Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g005450.3 Solanum lycopersicum HOM05D004676 ORTHO05D005661 7.1e-83 311.6 328 100.0
Sopen08g001490 Solanum pennellii HOM05D004676 ORTHO05D005661 1.6e-82 310.5 328 99.7
PGSC0003DMG400018489 Solanum tuberosum HOM05D004676 ORTHO05D005661 8.1e-79 298.1 328 97.9
CAN.G137.34 Capsicum annuum HOM05D004676 ORTHO05D005661 7.1e-75 285.0 181 96.1
Nitab4.5_0005880g0060 Nicotiana tabacum HOM05D004676 ORTHO05D005661 8.7e-73 278.1 326 92.9
Peaxi162Scf00045g00052 Petunia axillaris HOM05D004676 ORTHO05D005661 1.1e-70 271.2 328 88.4
Nitab4.5_0001424g0070 Nicotiana tabacum HOM05D004676 ORTHO05D005661 3.1e-70 269.6 328 93.0
Nitab4.5_0003154g0010 Nicotiana tabacum HOM05D004676 ORTHO05D005661 4.5e-69 265.8 181 90.1
Sc21g0005490 Simmondsia chinensis HOM05D004676 ORTHO05D005661 1.0e-60 238.0 181 78.5
Dinv12426 Davidia involucrata HOM05D004676 ORTHO05D005661 5.0e-60 235.7 182 74.7
Potri.001G148000 Populus trichocarpa HOM05D004676 ORTHO05D005661 8.5e-60 235.0 180 77.2
Manes.01G173800 Manihot esculenta HOM05D004676 ORTHO05D005661 7.2e-59 231.9 174 78.7
Hma1.2p1_0418F.1_g149200 Hydrangea macrophylla HOM05D004676 ORTHO05D005661 9.4e-59 231.5 186 76.3
Sabra01G0116300 Salix brachista HOM05D004676 ORTHO05D005661 2.1e-58 230.3 183 68.3
Sabra01G0117800 Salix brachista HOM05D004676 ORTHO05D005661 2.1e-58 230.3 183 68.3
SGA_v2.0_scaffold154G37155 Striga asiatica HOM05D004676 ORTHO05D005661 2.7e-58 229.9 187 74.3
Gohir.A07G098600 Gossypium hirsutum HOM05D004676 ORTHO05D005661 3.0e-57 226.5 182 75.8
Rhsim01G0227600 Rhododendron simsii HOM05D004676 ORTHO05D005661 5.1e-57 225.7 182 77.5
unitig_0.g1557 Utricularia gibba HOM05D004676 ORTHO05D005661 8.8e-57 224.9 176 74.4
Gohir.D07G102900 Gossypium hirsutum HOM05D004676 ORTHO05D005661 1.1e-56 224.6 180 76.1
Gorai.001G110800 Gossypium raimondii HOM05D004676 ORTHO05D005661 1.1e-56 224.6 180 76.1
HanXRQChr01g0009481 Helianthus annuus HOM05D004676 ORTHO05D005661 1.5e-56 224.2 181 72.4
Ah.04g160390 Amaranthus hybridus HOM05D004676 ORTHO05D005661 2.0e-56 223.8 176 76.7
Oeu051436.2 Olea europaea HOM05D004676 ORTHO05D005661 2.0e-56 223.8 181 80.7
Hund18907 Selenicereus undatus HOM05D004676 ORTHO05D005661 3.3e-56 223.0 183 75.4
DCAR_025381 Daucus carota HOM05D004676 ORTHO05D005661 7.4e-56 221.9 187 73.3
Cfa011505 Carpinus fangiana HOM05D004676 ORTHO05D005661 9.7e-56 221.5 178 73.0
SGA_v2.0_scaffold47G17549 Striga asiatica HOM05D004676 ORTHO05D005661 9.7e-56 221.5 182 73.1
CiPaw.13G094200 Carya illinoinensis HOM05D004676 ORTHO05D005661 1.3e-55 221.1 180 73.9
Duzib168G2248 Durio zibethinus HOM05D004676 ORTHO05D005661 1.3e-55 221.1 175 77.7
