Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g005010.4 Solanum lycopersicum HOM05D004120 ORTHO05D004951 4.6e-183 644.4 329 100.0
Sopen08g001030 Solanum pennellii HOM05D004120 ORTHO05D004951 7.4e-181 637.1 326 99.4
PGSC0003DMG402001159 Solanum tuberosum HOM05D004120 ORTHO05D004951 9.4e-176 620.2 326 96.9
CAN.G1216.15 Capsicum annuum HOM05D004120 ORTHO05D004951 3.4e-157 558.5 327 89.6
Peaxi162Scf00045g00028 Petunia axillaris HOM05D004120 ORTHO05D004951 4.7e-135 485.0 326 78.8
Hma1.2p1_0585F.1_g183700 Hydrangea macrophylla HOM05D004120 ORTHO05D004951 1.1e-134 483.8 330 76.4
Dinv28953 Davidia involucrata HOM05D004120 ORTHO05D004951 4.0e-134 481.9 328 76.5
DCAR_008274 Daucus carota HOM05D004120 ORTHO05D004951 2.0e-133 479.6 329 75.4
Dinv25212 Davidia involucrata HOM05D004120 ORTHO05D004951 5.8e-133 478.0 331 75.8
CSS0046330 Camellia sinensis var. sinensis HOM05D004120 ORTHO05D004951 1.7e-132 476.5 326 75.8
TAR629G2715 Trochodendron aralioides HOM05D004120 ORTHO05D004951 6.6e-129 464.5 331 75.2
GSVIVG01013166001 Vitis vinifera HOM05D004120 ORTHO05D004951 1.5e-128 463.4 328 75.0
Cc08_g02620 Coffea canephora HOM05D004120 ORTHO05D004951 3.3e-128 462.2 334 74.6
MD00G1220600 Malus domestica HOM05D004120 ORTHO05D004951 9.5e-128 460.7 329 73.3
Nn6g33597 Nelumbo nucifera HOM05D004120 ORTHO05D004951 2.1e-127 459.5 336 73.8
CANSAT21G2618 Cannabis sativa HOM05D004120 ORTHO05D004951 4.7e-127 458.4 331 73.4
Nn1g00518 Nelumbo nucifera HOM05D004120 ORTHO05D004951 6.2e-127 458.0 336 75.0
Lsat_1_v5_gn_6_79560 Lactuca sativa HOM05D004120 ORTHO05D004951 6.8e-126 454.5 333 71.5
RcHm_v2.0_Chr7g0209431 Rosa chinensis HOM05D004120 ORTHO05D004951 2.0e-125 453.0 326 71.5
AUR62018721 Chenopodium quinoa HOM05D004120 ORTHO05D004951 2.6e-125 452.6 333 73.0
Eucgr.D02191 Eucalyptus grandis HOM05D004120 ORTHO05D004951 1.3e-124 450.3 277 82.3
EL10Ac5g12129 Beta vulgaris HOM05D004120 ORTHO05D004951 1.7e-124 449.9 332 72.0
Prupe.5G038500 Prunus persica HOM05D004120 ORTHO05D004951 2.2e-124 449.5 327 72.2
Oeu053047.1 Olea europaea HOM05D004120 ORTHO05D004951 3.7e-124 448.7 327 74.0
PGR031G2717 Punica granatum HOM05D004120 ORTHO05D004951 4.9e-124 448.4 334 71.0
Rhsim11G0014500 Rhododendron simsii HOM05D004120 ORTHO05D004951 6.4e-124 448.0 330 71.8
Oeu028027.1 Olea europaea HOM05D004120 ORTHO05D004951 1.4e-123 446.8 329 73.6
HanXRQChr03g0084021 Helianthus annuus HOM05D004120 ORTHO05D004951 3.2e-123 445.7 338 69.5
