Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g005520.3 Solanum lycopersicum HOM05D006475 ORTHO05D007969 3.8e-76 288.9 251 100.0
Sopen08g001530 Solanum pennellii HOM05D006475 ORTHO05D007969 1.3e-73 280.4 251 91.2
PGSC0003DMG400018460 Solanum tuberosum HOM05D006475 ORTHO05D007969 1.4e-62 243.8 255 87.5
Nitab4.5_0006541g0010 Nicotiana tabacum HOM05D006475 ORTHO05D007969 7.7e-61 238.0 254 82.7
Nitab4.5_0001175g0100 Nicotiana tabacum HOM05D006475 ORTHO05D007969 1.9e-59 233.4 251 82.5
CAN.G320.16 Capsicum annuum HOM05D006475 ORTHO05D007969 1.1e-54 217.6 253 79.8
Peaxi162Scf00045g00636 Petunia axillaris HOM05D006475 ORTHO05D007969 1.2e-53 214.2 257 79.4
Actinidia14740 Actinidia chinensis HOM05D006475 ORTHO05D007969 1.4e-38 164.1 254 67.3
Lj8A334T74 Lonicera japonica HOM05D006475 ORTHO05D007969 2.9e-36 156.4 256 68.8
Cfa012603 Carpinus fangiana HOM05D006475 ORTHO05D007969 5.0e-36 155.6 249 67.5
Cc08_g05010 Coffea canephora HOM05D006475 ORTHO05D007969 6.5e-36 155.2 260 54.2
CiPaw.12G072000 Carya illinoinensis HOM05D006475 ORTHO05D007969 1.1e-35 154.5 256 66.0
Actinidia18163 Actinidia chinensis HOM05D006475 ORTHO05D007969 1.9e-35 153.7 246 66.7
Potri.001G130500 Populus trichocarpa HOM05D006475 ORTHO05D007969 3.2e-35 152.9 234 67.9
MSTRG.1769 Avicennia marina HOM05D006475 ORTHO05D007969 7.2e-35 151.8 251 66.9
DCAR_028235 Daucus carota HOM05D006475 ORTHO05D007969 7.2e-35 151.8 251 66.5
Rhsim07G0139200 Rhododendron simsii HOM05D006475 ORTHO05D007969 2.1e-34 150.2 252 65.9
Prupe.5G019900 Prunus persica HOM05D006475 ORTHO05D007969 4.7e-34 149.1 247 64.0
AUR62027319 Chenopodium quinoa HOM05D006475 ORTHO05D007969 1.4e-33 147.5 240 63.8
CSS0010448 Camellia sinensis var. sinensis HOM05D006475 ORTHO05D007969 2.3e-33 146.7 253 64.8
Potri.003G103400 Populus trichocarpa HOM05D006475 ORTHO05D007969 4.0e-33 146.0 233 66.1
AUR62007413 Chenopodium quinoa HOM05D006475 ORTHO05D007969 3.4e-32 142.9 240 63.8
Sabra03G0070600 Salix brachista HOM05D006475 ORTHO05D007969 7.5e-32 141.7 233 64.8
Hma1.2p1_0544F.1_g175570 Hydrangea macrophylla HOM05D006475 ORTHO05D007969 1.3e-31 141.0 255 62.4
Ah.12g056010 Amaranthus hybridus HOM05D006475 ORTHO05D007969 1.7e-31 140.6 238 65.5
Nitab4.5_0001175g0110 Nicotiana tabacum HOM05D006475 ORTHO05D007969 1.7e-31 140.6 204 47.1
RcHm_v2.0_Chr7g0213461 Rosa chinensis HOM05D006475 ORTHO05D007969 2.2e-31 140.2 249 65.1
SalBow8G0939 Salvia bowleyana HOM05D006475 ORTHO05D007969 2.8e-31 139.8 238 67.2
Eucgr.D02591 Eucalyptus grandis HOM05D006475 ORTHO05D007969 3.7e-31 139.4 260 64.2
