Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g005560.3 Solanum lycopersicum HOM05D006098 ORTHO05D007470 3.1e-254 881.3 452 100.0
Sopen08g001580 Solanum pennellii HOM05D006098 ORTHO05D007470 1.2e-245 852.8 452 97.1
PGSC0003DMG400018483 Solanum tuberosum HOM05D006098 ORTHO05D007470 7.4e-240 833.6 455 94.7
CAN.G884.9 Capsicum annuum HOM05D006098 ORTHO05D007470 5.9e-221 770.8 454 87.9
CAN.G884.14 Capsicum annuum HOM05D006098 ORTHO05D007470 4.2e-219 764.6 455 87.5
Peaxi162Scf00045g00071 Petunia axillaris HOM05D006098 ORTHO05D007470 6.3e-215 750.7 440 87.3
Nitab4.5_0011712g0010 Nicotiana tabacum HOM05D006098 ORTHO05D007470 2.3e-212 742.3 454 85.7
Nitab4.5_0001175g0140 Nicotiana tabacum HOM05D006098 ORTHO05D007470 2.8e-207 725.3 500 79.0
Peaxi162Scf00053g00062 Petunia axillaris HOM05D006098 ORTHO05D007470 6.8e-201 704.1 446 81.2
Solyc08g075520.4 Solanum lycopersicum HOM05D006098 ORTHO05D007470 3.2e-198 695.3 454 80.2
Nitab4.5_0000985g0060 Nicotiana tabacum HOM05D006098 ORTHO05D007470 3.5e-197 691.8 447 80.3
CAN.G1026.8 Capsicum annuum HOM05D006098 ORTHO05D007470 1.9e-195 686.0 454 78.6
Nitab4.5_0000898g0120 Nicotiana tabacum HOM05D006098 ORTHO05D007470 3.3e-195 685.3 436 81.9
Nitab4.5_0000030g0370 Nicotiana tabacum HOM05D006098 ORTHO05D007470 1.9e-190 669.5 461 78.1
Cc08_g05440 Coffea canephora HOM05D006098 ORTHO05D007470 1.0e-188 663.7 453 76.6
Oeu042192.1 Olea europaea HOM05D006098 ORTHO05D007470 1.3e-175 620.2 450 73.1
Oeu042191.1 Olea europaea HOM05D006098 ORTHO05D007470 6.4e-175 617.8 450 72.9
Oeu057164.1 Olea europaea HOM05D006098 ORTHO05D007470 8.4e-175 617.5 454 72.7
Oeu046790.1 Olea europaea HOM05D006098 ORTHO05D007470 5.1e-172 608.2 454 71.4
SalBow4G1396 Salvia bowleyana HOM05D006098 ORTHO05D007470 7.3e-171 604.4 445 71.5
Dinv41811 Davidia involucrata HOM05D006098 ORTHO05D007470 9.6e-171 604.0 430 74.2
Actinidia14735 Actinidia chinensis HOM05D006098 ORTHO05D007470 4.9e-167 591.7 432 71.3
Rhsim11G0034900 Rhododendron simsii HOM05D006098 ORTHO05D007470 3.0e-164 582.4 433 70.4
CSS0030969 Camellia sinensis var. sinensis HOM05D006098 ORTHO05D007470 2.8e-162 575.9 421 72.0
Migut.A00537 Erythranthe guttata HOM05D006098 ORTHO05D007470 2.8e-162 575.9 437 70.3
Duzib205G1615 Durio zibethinus HOM05D006098 ORTHO05D007470 2.2e-159 566.2 370 77.6
DCAR_028369 Daucus carota HOM05D006098 ORTHO05D007470 3.8e-159 565.5 385 74.3
vmacro00080 Vaccinium macrocarpon HOM05D006098 ORTHO05D007470 6.4e-159 564.7 432 70.4
Actinidia18166 Actinidia chinensis HOM05D006098 ORTHO05D007470 1.1e-158 563.9 397 73.3
COL.COLO4_10360 Corchorus olitorius HOM05D006098 ORTHO05D007470 4.2e-158 562.0 406 72.9
Sopen08g024170 Solanum pennellii HOM05D006098 ORTHO05D007470 5.4e-158 561.6 374 78.9
Thecc.03G318000 Theobroma cacao HOM05D006098 ORTHO05D007470 5.4e-158 561.6 391 74.4
PGSC0003DMG400016110 Solanum tuberosum HOM05D006098 ORTHO05D007470 7.1e-158 561.2 374 79.1
MSTRG.1762 Avicennia marina HOM05D006098 ORTHO05D007470 2.1e-157 559.7 444 67.8