Lsat_1_v5_gn_5_170600 Lactuca sativa HOM05D004676 ORTHO05D005661 1.3e-55 221.1 136 80.9
Actinidia34405 Actinidia chinensis HOM05D004676 ORTHO05D005661 2.2e-55 220.3 175 66.9
unitig_747.g22032 Utricularia gibba HOM05D004676 ORTHO05D005661 2.2e-55 220.3 182 70.9
Thecc.09G321600 Theobroma cacao HOM05D004676 ORTHO05D005661 2.8e-55 219.9 182 74.7
Cpa.g.sc161.42 Carica papaya HOM05D004676 ORTHO05D005661 3.7e-55 219.5 138 81.2
Lj1P153T22 Lonicera japonica HOM05D004676 ORTHO05D005661 4.8e-55 219.2 177 75.7
Haze_24097 Corylus avellana HOM05D004676 ORTHO05D005661 6.3e-55 218.8 182 73.6
THA.LOC104826325 Tarenaya hassleriana HOM05D004676 ORTHO05D005661 6.3e-55 218.8 181 73.5
Nn1g00565 Nelumbo nucifera HOM05D004676 ORTHO05D005661 8.2e-55 218.4 185 69.7
Cpa.g.sc81.149 Carica papaya HOM05D004676 ORTHO05D005661 1.4e-54 217.6 181 74.6
CiPaw.14G068300 Carya illinoinensis HOM05D004676 ORTHO05D005661 1.4e-54 217.6 137 78.8
Manes.02G133000 Manihot esculenta HOM05D004676 ORTHO05D005661 1.4e-54 217.6 178 65.7
THA.LOC104800662 Tarenaya hassleriana HOM05D004676 ORTHO05D005661 1.4e-54 217.6 175 73.1
Haze_12047 Corylus avellana HOM05D004676 ORTHO05D005661 4.1e-54 216.1 182 75.3
vmacro05212 Vaccinium macrocarpon HOM05D004676 ORTHO05D005661 4.1e-54 216.1 132 82.6
CARHR122080 Cardamine hirsuta HOM05D004676 ORTHO05D005661 5.3e-54 215.7 173 76.3
Actinidia23939 Actinidia chinensis HOM05D004676 ORTHO05D005661 6.9e-54 215.3 176 69.9
AUR62000799 Chenopodium quinoa HOM05D004676 ORTHO05D005661 6.9e-54 215.3 176 75.6
Ciclev10028807m.g Citrus clementina HOM05D004676 ORTHO05D005661 9.1e-54 214.9 186 76.3
TAR633G1457 Trochodendron aralioides HOM05D004676 ORTHO05D005661 9.1e-54 214.9 183 71.6
EL10Ac4g09397 Beta vulgaris HOM05D004676 ORTHO05D005661 1.5e-53 214.2 180 72.8
AUR62005169 Chenopodium quinoa HOM05D004676 ORTHO05D005661 1.5e-53 214.2 176 75.0
Sp4g11720 Schrenkiella parvula HOM05D004676 ORTHO05D005661 2.0e-53 213.8 173 75.1
Aa31LG5G7310 Aethionema arabicum HOM05D004676 ORTHO05D005661 2.6e-53 213.4 177 71.2
PGR119G2251 Punica granatum HOM05D004676 ORTHO05D005661 7.7e-53 211.8 184 74.5
QL09p008735 Quercus lobata HOM05D004676 ORTHO05D005661 7.7e-53 211.8 139 77.7
TWI75G1679 Tripterygium wilfordii HOM05D004676 ORTHO05D005661 7.7e-53 211.8 138 77.5
CsaV3_6G016860 Cucumis sativus L. HOM05D004676 ORTHO05D005661 1.0e-52 211.5 178 74.2
AL4G23440 Arabidopsis lyrata HOM05D004676 ORTHO05D005661 1.7e-52 210.7 173 77.5
Oeu019194.1 Olea europaea HOM05D004676 ORTHO05D005661 2.2e-52 210.3 180 71.1
Atru.chr3.3906 Acer truncatum HOM05D004676 ORTHO05D005661 3.8e-52 209.5 183 68.3
Carub.0004s0990 Capsella rubella HOM05D004676 ORTHO05D005661 5.0e-52 209.1 173 74.0
