Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g006050.2 Solanum lycopersicum HOM05D004577 ORTHO05D005062 3.9e-80 301.6 172 100.0
Sopen08g002020 Solanum pennellii HOM05D004577 ORTHO05D005062 1.2e-62 243.4 157 93.0
PGSC0003DMG400014846 Solanum tuberosum HOM05D004577 ORTHO05D005062 2.2e-59 232.6 161 89.4
PGSC0003DMG400016552 Solanum tuberosum HOM05D004577 ORTHO05D005062 3.6e-54 215.3 161 83.2
Solyc04g051850.3 Solanum lycopersicum HOM05D004577 ORTHO05D005062 2.4e-53 212.6 161 82.0
Sopen04g023180 Solanum pennellii HOM05D004577 ORTHO05D005062 2.4e-53 212.6 161 82.0
Nitab4.5_0000904g0010 Nicotiana tabacum HOM05D004577 ORTHO05D005062 5.5e-42 174.9 161 74.5
Nitab4.5_0005865g0040 Nicotiana tabacum HOM05D004577 ORTHO05D005062 7.9e-41 171.0 161 73.3
Migut.M01633 Erythranthe guttata HOM05D004577 ORTHO05D005062 3.1e-37 159.1 161 65.2
Peaxi162Scf00359g00123 Petunia axillaris HOM05D004577 ORTHO05D005062 2.6e-36 156.0 120 85.8
MSTRG.14503 Avicennia marina HOM05D004577 ORTHO05D005062 3.4e-36 155.6 160 64.4
Dinv40884 Davidia involucrata HOM05D002691 ORTHO05D003304 3.4e-36 155.6 159 66.7
CSS0013049 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 5.8e-36 154.8 152 69.1
Cc10_g02580 Coffea canephora HOM05D004577 ORTHO05D005062 2.5e-34 149.4 161 64.0
Nitab4.5_0006854g0030 Nicotiana tabacum HOM05D004577 ORTHO05D005062 3.2e-34 149.1 176 63.1
MSTRG.13031 Avicennia marina HOM05D004577 ORTHO05D005062 5.5e-34 148.3 151 64.2
CSS0048553 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 5.5e-34 148.3 179 60.9
Oeu021394.1 Olea europaea HOM05D004577 ORTHO05D005062 5.5e-34 148.3 162 63.6
CSS0030856 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 1.6e-33 146.7 144 70.1
unitig_578.g16418 Utricularia gibba HOM05D004577 ORTHO05D005062 2.5e-31 139.4 158 62.7
DCAR_015198 Daucus carota HOM05D004577 ORTHO05D005062 1.3e-30 137.1 149 63.1
Nitab4.5_0000329g0070 Nicotiana tabacum HOM05D004577 ORTHO05D005062 1.8e-29 133.3 161 59.0
TAR627G0729 Trochodendron aralioides HOM05D004577 ORTHO05D005062 9.0e-29 131.0 159 62.9
Sc22g0002120 Simmondsia chinensis HOM05D004577 ORTHO05D005062 1.5e-28 130.2 158 60.8
TAR629G1725 Trochodendron aralioides HOM05D004577 ORTHO05D005062 1.5e-28 130.2 141 63.8
CSS0050514 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 4.5e-28 128.6 152 61.8
DCAR_019165 Daucus carota HOM05D004577 ORTHO05D005062 1.0e-27 127.5 164 60.4
Lsat_1_v5_gn_9_89100 Lactuca sativa HOM05D004577 ORTHO05D005062 1.3e-27 127.1 154 64.3
Migut.H01738 Erythranthe guttata HOM05D004577 ORTHO05D005062 6.5e-27 124.8 161 60.2
MBI15_g38535_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 6.5e-27 124.8 117 71.8
SalBow1G5164 Salvia bowleyana HOM05D004577 ORTHO05D005062 2.7e-25 119.4 193 50.3
Nn1g08321 Nelumbo nucifera HOM05D004577 ORTHO05D005062 1.3e-24 117.1 104 73.1
Potri.011G163900 Populus trichocarpa HOM05D004577 ORTHO05D005062 2.3e-24 116.3 159 57.9
SGA_v2.0_scaffold8G04425 Striga asiatica HOM05D004577 ORTHO05D005062 3.0e-24 115.9 158 55.7
HanXRQChr13g0408461 Helianthus annuus HOM05D004577 ORTHO05D005062 3.9e-24 115.5 154 57.8
unitig_8.g4693 Utricularia gibba HOM05D002703 ORTHO05D002921 3.9e-24 115.5 152 59.9
QL08p002692 Quercus lobata HOM05D004577 ORTHO05D005062 6.7e-24 114.8 121 67.8