Actinidia01257 Actinidia chinensis HOM05D006098 ORTHO05D007470 7.9e-157 557.8 416 70.7
SGA_v2.0_scaffold111G31352 Striga asiatica HOM05D006098 ORTHO05D007470 7.9e-157 557.8 417 70.0
GSVIVG01036872001 Vitis vinifera HOM05D006098 ORTHO05D007470 1.3e-156 557.0 405 72.1
Atru.chr8.2640 Acer truncatum HOM05D006098 ORTHO05D007470 2.3e-156 556.2 417 70.7
Rhsim11G0035500 Rhododendron simsii HOM05D006098 ORTHO05D007470 3.3e-155 552.4 485 62.7
Gorai.008G220000 Gossypium raimondii HOM05D006098 ORTHO05D007470 5.6e-155 551.6 391 72.6
Manes.15G184300 Manihot esculenta HOM05D006098 ORTHO05D007470 1.3e-154 550.4 394 72.3
Potri.003G033300 Populus trichocarpa HOM05D006098 ORTHO05D007470 1.6e-154 550.1 378 73.8
Nn1g09368 Nelumbo nucifera HOM05D006098 ORTHO05D007470 2.8e-154 549.3 396 72.5
PGR031G3371 Punica granatum HOM05D006098 ORTHO05D007470 2.8e-154 549.3 433 67.7
ECA246G0847 Erigeron canadensis HOM05D006098 ORTHO05D007470 6.2e-154 548.1 413 70.0
Lsat_1_v5_gn_3_19721 Lactuca sativa HOM05D006098 ORTHO05D007470 6.2e-154 548.1 388 71.6
Dinv37422 Davidia involucrata HOM05D006098 ORTHO05D007470 2.4e-153 546.2 379 75.7
EL10Ac5g12579 Beta vulgaris HOM05D006098 ORTHO05D007470 9.0e-153 544.3 390 71.5
Cpa.g.sc71.63 Carica papaya HOM05D006098 ORTHO05D007470 9.0e-153 544.3 433 66.7
AUR62010477 Chenopodium quinoa HOM05D006098 ORTHO05D007470 7.6e-152 541.2 409 68.5
RcHm_v2.0_Chr6g0304491 Rosa chinensis HOM05D006098 ORTHO05D007470 9.9e-152 540.8 452 65.3
Potri.001G193400 Populus trichocarpa HOM05D006098 ORTHO05D007470 3.8e-151 538.9 378 72.5
Sabra01G0135500 Salix brachista HOM05D006098 ORTHO05D007470 6.4e-151 538.1 382 72.5
TAR629G3250 Trochodendron aralioides HOM05D006098 ORTHO05D007470 8.4e-151 537.7 401 70.3
FAN20G1855 Fragaria x ananassa HOM05D006098 ORTHO05D007470 1.1e-150 537.3 417 67.4
Lj8A337G13 Lonicera japonica HOM05D006098 ORTHO05D007470 2.4e-150 536.2 360 76.7
FvH4_2g37220 Fragaria vesca HOM05D006098 ORTHO05D007470 4.2e-150 535.4 417 67.1
HanXRQChr17g0537231 Helianthus annuus HOM05D006098 ORTHO05D007470 2.7e-149 532.7 377 71.9
Nn7g37397 Nelumbo nucifera HOM05D006098 ORTHO05D007470 2.7e-149 532.7 396 70.2
FAN27G2650 Fragaria x ananassa HOM05D006098 ORTHO05D007470 4.6e-149 531.9 382 70.9
Ah.12g058500 Amaranthus hybridus HOM05D006098 ORTHO05D007470 7.9e-149 531.2 454 62.6
ECA240G1264 Erigeron canadensis HOM05D006098 ORTHO05D007470 2.3e-148 529.6 410 67.3
HanXRQChr03g0081041 Helianthus annuus HOM05D006098 ORTHO05D007470 3.0e-148 529.3 403 69.5
Actinidia32783 Actinidia chinensis HOM05D006098 ORTHO05D007470 3.9e-148 528.9 418 68.9
Gorai.004G178500 Gossypium raimondii HOM05D006098 ORTHO05D007470 1.5e-147 526.9 378 71.7
HanXRQChr13g0411151 Helianthus annuus HOM05D006098 ORTHO05D007470 1.9e-147 526.6 421 67.5
Gohir.A08G150000 Gossypium hirsutum HOM05D006098 ORTHO05D007470 2.5e-147 526.2 370 73.2
Lsat_1_v5_gn_5_57121 Lactuca sativa HOM05D006098 ORTHO05D007470 4.3e-147 525.4 412 68.9
FAN15G0890 Fragaria x ananassa HOM05D006098 ORTHO05D007470 5.6e-147 525.0 385 70.6