PGR031G1524 Punica granatum HOM05D006475 ORTHO05D007969 4.8e-31 139.0 252 65.1
Haze_08058 Corylus avellana HOM05D006475 ORTHO05D007969 6.3e-31 138.7 261 62.8
Haze_08048 Corylus avellana HOM05D006475 ORTHO05D007969 1.1e-30 137.9 269 61.7
Thecc.01G139200 Theobroma cacao HOM05D006475 ORTHO05D007969 1.1e-30 137.9 235 66.4
Nn3g19252 Nelumbo nucifera HOM05D006475 ORTHO05D007969 7.0e-30 135.2 262 59.9
Manes.17G003100 Manihot esculenta HOM05D006475 ORTHO05D007969 9.1e-30 134.8 247 61.5
FvH4_5g24000 Fragaria vesca HOM05D006475 ORTHO05D007969 5.9e-29 132.1 234 66.7
Nitab4.5_0001175g0040 Nicotiana tabacum HOM05D006475 ORTHO05D007969 5.9e-29 132.1 197 62.9
Aqoxy7G00886 Aquilegia oxysepala HOM05D006475 ORTHO05D007969 1.7e-28 130.6 270 59.6
FAN18G1960 Fragaria x ananassa HOM05D006475 ORTHO05D007969 1.7e-28 130.6 234 66.2
FAN04G1597 Fragaria x ananassa HOM05D006475 ORTHO05D007969 2.9e-28 129.8 235 66.0
FAN13G3229 Fragaria x ananassa HOM05D006475 ORTHO05D007969 2.9e-28 129.8 234 66.2
Lsat_1_v5_gn_6_15221 Lactuca sativa HOM05D006475 ORTHO05D007969 8.5e-28 128.3 237 65.0
ECA233G2922 Erigeron canadensis HOM05D006475 ORTHO05D007969 1.1e-27 127.9 248 51.6
Hund11101 Selenicereus undatus HOM05D006475 ORTHO05D007969 1.1e-27 127.9 249 60.2
FAN08G1612 Fragaria x ananassa HOM05D006475 ORTHO05D007969 2.5e-27 126.7 234 65.8
Lalb_Chr05g0215421 Lupinus albus HOM05D006475 ORTHO05D007969 9.4e-27 124.8 263 59.3
vmacro17427 Vaccinium macrocarpon HOM05D006475 ORTHO05D007969 9.4e-27 124.8 296 57.1
Glyma.01G149900 Glycine max HOM05D006475 ORTHO05D007969 1.2e-26 124.4 251 61.0
Ciclev10005760m.g Citrus clementina HOM05D006475 ORTHO05D007969 1.6e-26 124.0 240 63.8
HanXRQChr08g0226771 Helianthus annuus HOM05D006475 ORTHO05D007969 1.6e-26 124.0 259 61.8
BcaC09g51436 Brassica carinata HOM05D006475 ORTHO05D007969 2.7e-26 123.2 240 62.5
BolC1t01287H Brassica oleracea HOM05D006475 ORTHO05D007969 2.7e-26 123.2 240 62.5
Migut.E01351 Erythranthe guttata HOM05D006475 ORTHO05D007969 2.7e-26 123.2 249 60.2
Aa31LG6G1840 Aethionema arabicum HOM05D006475 ORTHO05D007969 6.1e-26 122.1 245 61.6
CDE11G0189 Ceratophyllum demersum HOM05D006475 ORTHO05D007969 6.1e-26 122.1 252 59.9
SGA_v2.0_scaffold144G35881 Striga asiatica HOM05D006475 ORTHO05D007969 8.0e-26 121.7 237 66.2
unitig_0.g2207 Utricularia gibba HOM05D006475 ORTHO05D007969 8.0e-26 121.7 80 71.2
AL7G34940 Arabidopsis lyrata HOM05D006475 ORTHO05D007969 1.0e-25 121.3 239 63.2
A01p11110 Brassica napus HOM05D006475 ORTHO05D007969 1.0e-25 121.3 240 62.5
