Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g006580.3 Solanum lycopersicum HOM05D007824 ORTHO05D009875 1.0e-20 102.4 52 100.0
PGSC0003DMG402026306 Solanum tuberosum HOM05D007824 ORTHO05D009875 6.7e-20 99.8 52 98.1
Nitab4.5_0007473g0010 Nicotiana tabacum HOM05D007824 ORTHO05D009875 1.4e-17 92.0 52 88.5
CSS0038513 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 2.4e-17 91.3 52 84.6
Migut.A00397 Erythranthe guttata HOM05D007824 ORTHO05D009875 3.8e-15 84.0 52 78.8
CiPaw.08G004000 Carya illinoinensis HOM05D007824 ORTHO05D009875 1.5e-14 82.0 53 77.4
ClCG05G016050 Citrullus lanatus HOM05D007824 ORTHO05D009875 4.2e-14 80.5 52 73.1
Migut.E01438 Erythranthe guttata HOM05D007824 ORTHO05D009875 4.2e-14 80.5 52 71.2
Oeu030057.1 Olea europaea HOM05D007824 ORTHO05D009875 5.5e-14 80.1 52 75.0
Sed0025799 Sechium edule HOM05D007824 ORTHO05D009875 7.2e-14 79.7 52 71.2
CSS0035617 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 1.2e-13 79.0 52 78.8
Sed0001567 Sechium edule HOM05D007824 ORTHO05D009875 1.2e-13 79.0 52 71.2
Prupe.1G398400 Prunus persica HOM05D007824 ORTHO05D009875 1.6e-13 78.6 54 75.9
CSS0008945 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 2.1e-13 78.2 52 78.8
Eucgr.C04026 Eucalyptus grandis HOM05D007824 ORTHO05D009875 2.1e-13 78.2 52 76.9
RcHm_v2.0_Chr6g0299081 Rosa chinensis HOM05D007824 ORTHO05D009875 2.1e-13 78.2 54 74.1
Sed0013399 Sechium edule HOM05D007824 ORTHO05D009875 3.6e-13 77.4 52 69.2
ClCG08G013840 Citrullus lanatus HOM05D007824 ORTHO05D009875 4.7e-13 77.0 52 65.4
MELO3C016940.2 Cucumis melo HOM05D007824 ORTHO05D009875 4.7e-13 77.0 52 69.2
CSS0021115 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 6.1e-13 76.6 52 75.0
CSS0044029 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 8.0e-13 76.3 52 76.9
CSS0041715 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 1.0e-12 75.9 51 76.5
CiPaw.07G233700 Carya illinoinensis HOM05D007824 ORTHO05D009875 1.0e-12 75.9 53 75.5
Nn5g27701 Nelumbo nucifera HOM05D007824 ORTHO05D009875 1.0e-12 75.9 52 71.2
Ciclev10010135m.g Citrus clementina HOM05D007824 ORTHO05D009875 2.3e-12 74.7 52 71.2
Sc23g0006310 Simmondsia chinensis HOM05D007824 ORTHO05D009875 3.0e-12 74.3 52 75.0
Phvul.009G085600 Phaseolus vulgaris HOM05D007824 ORTHO05D009875 4.0e-12 73.9 50 70.0
Oeu006856.1 Olea europaea HOM05D007824 ORTHO05D009875 6.8e-12 73.2 49 73.5
Sed0025864 Sechium edule HOM05D007824 ORTHO05D009875 6.8e-12 73.2 52 65.4
Thecc.09G011700 Theobroma cacao HOM05D007824 ORTHO05D009875 2.0e-11 71.6 49 67.3
Glyma.04G059451 Glycine max HOM05D007824 ORTHO05D009875 3.4e-11 70.9 50 64.0
Manes.03G006300 Manihot esculenta HOM05D007824 ORTHO05D009875 4.4e-11 70.5 43 76.7
Duzib168G1878 Durio zibethinus HOM05D007824 ORTHO05D009875 7.5e-11 69.7 49 63.3
MD08G1050300 Malus domestica HOM05D007824 ORTHO05D009875 7.5e-11 69.7 54 66.7
THA.LOC104803330 Tarenaya hassleriana HOM05D007824 ORTHO05D009875 7.5e-11 69.7 48 62.5
Potri.018G014101 Populus trichocarpa HOM05D007824 ORTHO05D009875 9.8e-11 69.3 43 72.1
Glyma.06G059900 Glycine max HOM05D007824 ORTHO05D009875 1.3e-10 68.9 53 64.2
Lalb_Chr08g0244541 Lupinus albus HOM05D007824 ORTHO05D009875 1.7e-10 68.6 50 62.0
