 390 64.6
COL.COLO4_12531 Corchorus olitorius HOM05D005612 ORTHO05D007014 1.0e-136 490.7 366 66.1
AT2G45320 Arabidopsis thaliana HOM05D005612 ORTHO05D007014 2.3e-136 489.6 389 63.5
FAN26G0204 Fragaria x ananassa HOM05D005612 ORTHO05D007014 2.3e-136 489.6 412 61.4
Lsat_1_v5_gn_7_9741 Lactuca sativa HOM05D005612 ORTHO05D007014 5.1e-136 488.4 380 63.7
Sp4g27340 Schrenkiella parvula HOM05D005612 ORTHO05D007014 8.7e-136 487.6 389 63.2
EL10Ac4g10240 Beta vulgaris HOM05D005612 ORTHO05D007014 7.3e-135 484.6 392 63.0
Hund07502 Selenicereus undatus HOM05D005612 ORTHO05D007014 2.1e-134 483.0 417 60.2
MD00G1094900 Malus domestica HOM05D005612 ORTHO05D007014 2.8e-134 482.6 402 62.7
Glyma.06G270700 Glycine max HOM05D005612 ORTHO05D007014 3.6e-134 482.3 392 63.8
C03p30020 Brassica napus HOM05D005612 ORTHO05D007014 4.8e-134 481.9 391 61.9
Lalb_Chr01g0021461 Lupinus albus HOM05D005612 ORTHO05D007014 8.1e-134 481.1 388 61.9
Gohir.D08G156300 Gossypium hirsutum HOM05D005612 ORTHO05D007014 1.1e-133 480.7 394 62.4
unitig_749.g14376 Utricularia gibba HOM05D005612 ORTHO05D007014 1.4e-133 480.3 392 61.7
Medtr4g053430 Medicago truncatula HOM05D005612 ORTHO05D007014 1.8e-133 479.9 354 68.6
SalBow5G3218 Salvia bowleyana HOM05D005612 ORTHO05D007014 1.8e-133 479.9 367 64.9
arahy.Tifrunner.gnm1.ann1.Q1YE57 Arachis hypogaea HOM05D005612 ORTHO05D007014 2.4e-133 479.6 391 61.9
arahy.Tifrunner.gnm1.ann1.39QM8U Arachis hypogaea HOM05D005612 ORTHO05D007014 4.0e-133 478.8 384 62.8
BcaB01g03271 Brassica carinata HOM05D005612 ORTHO05D007014 5.3e-133 478.4 389 61.7
AUR62000130 Chenopodium quinoa HOM05D005612 ORTHO05D007014 6.9e-133 478.0 401 61.3
BraA03t11718Z Brassica rapa HOM05D005612 ORTHO05D007014 1.2e-132 477.2 392 62.0
A03p25180 Brassica napus HOM05D005612 ORTHO05D007014 5.8e-132 474.9 392 61.7
Lsat_1_v5_gn_8_86120 Lactuca sativa HOM05D005612 ORTHO05D007014 1.3e-131 473.8 365 63.8
BcaC01g05140 Brassica carinata HOM05D005612 ORTHO05D007014 1.4e-130 470.3 392 61.5
BolC3t15349H Brassica oleracea HOM05D005612 ORTHO05D007014 1.4e-130 470.3 392 61.5
Sabra14G0048200 Salix brachista HOM05D005612 ORTHO05D007014 4.3e-127 458.8 376 62.8
Ca_19396_v3 Cicer arietinum L. HOM05D005612 ORTHO05D007014 1.7e-123 446.8 373 61.4
Ah.04g161950 Amaranthus hybridus HOM05D004275 ORTHO05D005720 2.1e-118 429.9 413 55.7
MELO3C006197.2 Cucumis melo HOM05D005612 ORTHO05D007014 4.5e-116 422.2 335 63.3
Sc16g0011470 Simmondsia chinensis HOM05D005612 ORTHO05D007014 4.9e-115 418.7 348 62.1
Zm00001eb195050 Zea mays HOM05D005612 ORTHO05D007014 3.9e-112 409.1 378 57.1
CDE07G1659 Ceratophyllum demersum HOM05D005612 ORTHO05D007014 2.8e-110 402.9 350 57.1
AUR62019310 Chenopodium quinoa HOM05D005612 ORTHO05D007014 3.2e-106 389.4 265 71.3
VMungo1127G0102 Vigna mungo HOM05D005612 ORTHO05D007014 2.6e-100 369.8 250 72.4
unitig_76.g29085 Utricularia gibba HOM05D005612 ORTHO05D007014 1.1e-98 364.4 392 50.8
ATR1100G025 Amborella trichopoda HOM05D005612 ORTHO05D007014 6.7e-96 355.1 305 59.3
MBI14_g08144_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 1.3e-91 340.9 265 64.5