BraA01t01057Z Brassica rapa HOM05D006475 ORTHO05D007969 1.0e-25 121.3 240 62.5
Cpa.g.sc137.18 Carica papaya HOM05D006475 ORTHO05D007969 1.0e-25 121.3 236 62.3
Duzib187G1769 Durio zibethinus HOM05D006475 ORTHO05D007969 1.0e-25 121.3 235 64.3
C01p13140 Brassica napus HOM05D006475 ORTHO05D007969 4.0e-25 119.4 69 78.3
THA.LOC104812889 Tarenaya hassleriana HOM05D006475 ORTHO05D007969 4.0e-25 119.4 242 62.4
VMungo1215G2540 Vigna mungo HOM05D006475 ORTHO05D007969 4.0e-25 119.4 255 59.6
arahy.Tifrunner.gnm1.ann1.SLXS5Y Arachis hypogaea HOM05D006475 ORTHO05D007969 5.2e-25 119.0 80 72.5
BcaNung04008 Brassica carinata HOM05D006475 ORTHO05D007969 5.2e-25 119.0 69 78.3
GSVIVG01022797001 Vitis vinifera HOM05D006475 ORTHO05D007969 5.2e-25 119.0 77 70.1
TWI23G0232 Tripterygium wilfordii HOM05D006475 ORTHO05D007969 6.8e-25 118.6 244 58.6
CARHR226020 Cardamine hirsuta HOM05D006475 ORTHO05D007969 2.6e-24 116.7 240 62.5
Carub.0007s2200 Capsella rubella HOM05D006475 ORTHO05D007969 3.4e-24 116.3 239 61.5
AT4G19150 Arabidopsis thaliana HOM05D006475 ORTHO05D007969 4.4e-24 115.9 68 77.9
arahy.Tifrunner.gnm1.ann1.17PB5S Arachis hypogaea HOM05D006475 ORTHO05D007969 9.8e-24 114.8 78 70.5
Medtr5g026800 Medicago truncatula HOM05D006475 ORTHO05D007969 9.8e-24 114.8 264 65.9
PSO717G0136 Papaver somniferum HOM05D006475 ORTHO05D007969 9.8e-24 114.8 293 53.9
HPP92_021118 Vanilla planifolia HOM05D006475 ORTHO05D007969 1.3e-23 114.4 250 58.8
Phvul.002G128300 Phaseolus vulgaris HOM05D006475 ORTHO05D007969 1.7e-23 114.0 257 59.9
arahy.Tifrunner.gnm1.ann1.Y3VSY6 Arachis hypogaea HOM05D006475 ORTHO05D007969 2.2e-23 113.6 81 67.9
Gohir.A05G381700 Gossypium hirsutum HOM05D006475 ORTHO05D007969 2.2e-23 113.6 239 63.2
Gorai.012G037900 Gossypium raimondii HOM05D006475 ORTHO05D007969 2.2e-23 113.6 235 61.7
Sp7g17850 Schrenkiella parvula HOM05D006475 ORTHO05D007969 2.8e-23 113.2 240 61.7
Gohir.D04G033600 Gossypium hirsutum HOM05D006475 ORTHO05D007969 8.3e-23 111.7 235 61.7
Glyma.09G214000 Glycine max HOM05D006475 ORTHO05D007969 1.1e-22 111.3 249 59.8
CANSAT21G0913 Cannabis sativa HOM05D006475 ORTHO05D007969 1.8e-22 110.5 241 60.2
Dinv28010 Davidia involucrata HOM05D006475 ORTHO05D007969 3.1e-22 109.8 72 69.4
arahy.Tifrunner.gnm1.ann1.0NMX6V Arachis hypogaea HOM05D006475 ORTHO05D007969 5.4e-22 109.0 271 55.4
arahy.Tifrunner.gnm1.ann1.CC5QNU Arachis hypogaea HOM05D006475 ORTHO05D007969 5.4e-22 109.0 271 55.4
Oeu042209.2 Olea europaea HOM05D006475 ORTHO05D007969 5.4e-22 109.0 381 44.4
Thhalv10026017m.g Eutrema salsugineum HOM05D006475 ORTHO05D007969 7.0e-22 108.6 240 60.4