Lj6g0018119 Lotus japonicus HOM05D004577 ORTHO05D005062 1.5e-23 113.6 161 55.9
Glyma.18G074400 Glycine max HOM05D004577 ORTHO05D005062 1.9e-23 113.2 162 58.6
AT1G56200 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 2.5e-23 112.8 136 64.0
CDE02G2114 Ceratophyllum demersum HOM05D000091 ORTHO05D002116 2.5e-23 112.8 100 78.0
HanXRQChr03g0080381 Helianthus annuus HOM05D004577 ORTHO05D005062 2.5e-23 112.8 99 78.8
Eucgr.E00269 Eucalyptus grandis HOM05D004577 ORTHO05D005062 3.3e-23 112.5 177 49.7
ECA240G1529 Erigeron canadensis HOM05D000491 ORTHO05D000359 5.7e-23 111.7 123 65.9
Carub.0001s4488 Capsella rubella HOM05D004577 ORTHO05D005062 9.7e-23 110.9 136 63.2
Cfa021890 Carpinus fangiana HOM05D004577 ORTHO05D005062 9.7e-23 110.9 121 66.1
CDE01G0461 Ceratophyllum demersum HOM05D004577 ORTHO05D005062 9.7e-23 110.9 100 78.0
AL1G64510 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 1.3e-22 110.5 122 67.2
MD11G1037000 Malus domestica HOM05D004577 ORTHO05D005062 1.3e-22 110.5 172 50.0
PSO675G7851 Papaver somniferum HOM05D004577 ORTHO05D005062 2.2e-22 109.8 157 58.0
PGR004G1013 Punica granatum HOM05D004577 ORTHO05D005062 2.2e-22 109.8 174 54.0
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 2.8e-22 109.4 121 66.1
Thhalv10011850m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 2.8e-22 109.4 101 76.2
PSO541G2111 Papaver somniferum HOM05D004577 ORTHO05D005062 3.7e-22 109.0 97 80.4
Lalb_Chr16g0391221 Lupinus albus HOM05D004577 ORTHO05D005062 4.8e-22 108.6 161 57.1
MELO3C014068.2 Cucumis melo HOM05D004577 ORTHO05D005062 8.2e-22 107.8 128 64.1
THA.LOC104826365 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 8.2e-22 107.8 129 64.3
MBI07_g28243_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 1.1e-21 107.5 120 58.3
CARHR045970 Cardamine hirsuta HOM05D004577 ORTHO05D005062 1.8e-21 106.7 134 63.4
CiPaw.11G206900 Carya illinoinensis HOM05D004577 ORTHO05D005062 1.8e-21 106.7 142 59.9
Nitab4.5_0010352g0020 Nicotiana tabacum HOM05D004577 ORTHO05D005062 2.4e-21 106.3 175 51.4
Phvul.006G059254 Phaseolus vulgaris HOM05D004577 ORTHO05D005062 2.4e-21 106.3 162 56.2
Sed0027009 Sechium edule HOM05D004577 ORTHO05D005062 2.4e-21 106.3 99 77.8
HPP92_020499 Vanilla planifolia HOM05D004577 ORTHO05D005062 2.4e-21 106.3 100 77.0
ClCG10G003880 Citrullus lanatus HOM05D004577 ORTHO05D005062 3.1e-21 105.9 128 64.1
ClCG10G004020 Citrullus lanatus HOM05D004577 ORTHO05D005062 3.1e-21 105.9 128 64.1
ClCG10G004040 Citrullus lanatus HOM05D004577 ORTHO05D005062 3.1e-21 105.9 128 64.1
MD03G1035300 Malus domestica HOM05D004577 ORTHO05D005062 3.1e-21 105.9 169 49.1
Thecc.07G153300 Theobroma cacao HOM05D004577 ORTHO05D005062 5.3e-21 105.1 128 59.4
unitig_0.g986 Utricularia gibba HOM05D004577 ORTHO05D005062 5.3e-21 105.1 150 52.7
CiPaw.12G140600 Carya illinoinensis HOM05D004577 ORTHO05D005062 6.9e-21 104.8 114 69.3
Sp1g41840 Schrenkiella parvula HOM05D004577 ORTHO05D005062 9.1e-21 104.4 97 77.3
Aqoxy5G01161 Aquilegia oxysepala HOM05D004577 ORTHO05D005062 1.2e-20 104.0 99 77.8
Glyma.08G332600 Glycine max HOM05D004577 ORTHO05D005062 1.2e-20 104.0 161 55.9
Hma1.2p1_0193F.1_g083910 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 1.2e-20 104.0 208 47.6
CsaV3_3G003860 Cucumis sativus L. HOM05D004577 ORTHO05D005062 1.5e-20 103.6 128 64.1