Gohir.A13G178900 Gossypium hirsutum HOM05D007824 ORTHO05D009875 2.8e-10 67.8 43 72.1
Gohir.D13G187000 Gossypium hirsutum HOM05D007824 ORTHO05D009875 2.8e-10 67.8 43 72.1
MD15G1044500 Malus domestica HOM05D007824 ORTHO05D009875 2.8e-10 67.8 51 66.7
unitig_46.g18221 Utricularia gibba HOM05D007824 ORTHO05D009875 2.8e-10 67.8 52 57.7
Atru.chr7.2598 Acer truncatum HOM05D007824 ORTHO05D009875 6.3e-10 66.6 55 61.8
Gohir.A05G062100 Gossypium hirsutum HOM05D007824 ORTHO05D009875 6.3e-10 66.6 49 59.2
Zm00001eb221680 Zea mays HOM05D007824 ORTHO05D009875 6.3e-10 66.6 45 75.6
Gohir.D05G064600 Gossypium hirsutum HOM05D007824 ORTHO05D009875 1.1e-09 65.9 49 59.2
Gorai.009G065300 Gossypium raimondii HOM05D007824 ORTHO05D009875 1.4e-09 65.5 49 59.2
Aa31LG3G16350 Aethionema arabicum HOM05D007824 ORTHO05D009875 7.0e-09 63.2 48 60.4
Glyma.17G221200 Glycine max HOM05D007824 ORTHO05D009875 7.0e-09 63.2 47 59.6
Os10g0478900 Oryza sativa ssp. japonica HOM05D007824 ORTHO05D009875 7.0e-09 63.2 44 70.5
CARHR202570 Cardamine hirsuta HOM05D007824 ORTHO05D009875 9.1e-09 62.8 48 58.3
Thhalv10015471m.g Eutrema salsugineum HOM05D007824 ORTHO05D009875 9.1e-09 62.8 48 58.3
arahy.Tifrunner.gnm1.ann1.58R7DF Arachis hypogaea HOM05D007824 ORTHO05D009875 1.2e-08 62.4 36 83.3
arahy.Tifrunner.gnm1.ann1.A82CWH Arachis hypogaea HOM05D007824 ORTHO05D009875 1.2e-08 62.4 36 83.3
Lj5g0022212 Lotus japonicus HOM05D007824 ORTHO05D009875 1.2e-08 62.4 47 66.0
Medtr3g105765 Medicago truncatula HOM05D007824 ORTHO05D009875 1.6e-08 62.0 53 58.5
Medtr1g013350 Medicago truncatula HOM05D007824 ORTHO05D009875 2.0e-08 61.6 47 66.0
Solyc08g068930.3 Solanum lycopersicum HOM05D007824 ORTHO05D009875 5.9e-08 60.1 39 76.9
Glyma.14G104600 Glycine max HOM05D007824 ORTHO05D009875 1.0e-07 59.3 44 59.1
CSS0018794 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 6.5e-07 56.6 34 82.4
AT5G10745 Arabidopsis thaliana HOM05D007824 ORTHO05D009875 8.5e-07 56.2 50 56.0
DCAR_000681 Daucus carota HOM05D007824 ORTHO05D009875 8.5e-07 56.2 53 62.3
BcaB01g06276 Brassica carinata HOM05D007824 ORTHO05D009875 1.1e-06 55.8 50 54.0
AL6G21300 Arabidopsis lyrata HOM05D007824 ORTHO05D009875 1.5e-06 55.5 50 56.0
BcaB01g05502 Brassica carinata HOM05D007824 ORTHO05D009875 1.5e-06 55.5 50 54.0
A03p04740 Brassica napus HOM05D007824 ORTHO05D009875 1.5e-06 55.5 50 54.0
C03p05450 Brassica napus HOM05D007824 ORTHO05D009875 1.5e-06 55.5 50 54.0
BraA03t09814Z Brassica rapa HOM05D007824 ORTHO05D009875 1.5e-06 55.5 50 54.0
Psat6g024640 Pisum sativum HOM05D007824 ORTHO05D009875 1.5e-06 55.5 42 66.7
Carub.0006s0922 Capsella rubella HOM05D007824 ORTHO05D009875 4.2e-06 53.9 45 60.0
Thhalv10005256m.g Eutrema salsugineum HOM05D007824 ORTHO05D009875 4.2e-06 53.9 39 64.1
Mapoly0056s0140 Marchantia polymorpha HOM05D007824 ORTHO05D009875 4.2e-06 53.9 49 57.1
TPR.G38894 Trifolium pratense HOM05D007824 ORTHO05D009875 4.2e-06 53.9 44 63.6
Aa31LG11G4150 Aethionema arabicum HOM05D007824 ORTHO05D009875 9.5e-06 52.8 39 64.1
HanXRQChr10g0282061 Helianthus annuus HOM05D046567 ORTHO05D048208 9.5e-06 52.8 45 55.6


User provided reference genes

Program Settings