ECA240G4620 Erigeron canadensis HOM05D004120 ORTHO05D004951 4.1e-123 445.3 330 71.8
Sed0006792 Sechium edule HOM05D004120 ORTHO05D004951 4.1e-123 445.3 328 71.6
Manes.17G013200 Manihot esculenta HOM05D004120 ORTHO05D004951 5.4e-123 444.9 315 74.3
FvH4_5g21880 Fragaria vesca HOM05D004120 ORTHO05D004951 9.2e-123 444.1 326 70.6
Thecc.03G228600 Theobroma cacao HOM05D004120 ORTHO05D004951 9.2e-123 444.1 336 72.6
FAN18G3415 Fragaria x ananassa HOM05D004120 ORTHO05D004951 1.6e-122 443.4 326 70.6
Potri.001G143400 Populus trichocarpa HOM05D004120 ORTHO05D004951 1.6e-122 443.4 337 71.5
MSTRG.13757 Avicennia marina HOM05D004120 ORTHO05D004951 2.1e-122 443.0 330 71.5
CiPaw.11G092700 Carya illinoinensis HOM05D004120 ORTHO05D004951 2.7e-122 442.6 318 73.9
Ciclev10031866m.g Citrus clementina HOM05D004120 ORTHO05D004951 3.5e-122 442.2 333 71.8
Cfa012429 Carpinus fangiana HOM05D004120 ORTHO05D004951 6.0e-122 441.4 327 71.6
Gohir.A08G156900 Gossypium hirsutum HOM05D004120 ORTHO05D004951 6.0e-122 441.4 318 75.2
CiPaw.12G063200 Carya illinoinensis HOM05D004120 ORTHO05D004951 7.8e-122 441.0 318 72.6
ClCG10G001730 Citrullus lanatus HOM05D004120 ORTHO05D004951 1.3e-121 440.3 334 71.0
Gohir.D08G177300 Gossypium hirsutum HOM05D004120 ORTHO05D004951 1.3e-121 440.3 337 72.1
arahy.Tifrunner.gnm1.ann1.482M5A Arachis hypogaea HOM05D004120 ORTHO05D004951 1.7e-121 439.9 320 73.4
arahy.Tifrunner.gnm1.ann1.G7H05W Arachis hypogaea HOM05D004120 ORTHO05D004951 1.7e-121 439.9 320 73.4
TWI81G0459 Tripterygium wilfordii HOM05D004120 ORTHO05D004951 2.3e-121 439.5 320 73.1
Cpa.g.sc239.7 Carica papaya HOM05D004120 ORTHO05D004951 3.0e-121 439.1 339 69.9
FAN04G1856 Fragaria x ananassa HOM05D004120 ORTHO05D004951 6.6e-121 438.0 326 70.2
CsaV3_3G001840 Cucumis sativus L. HOM05D004120 ORTHO05D004951 1.5e-120 436.8 326 71.5
COL.COLO4_17048 Corchorus olitorius HOM05D004120 ORTHO05D004951 1.9e-120 436.4 277 81.2
Phvul.002G007300 Phaseolus vulgaris HOM05D004120 ORTHO05D004951 5.6e-120 434.9 324 73.1
MELO3C013859.2 Cucumis melo HOM05D004120 ORTHO05D004951 7.3e-120 434.5 327 71.6
QL12p005624 Quercus lobata HOM05D004120 ORTHO05D004951 7.3e-120 434.5 315 74.3
Aqoxy3G02384 Aquilegia oxysepala HOM05D004120 ORTHO05D004951 1.2e-119 433.7 335 71.0
Sabra01G0111800 Salix brachista HOM05D004120 ORTHO05D004951 2.8e-119 432.6 364 66.5
Ca_24652_v3 Cicer arietinum L. HOM05D004120 ORTHO05D004951 3.6e-119 432.2 317 72.6
Gorai.004G185700 Gossypium raimondii HOM05D004120 ORTHO05D004951 4.7e-119 431.8 354 68.9
