Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g066280.3 Solanum lycopersicum HOM05D006002 ORTHO05D007651 1.2e-211 739.6 368 100.0
Sopen07g034460 Solanum pennellii HOM05D006002 ORTHO05D007651 5.7e-198 694.1 349 98.3
PGSC0003DMG400022243 Solanum tuberosum HOM05D006002 ORTHO05D007651 1.4e-188 662.9 349 93.1
CAN.G943.23 Capsicum annuum HOM05D006002 ORTHO05D007651 7.0e-180 634.0 349 88.0
Nitab4.5_0000294g0110 Nicotiana tabacum HOM05D006002 ORTHO05D007651 1.1e-169 600.1 351 84.6
Nitab4.5_0001235g0050 Nicotiana tabacum HOM05D006002 ORTHO05D007651 6.2e-168 594.3 360 83.1
Peaxi162Scf00232g00102 Petunia axillaris HOM05D006002 ORTHO05D007651 4.9e-165 584.7 349 81.1
Rhsim04G0006400 Rhododendron simsii HOM05D006002 ORTHO05D007651 1.9e-140 503.1 344 70.1
vmacro09790 Vaccinium macrocarpon HOM05D006002 ORTHO05D007651 6.7e-138 494.6 342 69.9
Cc05_g15870 Coffea canephora HOM05D006002 ORTHO05D007651 2.0e-134 483.0 340 67.6
MD10G1197800 Malus domestica HOM05D006002 ORTHO05D007651 2.2e-133 479.6 340 68.2
Manes.03G102600 Manihot esculenta HOM05D006002 ORTHO05D007651 2.2e-133 479.6 342 66.4
TAR627G1081 Trochodendron aralioides HOM05D006002 ORTHO05D007651 2.2e-133 479.6 340 68.5
Actinidia37107 Actinidia chinensis HOM05D006002 ORTHO05D007651 4.9e-133 478.4 344 67.7
Hma1.2p1_0193F.1_g084460 Hydrangea macrophylla HOM05D006002 ORTHO05D007651 3.2e-132 475.7 342 65.5
Hma1.2p1_0193F.1_g084470 Hydrangea macrophylla HOM05D006002 ORTHO05D007651 7.1e-132 474.6 334 66.5
MSTRG.16122 Avicennia marina HOM05D006002 ORTHO05D007651 2.1e-131 473.0 361 64.3
Prupe.4G144100 Prunus persica HOM05D006002 ORTHO05D007651 1.0e-130 470.7 340 67.4
CSS0008604 Camellia sinensis var. sinensis HOM05D006002 ORTHO05D007651 1.3e-130 470.3 351 66.7
Migut.M01570 Erythranthe guttata HOM05D006002 ORTHO05D007651 1.3e-130 470.3 341 66.3
QL04p088541 Quercus lobata HOM05D006002 ORTHO05D007651 1.3e-130 470.3 349 64.2
Lj8A185G55 Lonicera japonica HOM05D006002 ORTHO05D007651 3.9e-130 468.8 327 68.5
Potri.003G221400 Populus trichocarpa HOM05D006002 ORTHO05D007651 1.5e-129 466.8 359 64.1
Lsat_1_v5_gn_7_116060 Lactuca sativa HOM05D006002 ORTHO05D007651 5.6e-129 464.9 344 66.0
TWI53G1943 Tripterygium wilfordii HOM05D006002 ORTHO05D007651 8.2e-128 461.1 354 65.0
Psat3g026200 Pisum sativum HOM05D006002 ORTHO05D007651 1.8e-127 459.9 353 61.8
Glyma.15G260100 Glycine max HOM05D006002 ORTHO05D007651 2.6e-126 456.1 366 60.4
SGA_v2.0_scaffold7G03564 Striga asiatica HOM05D006002 ORTHO05D007651 5.8e-126 454.9 352 63.6
FAN16G0275 Fragaria x ananassa HOM05D006002 ORTHO05D007651 7.6e-126 454.5 328 65.2
Lj3g0018048 Lotus japonicus HOM05D006002 ORTHO05D007651 1.3e-125 453.8 352 61.1