BolC4t23212H Brassica oleracea HOM05D004577 ORTHO05D005062 2.0e-20 103.2 134 63.4
Manes.01G021500 Manihot esculenta HOM05D004577 ORTHO05D005062 2.6e-20 102.8 187 44.9
Prupe.6G028300 Prunus persica HOM05D004577 ORTHO05D005062 2.6e-20 102.8 174 51.1
VMungo0540G1151 Vigna mungo HOM05D004577 ORTHO05D005062 2.6e-20 102.8 168 55.4
EL10Ac7g17857 Beta vulgaris HOM05D004577 ORTHO05D005062 3.4e-20 102.4 116 69.0
Ca_12454_v3 Cicer arietinum L. HOM05D004577 ORTHO05D005062 3.4e-20 102.4 145 57.9
RcHm_v2.0_Chr5g0075591 Rosa chinensis HOM05D004577 ORTHO05D005062 4.5e-20 102.1 128 55.5
C04p16620 Brassica napus HOM05D004577 ORTHO05D005062 1.0e-19 100.9 103 73.8
Eucgr.K00372 Eucalyptus grandis HOM05D004577 ORTHO05D005062 1.3e-19 100.5 101 72.3
A05p12690 Brassica napus HOM05D004577 ORTHO05D005062 1.7e-19 100.1 103 73.8
EL10Ac2g03806 Beta vulgaris HOM05D004577 ORTHO05D005062 2.9e-19 99.4 120 65.8
BraA05t20207Z Brassica rapa HOM05D004577 ORTHO05D005062 2.9e-19 99.4 103 73.8
Medtr3g461020 Medicago truncatula HOM05D004577 ORTHO05D005062 2.9e-19 99.4 164 53.0
BcaB02g10507 Brassica carinata HOM05D004577 ORTHO05D005062 5.0e-19 98.6 103 72.8
CANSAT11G1943 Cannabis sativa HOM05D004577 ORTHO05D005062 6.5e-19 98.2 111 65.8
Gohir.D09G118900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 6.5e-19 98.2 106 65.1
Duzib213G0774 Durio zibethinus HOM05D004577 ORTHO05D005062 1.4e-18 97.1 165 47.3
FAN16G3679 Fragaria x ananassa HOM05D004577 ORTHO05D005062 1.4e-18 97.1 128 54.7
Sp1g26310 Schrenkiella parvula HOM05D004577 ORTHO05D005062 3.2e-18 95.9 128 51.6
FAN25G2651 Fragaria x ananassa HOM05D004577 ORTHO05D005062 9.4e-18 94.4 128 53.9
Gohir.A01G038700 Gossypium hirsutum HOM05D004577 ORTHO05D005062 9.4e-18 94.4 106 64.2
Hma1.2p1_3473F.1_g336250 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 9.4e-18 94.4 87 72.4
FvH4_3g42270 Fragaria vesca HOM05D004577 ORTHO05D005062 1.2e-17 94.0 128 53.9
GSVIVG01014742001 Vitis vinifera HOM05D004577 ORTHO05D005062 1.2e-17 94.0 57 78.9
ATR0681G062 Amborella trichopoda HOM05D004577 ORTHO05D005062 2.1e-17 93.2 95 72.6
FAN21G3744 Fragaria x ananassa HOM05D004577 ORTHO05D005062 2.7e-17 92.8 128 53.1
Duzib187G1448 Durio zibethinus HOM05D004577 ORTHO05D005062 1.0e-16 90.9 125 53.6
Psat5g166440 Pisum sativum HOM05D004577 ORTHO05D005062 1.0e-16 90.9 162 52.5
arahy.Tifrunner.gnm1.ann1.DGYJ7N Arachis hypogaea HOM05D004577 ORTHO05D005062 1.4e-16 90.5 103 70.9
arahy.Tifrunner.gnm1.ann1.JWFX0I Arachis hypogaea HOM05D004577 ORTHO05D005062 1.4e-16 90.5 103 70.9
C07p15110 Brassica napus HOM05D004577 ORTHO05D005062 1.4e-16 90.5 95 61.1
BolC7t42015H Brassica oleracea HOM05D004577 ORTHO05D005062 1.4e-16 90.5 95 61.1
Ciclev10009709m.g Citrus clementina HOM05D004577 ORTHO05D005062 2.3e-16 89.7 122 54.1
BcaB03g13825 Brassica carinata HOM05D004577 ORTHO05D005062 3.0e-16 89.4 93 61.3
BcaC01g00196 Brassica carinata HOM05D004577 ORTHO05D005062 3.9e-16 89.0 102 57.8
A07p09910 Brassica napus HOM05D004577 ORTHO05D005062 3.9e-16 89.0 85 67.1
FAN11G1489 Fragaria x ananassa HOM05D004577 ORTHO05D005062 3.9e-16 89.0 126 54.0
TPR.G17935 Trifolium pratense HOM05D004577 ORTHO05D005062 3.9e-16 89.0 160 49.4
C03p76790 Brassica napus HOM05D004577 ORTHO05D005062 5.1e-16 88.6 101 56.4