AUR62030416 Chenopodium quinoa HOM05D006098 ORTHO05D007470 2.4e-145 519.6 441 62.8
MBI15_g33454_MAGBIO Magnolia biondii HOM05D006098 ORTHO05D007470 1.2e-144 517.3 399 68.7
Duzib068G0239 Durio zibethinus HOM05D006098 ORTHO05D007470 1.0e-143 514.2 415 66.7
THA.LOC104811082 Tarenaya hassleriana HOM05D006098 ORTHO05D007470 1.1e-142 510.8 422 65.6
SalBow8G2199 Salvia bowleyana HOM05D006098 ORTHO05D007470 2.5e-142 509.6 432 63.7
PSO675G7908 Papaver somniferum HOM05D006098 ORTHO05D007470 4.3e-139 498.8 376 68.4
Peaxi162Scf00876g00435 Petunia axillaris HOM05D006098 ORTHO05D007470 9.7e-139 497.7 371 71.2
Sabra03G0019100 Salix brachista HOM05D006098 ORTHO05D007470 1.6e-138 496.9 469 58.6
PSO541G2197 Papaver somniferum HOM05D006098 ORTHO05D007470 2.8e-138 496.1 394 65.7
ATR0568G039 Amborella trichopoda HOM05D006098 ORTHO05D007470 6.9e-137 491.5 393 65.9
Gohir.A12G202400 Gossypium hirsutum HOM05D006098 ORTHO05D007470 1.0e-135 487.6 331 74.3
Gohir.D12G205100 Gossypium hirsutum HOM05D006098 ORTHO05D007470 1.3e-135 487.3 331 74.3
unitig_37.g12121 Utricularia gibba HOM05D006098 ORTHO05D007470 9.1e-129 464.5 367 67.0
CDE01G0744 Ceratophyllum demersum HOM05D006098 ORTHO05D007470 7.2e-126 454.9 405 59.0
AT4G19160 Arabidopsis thaliana HOM05D006098 ORTHO05D007470 2.7e-125 453.0 418 60.0
Carub.0007s2199 Capsella rubella HOM05D006098 ORTHO05D007470 1.0e-124 451.1 370 63.0
AL7G34930 Arabidopsis lyrata HOM05D006098 ORTHO05D007470 5.7e-123 445.3 366 63.4
Aa31LG6G1850 Aethionema arabicum HOM05D006098 ORTHO05D007470 1.3e-122 444.1 445 55.7
SEGI_14227 Sequoiadendron giganteum HOM05D006098 ORTHO05D007470 4.8e-122 442.2 413 56.2
Manes.17G016300 Manihot esculenta HOM05D006098 ORTHO05D007470 6.1e-117 425.2 335 67.2
Sp7g17860 Schrenkiella parvula HOM05D006098 ORTHO05D007470 3.3e-115 419.5 389 59.4
CARHR226030 Cardamine hirsuta HOM05D006098 ORTHO05D007470 3.1e-113 412.9 402 57.2
BcaNung04007 Brassica carinata HOM05D006098 ORTHO05D007470 1.2e-112 411.0 383 59.8
BraA01t01058Z Brassica rapa HOM05D006098 ORTHO05D007470 1.5e-110 404.1 382 59.7
CAN.G947.35 Capsicum annuum HOM05D006098 ORTHO05D007470 1.5e-110 404.1 380 62.6
BcaC09g51434 Brassica carinata HOM05D006098 ORTHO05D007470 1.9e-110 403.7 375 60.0
C01p13160 Brassica napus HOM05D006098 ORTHO05D007470 9.4e-110 401.4 376 60.1
BolC1t01289H Brassica oleracea HOM05D006098 ORTHO05D007470 9.4e-110 401.4 376 60.1
A01p11120 Brassica napus HOM05D006098 ORTHO05D007470 4.7e-109 399.1 395 57.2
Thhalv10025127m.g Eutrema salsugineum HOM05D006098 ORTHO05D007470 2.3e-108 396.7 441 53.3
A08p14200 Brassica napus HOM05D006098 ORTHO05D007470 2.7e-101 373.2 387 55.6
BraA08t33414Z Brassica rapa HOM05D006098 ORTHO05D007470 2.7e-101 373.2 387 55.6
BcaC01g00601 Brassica carinata HOM05D006098 ORTHO05D007470 7.5e-99 365.2 375 55.5
BcaB04g18531 Brassica carinata HOM05D006098 ORTHO05D007470 2.2e-98 363.6 394 53.6
C03p81800 Brassica napus HOM05D006098 ORTHO05D007470 8.3e-98 361.7 370 55.7
BolC3t20457H Brassica oleracea HOM05D006098 ORTHO05D007470 8.3e-98 361.7 370 55.7