FvH4_3g16091 Fragaria vesca HOM05D006002 ORTHO05D007651 1.7e-125 453.4 321 66.4
FAN11G0453 Fragaria x ananassa HOM05D006002 ORTHO05D007651 1.7e-125 453.4 321 66.7
Nn3g20175 Nelumbo nucifera HOM05D006002 ORTHO05D007651 1.7e-125 453.4 350 63.7
COL.COLO4_25103 Corchorus olitorius HOM05D006002 ORTHO05D007651 2.9e-125 452.6 340 65.0
Glyma.08G167200 Glycine max HOM05D006002 ORTHO05D007651 2.9e-125 452.6 340 63.2
Eucgr.F01438 Eucalyptus grandis HOM05D006002 ORTHO05D007651 1.1e-124 450.7 325 65.5
Ca_09098_v3 Cicer arietinum L. HOM05D006002 ORTHO05D007651 1.4e-124 450.3 353 61.2
RcHm_v2.0_Chr5g0027061 Rosa chinensis HOM05D006002 ORTHO05D007651 1.9e-124 449.9 368 60.6
Sabra03G0164800 Salix brachista HOM05D006002 ORTHO05D007651 1.9e-124 449.9 366 61.7
Medtr7g107330 Medicago truncatula HOM05D006002 ORTHO05D007651 2.5e-124 449.5 346 60.4
unitig_748.g7639 Utricularia gibba HOM05D006002 ORTHO05D007651 4.2e-124 448.7 342 62.9
CANSAT56G1259 Cannabis sativa HOM05D006002 ORTHO05D007651 2.1e-123 446.4 343 64.4
FAN25G3512 Fragaria x ananassa HOM05D006002 ORTHO05D007651 2.7e-123 446.0 325 64.9
HanXRQChr11g0335201 Helianthus annuus HOM05D006002 ORTHO05D007651 4.6e-123 445.3 340 63.2
SalBow8G1862 Salvia bowleyana HOM05D006002 ORTHO05D007651 6.0e-123 444.9 341 64.5
arahy.Tifrunner.gnm1.ann1.0RH0I3 Arachis hypogaea HOM05D006002 ORTHO05D007651 1.8e-122 443.4 342 62.6
arahy.Tifrunner.gnm1.ann1.HWL53Q Arachis hypogaea HOM05D006002 ORTHO05D007651 3.0e-122 442.6 342 62.6
Phvul.005G050900 Phaseolus vulgaris HOM05D006002 ORTHO05D007651 1.1e-121 440.7 340 62.4
Ciclev10020646m.g Citrus clementina HOM05D006002 ORTHO05D007651 9.7e-121 437.6 326 61.7
Gohir.A05G076100 Gossypium hirsutum HOM05D006002 ORTHO05D007651 9.7e-121 437.6 370 60.3
PGR083G2675 Punica granatum HOM05D006002 ORTHO05D007651 2.8e-120 436.0 371 59.6
Gorai.009G080200 Gossypium raimondii HOM05D006002 ORTHO05D007651 4.8e-120 435.3 370 59.7
Hund02296 Selenicereus undatus HOM05D006002 ORTHO05D007651 4.8e-120 435.3 334 62.6
THA.LOC104819332 Tarenaya hassleriana HOM05D006002 ORTHO05D007651 4.1e-119 432.2 326 62.3
VMungo1080G0998 Vigna mungo HOM05D001395 ORTHO05D002039 4.1e-119 432.2 332 62.0
PSO675G3741 Papaver somniferum HOM05D006002 ORTHO05D007651 6.9e-119 431.4 339 59.0
PSO541G1619 Papaver somniferum HOM05D006002 ORTHO05D007651 1.5e-118 430.3 339 59.0
CsaV3_2G022200 Cucumis sativus L. HOM05D006002 ORTHO05D007651 7.6e-118 427.9 345 60.0
MBI02_g43301_MAGBIO Magnolia biondii HOM05D006002 ORTHO05D007651 1.3e-117 427.2 353 58.9
Sc03g0007860 Simmondsia chinensis HOM05D006002 ORTHO05D007651 1.3e-117 427.2 347 60.5