TWI38G1007 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 6.7e-16 88.2 181 45.3
BcaNung05263 Brassica carinata HOM05D004577 ORTHO05D005062 1.5e-15 87.0 102 56.9
Thhalv10008915m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 1.5e-15 87.0 101 61.4
BolC3t19933H Brassica oleracea HOM05D004577 ORTHO05D005062 2.6e-15 86.3 102 56.9
Manes.05G118000 Manihot esculenta HOM05D004577 ORTHO05D005062 5.7e-15 85.1 131 58.0
AL1G44500 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 7.4e-15 84.7 93 63.4
A08p24420 Brassica napus HOM05D004577 ORTHO05D005062 7.4e-15 84.7 86 62.8
BraA08t34397Z Brassica rapa HOM05D004577 ORTHO05D005062 7.4e-15 84.7 86 62.8
BraA07t28780Z Brassica rapa HOM05D004577 ORTHO05D005062 1.3e-14 84.0 100 58.0
TWI39G1131 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 1.3e-14 84.0 121 55.4
AT1G30475 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 3.7e-14 82.4 85 69.4
THA.LOC104798603 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 1.1e-13 80.9 96 63.5
Carub.0001s2869 Capsella rubella HOM05D004577 ORTHO05D005062 1.8e-13 80.1 119 56.3
Gorai.002G035900 Gossypium raimondii HOM05D004577 ORTHO05D005062 5.3e-13 78.6 140 47.9
HPP92_011618 Vanilla planifolia HOM05D004577 ORTHO05D005062 2.6e-12 76.3 85 64.7
CARHR029880 Cardamine hirsuta HOM05D004577 ORTHO05D005062 7.7e-12 74.7 93 61.3
QL08p055193 Quercus lobata HOM05D004577 ORTHO05D005062 5.0e-11 72.0 98 57.1
Atru.chr1.1924 Acer truncatum HOM05D004577 ORTHO05D005062 5.5e-10 68.6 172 40.1
Cfa001670 Carpinus fangiana HOM05D004577 ORTHO05D005062 5.5e-10 68.6 114 55.3
Dinv26646 Davidia involucrata HOM05D004577 ORTHO05D005062 1.2e-09 67.4 102 51.0
Aa31LG10G50 Aethionema arabicum HOM05D004577 ORTHO05D005062 1.6e-09 67.0 67 70.1
Lalb_Chr03g0040851 Lupinus albus HOM05D011393 ORTHO05D013493 1.6e-09 67.0 130 46.9
Haze_16864 Corylus avellana HOM05D004577 ORTHO05D005062 2.1e-09 66.6 114 54.4
Gohir.D08G183166 Gossypium hirsutum HOM05D004577 ORTHO05D005062 1.4e-08 63.9 64 65.6
Gorai.N025400 Gossypium raimondii HOM05D004577 ORTHO05D005062 1.8e-08 63.5 80 60.0
Gorai.008G093100 Gossypium raimondii HOM05D004577 ORTHO05D005062 3.0e-08 62.8 68 63.2
CiPaw.01G270900 Carya illinoinensis HOM05D004577 ORTHO05D005062 3.9e-08 62.4 125 48.8
Gohir.A04G049900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 3.9e-08 62.4 81 50.6
Gorai.008G148200 Gossypium raimondii HOM05D004577 ORTHO05D005062 6.7e-08 61.6 68 63.2
Atru.chr2.3835 Acer truncatum HOM05D004577 ORTHO05D005062 8.8e-08 61.2 163 39.9
Sabra11G0141000 Salix brachista HOM05D002312 ORTHO05D006455 8.8e-08 61.2 98 42.9
Gorai.009G401800 Gossypium raimondii HOM05D004577 ORTHO05D005062 2.6e-07 59.7 64 59.4
Mapoly0050s0087 Marchantia polymorpha HOM05D034204 ORTHO05D005062 3.3e-07 59.3 115 46.1
Psat2g090480 Pisum sativum HOM05D011393 ORTHO05D013493 7.4e-07 58.2 91 46.2
Peaxi162Scf03243g00002 Petunia axillaris HOM05D004577 ORTHO05D005062 1.3e-06 57.4 110 44.5
Mapoly0031s0147 Marchantia polymorpha HOM05D034204 ORTHO05D005062 3.7e-06 55.8 78 57.7
TPR.G2686 Trifolium pratense HOM05D011393 ORTHO05D013493 3.7e-06 55.8 105 51.4
Aa31LG10G60 Aethionema arabicum HOM05D004577 ORTHO05D005062 8.2e-06 54.7 50 60.0


User provided reference genes

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