VMungo1215G0016 Vigna mungo HOM05D004120 ORTHO05D004951 4.7e-119 431.8 328 72.9
Duzib084G1060 Durio zibethinus HOM05D004120 ORTHO05D004951 6.2e-119 431.4 336 69.9
Migut.E00930 Erythranthe guttata HOM05D004120 ORTHO05D004951 6.2e-119 431.4 279 81.0
Glyma.01G198500 Glycine max HOM05D004120 ORTHO05D004951 3.1e-118 429.1 330 73.0
Hund14402 Selenicereus undatus HOM05D004120 ORTHO05D004951 5.2e-118 428.3 333 69.7
CDE03G0015 Ceratophyllum demersum HOM05D004120 ORTHO05D004951 1.5e-117 426.8 292 74.7
Lalb_Chr16g0379111 Lupinus albus HOM05D004120 ORTHO05D004951 9.9e-117 424.1 304 74.0
Ah.12g054990 Amaranthus hybridus HOM05D004120 ORTHO05D004951 1.3e-116 423.7 328 69.8
Lj2g0014948 Lotus japonicus HOM05D004120 ORTHO05D004951 1.3e-116 423.7 323 69.7
THA.LOC104807951 Tarenaya hassleriana HOM05D004120 ORTHO05D004951 1.7e-116 423.3 321 68.5
Sc01g0007480 Simmondsia chinensis HOM05D004120 ORTHO05D004951 2.9e-116 422.5 313 72.8
vmacro00332 Vaccinium macrocarpon HOM05D004120 ORTHO05D004951 2.9e-116 422.5 388 62.1
PSO782G3668 Papaver somniferum HOM05D004120 ORTHO05D004951 4.9e-116 421.8 334 69.5
Glyma.11G043400 Glycine max HOM05D004120 ORTHO05D004951 6.4e-116 421.4 319 72.4
Lalb_Chr05g0213941 Lupinus albus HOM05D004120 ORTHO05D004951 5.4e-115 418.3 319 70.8
AL4G31300 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 9.2e-115 417.5 333 65.8
PSO063G1634 Papaver somniferum HOM05D004120 ORTHO05D004951 9.2e-115 417.5 286 76.6
unitig_52.g17209 Utricularia gibba HOM05D004120 ORTHO05D004951 4.6e-114 415.2 271 79.7
Medtr5g014430 Medicago truncatula HOM05D004120 ORTHO05D004951 1.3e-113 413.7 322 70.5
Carub.0004s1696 Capsella rubella HOM05D004120 ORTHO05D004951 3.9e-113 412.1 340 64.7
AUR62007285 Chenopodium quinoa HOM05D004120 ORTHO05D004951 3.9e-113 412.1 327 69.4
TPR.G7833 Trifolium pratense HOM05D004120 ORTHO05D004951 1.1e-112 410.6 321 70.7
unitig_699.g19781 Utricularia gibba HOM05D004120 ORTHO05D004951 1.9e-112 409.8 280 75.7
Atru.chr6.1717 Acer truncatum HOM05D004120 ORTHO05D004951 4.3e-112 408.7 319 71.2
BolC4t22936H Brassica oleracea HOM05D004120 ORTHO05D004951 5.6e-112 408.3 337 64.4
ATR0049G040 Amborella trichopoda HOM05D004120 ORTHO05D004951 9.6e-112 407.5 267 76.8
CARHR129420 Cardamine hirsuta HOM05D004120 ORTHO05D004951 9.6e-112 407.5 333 64.9
BcaC02g11630 Brassica carinata HOM05D004120 ORTHO05D004951 1.2e-111 407.1 336 64.3
C04p12920 Brassica napus HOM05D004120 ORTHO05D004951 1.2e-111 407.1 336 64.3