Eucgr.E01963 Eucalyptus grandis HOM05D004676 ORTHO05D005661 5.0e-52 209.1 183 74.9
AT2G28910 Arabidopsis thaliana HOM05D004676 ORTHO05D005661 6.5e-52 208.8 173 73.4
MELO3C025917.2 Cucumis melo HOM05D004676 ORTHO05D005661 1.1e-51 208.0 176 73.9
Migut.L00671 Erythranthe guttata HOM05D004676 ORTHO05D005661 3.2e-51 206.5 184 70.1
Aqoxy7G03598 Aquilegia oxysepala HOM05D004676 ORTHO05D005661 4.2e-51 206.1 141 74.5
FAN16G2805 Fragaria x ananassa HOM05D004676 ORTHO05D005661 4.2e-51 206.1 184 71.2
Migut.L00698 Erythranthe guttata HOM05D004676 ORTHO05D005661 5.5e-51 205.7 184 69.6
RcHm_v2.0_Chr5g0064541 Rosa chinensis HOM05D004676 ORTHO05D005661 5.5e-51 205.7 182 72.0
ClCG02G020150 Citrullus lanatus HOM05D004676 ORTHO05D005661 7.2e-51 205.3 131 79.4
FvH4_3g36111 Fragaria vesca HOM05D004676 ORTHO05D005661 7.2e-51 205.3 184 71.7
FAN11G0391 Fragaria x ananassa HOM05D004676 ORTHO05D005661 7.2e-51 205.3 184 71.7
TWI79G0464 Tripterygium wilfordii HOM05D004676 ORTHO05D005661 9.4e-51 204.9 174 70.7
BcaC02g11024 Brassica carinata HOM05D004676 ORTHO05D005661 1.6e-50 204.1 173 70.5
C04p22070 Brassica napus HOM05D004676 ORTHO05D005661 1.6e-50 204.1 173 70.5
BolC4t23730H Brassica oleracea HOM05D004676 ORTHO05D005661 1.6e-50 204.1 173 70.5
Thecc.09G321800 Theobroma cacao HOM05D004676 ORTHO05D005661 1.6e-50 204.1 176 70.5
MBI14_g16284_MAGBIO Magnolia biondii HOM05D004676 ORTHO05D005661 2.1e-50 203.8 183 67.8
Sed0011846 Sechium edule HOM05D004676 ORTHO05D005661 2.7e-50 203.4 180 73.3
ECA248G3797 Erigeron canadensis HOM05D004676 ORTHO05D005661 3.6e-50 203.0 179 72.1
FAN25G1996 Fragaria x ananassa HOM05D004676 ORTHO05D005661 3.6e-50 203.0 184 70.7
arahy.Tifrunner.gnm1.ann1.ID2MIU Arachis hypogaea HOM05D004676 ORTHO05D005661 4.7e-50 202.6 184 65.8
Migut.D02100 Erythranthe guttata HOM05D004676 ORTHO05D005661 4.7e-50 202.6 181 68.0
FAN21G2159 Fragaria x ananassa HOM05D004676 ORTHO05D005661 4.7e-50 202.6 186 71.5
SHI01165 Sapria himalayana HOM05D004676 ORTHO05D005661 6.1e-50 202.2 187 62.0
A07p19390 Brassica napus HOM05D004676 ORTHO05D005661 7.9e-50 201.8 173 72.3
DCAR_024536 Daucus carota HOM05D004676 ORTHO05D005661 7.9e-50 201.8 131 74.8
TPR.G18864 Trifolium pratense HOM05D004676 ORTHO05D005661 7.9e-50 201.8 177 65.0
PSO339G5531 Papaver somniferum HOM05D004676 ORTHO05D005661 1.0e-49 201.4 186 67.7
Ca_11220_v3 Cicer arietinum L. HOM05D004676 ORTHO05D005661 1.4e-49 201.1 177 66.1
Prupe.6G077300 Prunus persica HOM05D004676 ORTHO05D005661 1.8e-49 200.7 180 71.1
PSO151G0082 Papaver somniferum HOM05D004676 ORTHO05D005661 2.3e-49 200.3 186 67.2
Ca_09918_v3 Cicer arietinum L. HOM05D004676 ORTHO05D005661 3.0e-49 199.9 177 66.7