MSTRG.13909 Avicennia marina HOM05D006098 ORTHO05D007470 6.3e-90 335.5 324 58.0
FAN27G0800 Fragaria x ananassa HOM05D006098 ORTHO05D007470 2.8e-85 320.1 239 70.7
Gohir.D08G171101 Gossypium hirsutum HOM05D006098 ORTHO05D007470 8.9e-84 315.1 235 68.5
AagrBONN_evm.TU.Sc2ySwM_368.631 Anthoceros agrestis HOM05D006098 ORTHO05D007470 4.9e-66 256.1 362 40.6
HanXRQChr05g0158621 Helianthus annuus HOM05D006098 ORTHO05D007470 1.7e-55 221.1 159 73.0
FvH4_2g37180 Fragaria vesca HOM05D006098 ORTHO05D007470 1.6e-53 214.5 139 77.0
SMO364G0549 Selaginella moellendorffii HOM05D006098 ORTHO05D007470 3.1e-52 210.3 409 36.2
Pp3c12_14620 Physcomitrium patens HOM05D006098 ORTHO05D007470 2.2e-50 204.1 398 33.9
Rhsim11G0035700 Rhododendron simsii HOM05D006098 ORTHO05D007470 8.4e-50 202.2 417 38.6
Oeu015533.1 Olea europaea HOM05D006098 ORTHO05D007470 1.6e-45 188.0 152 61.2
Hund11040 Selenicereus undatus HOM05D006098 ORTHO05D007470 1.2e-43 181.8 451 34.1
HanXRQChr09g0271561 Helianthus annuus HOM05D006098 ORTHO05D007470 1.4e-41 174.9 147 62.6
Oeu042198.1 Olea europaea HOM05D006098 ORTHO05D007470 5.4e-41 172.9 235 47.7
HanXRQChr11g0344761 Helianthus annuus HOM05D006098 ORTHO05D007470 2.7e-40 170.6 126 69.0
Eucgr.D02551 Eucalyptus grandis HOM05D006098 ORTHO05D007470 3.7e-37 160.2 107 73.8
Eucgr.D02550 Eucalyptus grandis HOM05D006098 ORTHO05D007470 4.5e-35 153.3 122 64.8
Peaxi162Scf00527g00718 Petunia axillaris HOM05D006098 ORTHO05D007470 2.3e-31 141.0 195 45.1
Pp3c4_2130 Physcomitrium patens HOM05D006098 ORTHO05D007470 1.6e-24 118.2 308 28.6
RcHm_v2.0_Chr4g0402301 Rosa chinensis HOM05D006098 ORTHO05D007470 1.0e-23 115.5 126 53.2
HanXRQChr11g0344831 Helianthus annuus HOM05D006098 ORTHO05D007470 1.4e-20 105.1 77 67.5
Prupe.1G352900 Prunus persica HOM05D006098 ORTHO05D007470 5.0e-18 96.7 81 63.0
Aa31sc19G30 Aethionema arabicum HOM05D006098 ORTHO05D007470 5.0e-10 70.1 48 68.8
Sc11g0006450 Simmondsia chinensis HOM05D007414 ORTHO05D009482 6.5e-10 69.7 412 25.2
Cre14.g621850 Chlamydomonas reinhardtii HOM05D006098 ORTHO05D007470 2.5e-09 67.8 236 25.8
Cc02_g30210 Coffea canephora HOM05D007414 ORTHO05D009482 1.8e-07 61.6 280 26.4
Sabra01G0020000 Salix brachista HOM05D007414 ORTHO05D009482 2.3e-07 61.2 403 24.1
PSO384G0147 Papaver somniferum HOM05D007414 ORTHO05D009482 8.8e-07 59.3 353 24.4
Aa31LG3G3710 Aethionema arabicum HOM05D006098 ORTHO05D007470 1.1e-06 58.9 58 53.4
PSO339G0457 Papaver somniferum HOM05D007414 ORTHO05D009482 2.0e-06 58.2 411 23.4
AagrBONN_evm.TU.Sc2ySwM_362.1466 Anthoceros agrestis HOM05D007414 ORTHO05D009482 4.4e-06 57.0 412 21.8
Manes.11G006000 Manihot esculenta HOM05D007414 ORTHO05D009482 4.4e-06 57.0 454 23.1
PGSC0003DMG400018334 Solanum tuberosum HOM05D007414 ORTHO05D009482 4.4e-06 57.0 262 26.7
Ah.12g062800 Amaranthus hybridus HOM05D007414 ORTHO05D009482 9.7e-06 55.8 273 23.8
Potri.001G027600 Populus trichocarpa HOM05D007414 ORTHO05D009482 9.7e-06 55.8 395 22.8


User provided reference genes

Program Settings