Sp4g17480 Schrenkiella parvula HOM05D004120 ORTHO05D004951 1.6e-111 406.8 341 63.0
Thhalv10016805m.g Eutrema salsugineum HOM05D004120 ORTHO05D004951 3.6e-111 405.6 335 64.5
THA.LOC104798329 Tarenaya hassleriana HOM05D004120 ORTHO05D004951 8.1e-111 404.4 351 64.7
A03p19500 Brassica napus HOM05D004120 ORTHO05D004951 1.4e-110 403.7 331 63.1
BraA05t19989Z Brassica rapa HOM05D004120 ORTHO05D004951 1.8e-110 403.3 334 64.1
BraA03t11203Z Brassica rapa HOM05D004120 ORTHO05D004951 2.4e-110 402.9 338 64.5
AT2G35260 Arabidopsis thaliana HOM05D004120 ORTHO05D004951 4.0e-110 402.1 336 63.1
A05p10510 Brassica napus HOM05D004120 ORTHO05D004951 9.0e-110 401.0 334 63.8
HPP92_022143 Vanilla planifolia HOM05D004120 ORTHO05D004951 1.2e-109 400.6 309 68.0
Zm00001eb426630 Zea mays HOM05D004120 ORTHO05D004951 1.5e-109 400.2 235 82.1
BcaB02g09465 Brassica carinata HOM05D004120 ORTHO05D004951 3.4e-109 399.1 340 62.6
C03p22720 Brassica napus HOM05D004120 ORTHO05D004951 3.4e-109 399.1 335 63.0
BcaC01g05734 Brassica carinata HOM05D004120 ORTHO05D004951 4.4e-109 398.7 335 62.7
SGA_v2.0_scaffold54G19447 Striga asiatica HOM05D004120 ORTHO05D004951 7.6e-109 397.9 335 65.1
BolC3t14671H Brassica oleracea HOM05D004120 ORTHO05D004951 3.8e-108 395.6 336 63.1
HPP92_022140 Vanilla planifolia HOM05D004120 ORTHO05D004951 3.8e-108 395.6 267 74.5
Os03g0100030 Oryza sativa ssp. japonica HOM05D004120 ORTHO05D004951 8.4e-108 394.4 235 80.4
Thhalv10025287m.g Eutrema salsugineum HOM05D004120 ORTHO05D004951 1.1e-107 394.0 271 74.2
Aa31LG6G560 Aethionema arabicum HOM05D004120 ORTHO05D004951 1.4e-107 393.7 238 81.5
CARHR224560 Cardamine hirsuta HOM05D004120 ORTHO05D004951 1.6e-106 390.2 273 72.5
Carub.0007s2352 Capsella rubella HOM05D004120 ORTHO05D004951 3.5e-106 389.0 273 72.5
AL716U10010 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 7.8e-106 387.9 333 62.8
BcaNung00052 Brassica carinata HOM05D004120 ORTHO05D004951 1.0e-105 387.5 229 82.5
Sp7g16270 Schrenkiella parvula HOM05D004120 ORTHO05D004951 8.7e-105 384.4 229 81.7
C07p49190 Brassica napus HOM05D004120 ORTHO05D004951 1.9e-104 383.3 270 72.6
BolC7t45429H Brassica oleracea HOM05D004120 ORTHO05D004951 1.9e-104 383.3 270 72.6
AL7G36690 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 2.5e-104 382.9 236 78.8
BcaC09g51598 Brassica carinata HOM05D004120 ORTHO05D004951 2.5e-104 382.9 229 81.7
A01p09890 Brassica napus HOM05D004120 ORTHO05D004951 2.5e-104 382.9 229 81.2