Eucgr.E01882 Eucalyptus grandis HOM05D004676 ORTHO05D005661 3.0e-49 199.9 138 75.4
Psat0s2898g0040 Pisum sativum HOM05D004676 ORTHO05D005661 3.0e-49 199.9 177 66.7
TAR100G0004 Trochodendron aralioides HOM05D004676 ORTHO05D005661 1.1e-48 198.0 183 66.7
VMungo0720G1898 Vigna mungo HOM05D004676 ORTHO05D005661 1.1e-48 198.0 181 65.7
CDE07G0255 Ceratophyllum demersum HOM05D004676 ORTHO05D005661 1.5e-48 197.6 136 73.5
Phvul.007G016200 Phaseolus vulgaris HOM05D004676 ORTHO05D005661 2.0e-48 197.2 182 61.5
Eucgr.J02052 Eucalyptus grandis HOM05D004676 ORTHO05D005661 2.6e-48 196.8 183 70.5
Glyma.20G104700 Glycine max HOM05D004676 ORTHO05D005661 2.6e-48 196.8 181 64.1
BcaB02g10212 Brassica carinata HOM05D004676 ORTHO05D005661 3.3e-48 196.4 177 75.7
Lj5g0019317 Lotus japonicus HOM05D004676 ORTHO05D005661 5.7e-48 195.7 182 57.7
Cc01_g12890 Coffea canephora HOM05D004676 ORTHO05D005661 7.4e-48 195.3 190 66.3
CANSAT21G2535 Cannabis sativa HOM05D004676 ORTHO05D005661 9.7e-48 194.9 185 69.7
BolC4t27336H Brassica oleracea HOM05D004676 ORTHO05D005661 2.2e-47 193.7 173 68.2
CDE04G1893 Ceratophyllum demersum HOM05D004676 ORTHO05D005661 3.7e-47 193.0 174 65.5
RcHm_v2.0_Chr5g0064551 Rosa chinensis HOM05D004676 ORTHO05D005661 8.2e-47 191.8 180 68.3
Glyma.10G284600 Glycine max HOM05D004676 ORTHO05D005661 1.4e-46 191.0 181 66.3
MD03G1093300 Malus domestica HOM05D004676 ORTHO05D005661 1.8e-46 190.7 182 67.0
TAR588G0001 Trochodendron aralioides HOM05D004676 ORTHO05D005661 1.8e-46 190.7 137 71.5
MD11G1108100 Malus domestica HOM05D004676 ORTHO05D005661 3.1e-46 189.9 130 74.6
ECA233G5350 Erigeron canadensis HOM05D004676 ORTHO05D005661 2.6e-45 186.8 181 64.1
ATR0733G034 Amborella trichopoda HOM05D004676 ORTHO05D005661 3.8e-44 183.0 133 72.2
BraA07t29644Z Brassica rapa HOM05D004676 ORTHO05D005661 6.5e-44 182.2 167 69.5
Lalb_Chr02g0143571 Lupinus albus HOM05D004676 ORTHO05D005661 8.5e-44 181.8 182 57.7
A04p05090 Brassica napus HOM05D004676 ORTHO05D005661 1.5e-43 181.0 173 68.2
A04p21940 Brassica napus HOM05D004676 ORTHO05D005661 1.5e-43 181.0 173 68.2
BraA04t17761Z Brassica rapa HOM05D004676 ORTHO05D005661 1.5e-43 181.0 173 68.2
Lalb_Chr06g0163861 Lupinus albus HOM05D004676 ORTHO05D005661 1.9e-43 180.6 182 55.5
TAR677G0002 Trochodendron aralioides HOM05D004676 ORTHO05D005661 3.2e-43 179.9 183 61.2
RcHm_v2.0_Chr5g0064841 Rosa chinensis HOM05D004676 ORTHO05D005661 1.6e-42 177.6 137 70.1
HPP92_003389 Vanilla planifolia HOM05D004676 ORTHO05D005661 2.1e-42 177.2 127 71.7
FAN11G1736 Fragaria x ananassa HOM05D002246 ORTHO05D002308 1.0e-41 174.9 180 62.2
FvH4_3g36120 Fragaria vesca HOM05D002246 ORTHO05D002308 3.0e-41 173.3 180 60.0
Pp3c8_12040 Physcomitrium patens HOM05D004676 ORTHO05D005661 1.2e-40 171.4 187 54.0