Gohir.D03G018700 Gossypium hirsutum HOM05D006475 ORTHO05D007969 7.0e-22 108.6 69 71.0
PSO675G8107 Papaver somniferum HOM05D006475 ORTHO05D007969 7.0e-22 108.6 291 54.6
Ca_25099_v3 Cicer arietinum L. HOM05D006475 ORTHO05D007969 1.6e-21 107.5 256 58.6
EL10Ac5g11923 Beta vulgaris HOM05D006475 ORTHO05D007969 2.0e-21 107.1 238 62.2
TPR.G17268 Trifolium pratense HOM05D006475 ORTHO05D007969 7.7e-21 105.1 79 63.3
Os10g0580700 Oryza sativa ssp. japonica HOM05D006475 ORTHO05D007969 5.0e-20 102.4 68 69.1
Zm00001eb025510 Zea mays HOM05D006475 ORTHO05D007969 3.6e-18 96.3 67 67.2
Psat2g142320 Pisum sativum HOM05D006475 ORTHO05D007969 1.0e-17 94.7 71 63.4
AagrBONN_evm.TU.Sc2ySwM_228.4166 Anthoceros agrestis HOM05D006475 ORTHO05D007969 1.2e-16 91.3 69 59.4
C03p81780 Brassica napus HOM05D006475 ORTHO05D007969 1.2e-16 91.3 69 66.7
SEGI_07236 Sequoiadendron giganteum HOM05D006475 ORTHO05D007969 1.5e-16 90.9 73 58.9
Mapoly0051s0035 Marchantia polymorpha HOM05D006475 ORTHO05D007969 5.7e-16 89.0 68 63.2
QL08p050707 Quercus lobata HOM05D006475 ORTHO05D007969 9.8e-16 88.2 203 66.0
BolC3t20450H Brassica oleracea HOM05D006475 ORTHO05D007969 1.3e-15 87.8 78 59.0
TAR375G0514 Trochodendron aralioides HOM05D006475 ORTHO05D007969 4.1e-14 82.8 205 63.9
CsaV3_3G040920 Cucumis sativus L. HOM05D006475 ORTHO05D007969 5.4e-14 82.4 285 51.2
arahy.Tifrunner.gnm1.ann1.X7UPX8 Arachis hypogaea HOM05D006475 ORTHO05D007969 1.2e-13 81.3 111 45.0
FAN18G4370 Fragaria x ananassa HOM05D006475 ORTHO05D007969 2.0e-13 80.5 200 65.5
ClCG10G015530 Citrullus lanatus HOM05D000058 ORTHO05D000077 8.6e-12 75.1 62 56.5
Nitab4.5_0000532g0060 Nicotiana tabacum HOM05D006475 ORTHO05D007969 3.3e-11 73.2 34 97.1
Lj2g0004034 Lotus japonicus HOM05D006475 ORTHO05D007969 5.6e-11 72.4 266 60.2
arahy.Tifrunner.gnm1.ann1.79230D Arachis hypogaea HOM05D006475 ORTHO05D007969 9.5e-11 71.6 81 51.9
Sed0010053 Sechium edule HOM05D006475 ORTHO05D007969 1.4e-09 67.8 283 49.5
Dinv28011 Davidia involucrata HOM05D006475 ORTHO05D007969 1.2e-08 64.7 103 44.7
Pp3c7_14210 Physcomitrium patens HOM05D006475 ORTHO05D007969 2.0e-08 63.9 51 52.9
CBR_g41202 Chara braunii HOM05D006475 ORTHO05D007969 1.3e-07 61.2 45 57.8
Sc07g0008230 Simmondsia chinensis HOM05D006475 ORTHO05D007969 3.7e-07 59.7 199 56.8
Gohir.D08G138080 Gossypium hirsutum HOM05D006475 ORTHO05D007969 4.9e-07 59.3 36 75.0
Gorai.004G141500 Gossypium raimondii HOM05D006475 ORTHO05D007969 1.9e-06 57.4 36 72.2


User provided reference genes

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