CARHR140520 Cardamine hirsuta HOM05D005612 ORTHO05D007014 1.4e-85 320.9 203 76.4
Aa31LG1G26830 Aethionema arabicum HOM05D005612 ORTHO05D007014 2.6e-84 316.6 193 78.2
ATR0686G054 Amborella trichopoda HOM05D005612 ORTHO05D007014 1.5e-82 310.8 259 60.2
CiPaw.09G176500 Carya illinoinensis HOM05D005612 ORTHO05D007014 7.0e-77 292.0 326 50.6
SGA_v2.0_scaffold153G37000 Striga asiatica HOM05D005612 ORTHO05D007014 2.1e-73 280.4 224 63.8
Duzib138G0844 Durio zibethinus HOM05D005612 ORTHO05D007014 6.8e-72 275.4 165 78.8
SMO119G0175 Selaginella moellendorffii HOM05D005612 ORTHO05D007014 2.8e-70 270.0 279 48.7
Dinv32369 Davidia involucrata HOM05D005612 ORTHO05D007014 3.1e-69 266.5 219 65.3
Zm00001eb012290 Zea mays HOM05D005612 ORTHO05D007014 1.3e-62 244.6 188 61.2
Zm00001eb249030 Zea mays HOM05D005612 ORTHO05D007014 4.9e-62 242.7 201 58.7
FAN19G0199 Fragaria x ananassa HOM05D005612 ORTHO05D007014 6.8e-56 222.2 132 78.8
AagrBONN_evm.TU.Sc2ySwM_117.669 Anthoceros agrestis HOM05D005612 ORTHO05D007014 3.7e-54 216.5 216 49.5
Pp3c17_6010 Physcomitrium patens HOM05D005612 ORTHO05D007014 1.5e-50 204.5 349 36.1
MSTRG.28297 Avicennia marina HOM05D005612 ORTHO05D007014 2.0e-47 194.1 115 79.1
CARHR140530 Cardamine hirsuta HOM05D005612 ORTHO05D007014 2.3e-43 180.6 194 48.5
Medtr8g102045 Medicago truncatula HOM05D005612 ORTHO05D007014 1.1e-40 171.8 135 65.2
Zm00001eb385140 Zea mays HOM05D005612 ORTHO05D007014 4.1e-37 159.8 133 57.9
Zm00001eb084960 Zea mays HOM05D005612 ORTHO05D007014 5.4e-37 159.5 133 57.9
Medtr8g102040 Medicago truncatula HOM05D005612 ORTHO05D007014 1.6e-36 157.9 133 60.2
Oeu011925.1 Olea europaea HOM05D005612 ORTHO05D007014 3.1e-32 143.7 200 42.0
Rhsim01G0149000 Rhododendron simsii HOM05D005612 ORTHO05D007014 7.6e-31 139.0 243 36.2
Gohir.A08G135200 Gossypium hirsutum HOM05D005612 ORTHO05D007014 9.9e-31 138.7 210 42.4
SEGI_33395 Sequoiadendron giganteum HOM05D005612 ORTHO05D007014 7.1e-29 132.5 173 45.7
Zm00001eb270960 Zea mays HOM05D005612 ORTHO05D002685 9.2e-29 132.1 84 71.4
Haze_18350 Corylus avellana HOM05D005612 ORTHO05D007014 3.4e-23 113.6 72 75.0
TAR626G0370 Trochodendron aralioides HOM05D005612 ORTHO05D007014 9.9e-23 112.1 63 81.0
Gohir.A08G135550 Gossypium hirsutum HOM05D005612 ORTHO05D007014 1.1e-21 108.6 186 41.4
MBI14_g08143_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 1.9e-21 107.8 110 53.6
Zm00001eb321930 Zea mays HOM05D005612 ORTHO05D007014 7.1e-21 105.9 97 54.6
Glyma.20G076400 Glycine max HOM05D005612 ORTHO05D007014 2.1e-20 104.4 75 62.7
Os06g0571300 Oryza sativa ssp. japonica HOM05D005612 ORTHO05D007014 2.0e-15 87.8 92 55.4
MD15G1255900 Malus domestica HOM05D001392 ORTHO05D036605 7.9e-12 75.9 47 80.9
Medtr8g102042 Medicago truncatula HOM05D005612 ORTHO05D007014 7.4e-10 69.3 62 53.2
Lalb_Chr08g0243441 Lupinus albus HOM05D005612 ORTHO05D007014 2.8e-09 67.4 47 72.3
Dinv39084 Davidia involucrata HOM05D005612 ORTHO05D007014 4.0e-08 63.5 105 34.3


User provided reference genes

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