Mapoly0006s0051 Marchantia polymorpha HOM05D004676 ORTHO05D005661 1.5e-40 171.0 180 61.1
BcaC02g08125 Brassica carinata HOM05D004676 ORTHO05D005661 2.0e-40 170.6 121 71.1
SEGI_40255 Sequoiadendron giganteum HOM05D004676 ORTHO05D005661 3.3e-40 169.9 177 54.2
COL.COLO4_18509 Corchorus olitorius HOM05D004676 ORTHO05D005661 4.4e-40 169.5 99 84.8
TAR383G0008 Trochodendron aralioides HOM05D004676 ORTHO05D005661 2.8e-39 166.8 182 63.2
TAR455G0002 Trochodendron aralioides HOM05D004676 ORTHO05D005661 2.8e-39 166.8 182 63.2
Os09g0103700 Oryza sativa ssp. japonica HOM05D004676 ORTHO05D005661 4.8e-39 166.0 162 56.8
Zm00001eb095710 Zea mays HOM05D004676 ORTHO05D005661 6.3e-39 165.6 142 64.8
Zm00001eb307410 Zea mays HOM05D004676 ORTHO05D005661 1.4e-38 164.5 133 66.2
AagrBONN_evm.TU.Sc2ySwM_228.4612 Anthoceros agrestis HOM05D004676 ORTHO05D005661 4.1e-38 162.9 114 70.2
Os05g0297400 Oryza sativa ssp. japonica HOM05D004676 ORTHO05D005661 5.0e-36 156.0 147 57.1
SMO117G0168 Selaginella moellendorffii HOM05D004676 ORTHO05D005661 9.4e-35 151.8 127 63.0
C04p58100 Brassica napus HOM05D004676 ORTHO05D005661 4.4e-32 142.9 96 75.0
ECA233G0785 Erigeron canadensis HOM05D004676 ORTHO05D005661 3.5e-29 133.3 100 70.0
BraA07t30700Z Brassica rapa HOM05D004676 ORTHO05D005661 4.5e-29 132.9 90 75.6
ATR0693G379 Amborella trichopoda HOM05D004676 ORTHO05D005661 8.5e-28 128.6 133 56.4
ECA233G0017 Erigeron canadensis HOM05D004676 ORTHO05D005661 4.2e-27 126.3 100 68.0
CBR_g53496 Chara braunii HOM05D004676 ORTHO05D137281 3.6e-26 123.2 105 58.1
Eucgr.E01961 Eucalyptus grandis HOM05D004676 ORTHO05D005661 2.8e-23 113.6 133 64.7
RcHm_v2.0_Chr5g0064811 Rosa chinensis HOM05D004676 ORTHO05D005661 1.8e-22 110.9 181 51.4
HPP92_003385 Vanilla planifolia HOM05D004676 ORTHO05D005661 1.9e-19 100.9 64 75.0
MD11G1107700 Malus domestica HOM05D004676 ORTHO05D005661 5.6e-19 99.4 72 69.4
Dinv42954 Davidia involucrata HOM05D004736 ORTHO05D006424 1.0e-17 95.1 51 88.2
Dinv43146 Davidia involucrata HOM05D004736 ORTHO05D006424 1.0e-17 95.1 51 88.2
ECA233G4946 Erigeron canadensis HOM05D004676 ORTHO05D005661 2.3e-17 94.0 182 47.3
TAR625G0807 Trochodendron aralioides HOM05D004676 ORTHO05D005661 4.0e-17 93.2 63 73.0
ECA247G4102 Erigeron canadensis HOM05D004676 ORTHO05D005661 4.9e-15 86.3 180 37.8
ECA233G2734 Erigeron canadensis HOM05D004676 ORTHO05D005661 1.7e-12 77.8 45 82.2
Cre09.g389652 Chlamydomonas reinhardtii HOM05D004676 ORTHO05D005661 8.9e-09 65.5 120 36.7
SEGI_06382 Sequoiadendron giganteum HOM05D004676 ORTHO05D005661 2.6e-08 63.9 40 72.5


User provided reference genes

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