A03p50800 Brassica napus HOM05D004120 ORTHO05D004951 2.5e-104 382.9 230 81.3
C01p11590 Brassica napus HOM05D004120 ORTHO05D004951 2.5e-104 382.9 229 81.7
BolC1t01127H Brassica oleracea HOM05D004120 ORTHO05D004951 2.5e-104 382.9 229 81.7
BraA01t00933Z Brassica rapa HOM05D004120 ORTHO05D004951 2.5e-104 382.9 229 81.7
BraA03t14169Z Brassica rapa HOM05D004120 ORTHO05D004951 2.5e-104 382.9 230 81.3
Nitab4.5_0002539g0020 Nicotiana tabacum HOM05D004120 ORTHO05D004951 4.3e-104 382.1 278 75.9
AT4G17840 Arabidopsis thaliana HOM05D004120 ORTHO05D004951 5.6e-104 381.7 229 80.8
ECA246G0968 Erigeron canadensis HOM05D004120 ORTHO05D004951 7.3e-104 381.3 277 71.8
Duzib205G1837 Durio zibethinus HOM05D004120 ORTHO05D004951 1.8e-102 376.7 296 68.9
Psat2g173200 Pisum sativum HOM05D004120 ORTHO05D004951 7.6e-101 371.3 319 64.9
Aa31LG9G15290 Aethionema arabicum HOM05D004120 ORTHO05D004951 1.9e-99 366.7 373 54.7
Haze_08240 Corylus avellana HOM05D004120 ORTHO05D004951 1.9e-99 366.7 331 62.8
Nitab4.5_0000804g0170 Nicotiana tabacum HOM05D004120 ORTHO05D004951 2.5e-96 356.3 326 62.9
Actinidia28172 Actinidia chinensis HOM05D004120 ORTHO05D004951 2.1e-95 353.2 190 93.7
SEGI_24472 Sequoiadendron giganteum HOM05D004120 ORTHO05D004951 2.9e-92 342.8 293 60.8
FAN13G1981 Fragaria x ananassa HOM05D004120 ORTHO05D004951 4.9e-92 342.0 272 66.9
FAN08G2335 Fragaria x ananassa HOM05D004120 ORTHO05D004951 1.2e-90 337.4 272 66.2
unitig_744.g24311 Utricularia gibba HOM05D004120 ORTHO05D004951 1.8e-89 333.6 279 65.6
Actinidia25961 Actinidia chinensis HOM05D004120 ORTHO05D004951 1.1e-83 314.3 257 67.3
MD06G1033000 Malus domestica HOM05D004120 ORTHO05D004951 3.2e-83 312.8 224 74.1
Mapoly0008s0099 Marchantia polymorpha HOM05D004120 ORTHO05D004951 6.5e-76 288.5 285 51.6
Pp3c10_10980 Physcomitrium patens HOM05D004120 ORTHO05D004951 9.7e-72 274.6 299 50.5
Pp3c14_25270 Physcomitrium patens HOM05D004120 ORTHO05D004951 9.7e-72 274.6 229 59.0
CDE06G0385 Ceratophyllum demersum HOM05D004120 ORTHO05D004951 3.1e-70 269.6 239 60.3
HanXRQChr05g0153901 Helianthus annuus HOM05D004120 ORTHO05D004951 9.1e-62 241.5 162 78.4
SMO356G0344 Selaginella moellendorffii HOM05D004120 ORTHO05D004951 2.5e-59 233.4 215 51.6
arahy.Tifrunner.gnm1.ann1.7CR4HZ Arachis hypogaea HOM05D004120 ORTHO05D004951 3.7e-39 166.4 131 65.6
arahy.Tifrunner.gnm1.ann1.K2V32T Arachis hypogaea HOM05D004120 ORTHO05D004951 1.1e-38 164.9 131 64.9
arahy.Tifrunner.gnm1.ann1.WRTU1C Arachis hypogaea HOM05D004120 ORTHO05D004951 7.7e-37 158.7 131 63.4
arahy.Tifrunner.gnm1.ann1.RCE8PR Arachis hypogaea HOM05D004120 ORTHO05D004951 1.5e-35 154.5 132 62.9
arahy.Tifrunner.gnm1.ann1.3C7WBJ Arachis hypogaea HOM05D004120 ORTHO05D004951 3.3e-35 153.3 87 85.1
AagrBONN_evm.TU.Sc2ySwM_117.2801 Anthoceros agrestis HOM05D010715 ORTHO05D004951 1.8e-33 147.5 139 54.0
Aa31sc618G30 Aethionema arabicum HOM05D004120 ORTHO05D004951 1.0e-28 131.7 103 68.0
AagrBONN_evm.TU.Sc2ySwM_117.3803 Anthoceros agrestis HOM05D004120 ORTHO05D004951 3.6e-26 123.2 106 54.7
arahy.Tifrunner.gnm1.ann1.H82JQN Arachis hypogaea HOM05D004120 ORTHO05D021518 2.6e-24 117.1 113 56.6
RcHm_v2.0_Chr6g0284251 Rosa chinensis HOM05D004120 ORTHO05D004951 1.7e-23 114.4 72 75.0
EL10Ac1g01819 Beta vulgaris HOM05D004120 ORTHO05D023811 4.6e-21 106.3 69 76.8
arahy.Tifrunner.gnm1.ann1.JI8VIY Arachis hypogaea HOM05D004120 ORTHO05D021518 8.6e-20 102.1 104 54.8
arahy.Tifrunner.gnm1.ann1.4R7L3N Arachis hypogaea HOM05D004120 ORTHO05D004951 1.5e-19 101.3 55 85.5
arahy.Tifrunner.gnm1.ann1.AE9Z3E Arachis hypogaea HOM05D004120 ORTHO05D004951 5.6e-19 99.4 68 70.6
CBR_g19263 Chara braunii HOM05D004120 ORTHO05D004951 9.5e-19 98.6 141 41.8
arahy.Tifrunner.gnm1.ann1.B3D4NA Arachis hypogaea HOM05D004120 ORTHO05D004951 1.2e-18 98.2 54 83.3
CBR_g56906 Chara braunii HOM05D004120 ORTHO05D004951 2.8e-18 97.1 89 50.6
arahy.Tifrunner.gnm1.ann1.NR0HVE Arachis hypogaea HOM05D004120 ORTHO05D021518 8.0e-18 95.5 57 84.2
AUR62039713 Chenopodium quinoa HOM05D004317 ORTHO05D005031 1.8e-17 94.4 55 81.8
CAN.G399.4 Capsicum annuum HOM05D004120 ORTHO05D004951 1.5e-16 91.3 55 85.5
CAN.G36.13 Capsicum annuum HOM05D004120 ORTHO05D004951 7.5e-16 89.0 53 77.4
arahy.Tifrunner.gnm1.ann1.L0EJKI Arachis hypogaea HOM05D004120 ORTHO05D004951 9.9e-08 62.0 32 81.2
arahy.Tifrunner.gnm1.ann1.E125G1 Arachis hypogaea HOM05D004120 ORTHO05D004951 1.7e-07 61.2 29 89.7
arahy.Tifrunner.gnm1.ann1.BQ9W36 Arachis hypogaea HOM05D004120 ORTHO05D004951 1.1e-06 58.5 29 82.8
arahy.Tifrunner.gnm1.ann1.U1DJ88 Arachis hypogaea HOM05D004120 ORTHO05D007788 1.4e-06 58.2 32 84.4
A01p32880 Brassica napus HOM05D004120 ORTHO05D023811 1.4e-06 58.2 28 92.9
A06p35780 Brassica napus HOM05D004120 ORTHO05D023811 1.4e-06 58.2 28 92.9
BraA01t03409Z Brassica rapa HOM05D004120 ORTHO05D023811 1.4e-06 58.2 28 92.9
Aa31sc185G30 Aethionema arabicum HOM05D004120 ORTHO05D004951 3.2e-06 57.0 41 63.4


User provided reference genes

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