Aqoxy1G01586 Aquilegia oxysepala HOM05D006002 ORTHO05D007651 1.7e-117 426.8 349 60.2
ClCG11G016270 Citrullus lanatus HOM05D006002 ORTHO05D007651 6.5e-117 424.9 369 57.2
Duzib168G0541 Durio zibethinus HOM05D006002 ORTHO05D007651 3.2e-116 422.5 368 58.2
Sed0002243 Sechium edule HOM05D006002 ORTHO05D007651 7.2e-116 421.4 344 60.2
Thecc.03G324000 Theobroma cacao HOM05D006002 ORTHO05D007651 7.2e-116 421.4 388 56.2
Eucgr.F01442 Eucalyptus grandis HOM05D006002 ORTHO05D007651 3.6e-115 419.1 312 64.4
Ah.04g163380 Amaranthus hybridus HOM05D006002 ORTHO05D007651 6.1e-115 418.3 345 60.3
BolC3t18471H Brassica oleracea HOM05D006002 ORTHO05D007651 7.9e-115 417.9 359 58.8
BcaC01g02672 Brassica carinata HOM05D006002 ORTHO05D007651 1.8e-114 416.8 361 58.4
QL04p088993 Quercus lobata HOM05D006002 ORTHO05D007651 1.8e-114 416.8 291 68.0
BcaB02g09782 Brassica carinata HOM05D006002 ORTHO05D007651 8.8e-114 414.5 335 59.7
ECA236G2913 Erigeron canadensis HOM05D006002 ORTHO05D007651 1.1e-113 414.1 345 59.1
Aa31LG1G17780 Aethionema arabicum HOM05D006002 ORTHO05D007651 3.3e-113 412.5 326 58.9
Haze_07820 Corylus avellana HOM05D006002 ORTHO05D007651 4.8e-112 408.7 301 64.8
Sp2g27210 Schrenkiella parvula HOM05D006002 ORTHO05D007651 6.3e-112 408.3 334 57.8
AT5G64150 Arabidopsis thaliana HOM05D006002 ORTHO05D007651 8.2e-112 407.9 370 56.8
A06p30870 Brassica napus HOM05D006002 ORTHO05D007651 1.1e-111 407.5 324 61.1
Thhalv10004403m.g Eutrema salsugineum HOM05D006002 ORTHO05D007651 1.1e-111 407.5 359 56.3
CARHR278060 Cardamine hirsuta HOM05D006002 ORTHO05D007651 4.1e-111 405.6 333 59.2
C03p62100 Brassica napus HOM05D006002 ORTHO05D007651 2.0e-110 403.3 353 58.1
CDE02G2905 Ceratophyllum demersum HOM05D006002 ORTHO05D007651 2.0e-110 403.3 351 57.0
AL8G41420 Arabidopsis lyrata HOM05D006002 ORTHO05D007651 7.7e-110 401.4 351 57.3
CiPaw.11G062100 Carya illinoinensis HOM05D006002 ORTHO05D007651 7.7e-110 401.4 295 64.7
Carub.0008s2494 Capsella rubella HOM05D006002 ORTHO05D007651 2.9e-109 399.4 329 58.7
BraA06t26026Z Brassica rapa HOM05D006002 ORTHO05D007651 8.5e-109 397.9 318 61.0
Gohir.D05G078800 Gossypium hirsutum HOM05D006002 ORTHO05D007651 2.5e-108 396.4 350 58.0
Gohir.1Z049302 Gossypium hirsutum HOM05D006002 ORTHO05D007651 4.7e-107 392.1 362 56.9
Lalb_Chr25g0284701 Lupinus albus HOM05D006002 ORTHO05D007651 6.7e-106 388.3 284 64.1
EL10Ac4g08518 Beta vulgaris HOM05D006002 ORTHO05D007651 1.1e-105 387.5 367 54.2
MELO3C010553.2 Cucumis melo HOM05D006002 ORTHO05D007651 3.3e-105 386.0 303 60.7
Dinv42524 Davidia involucrata HOM05D006002 ORTHO05D007651 1.4e-103 380.6 345 56.5
MBI02_g20986_MAGBIO Magnolia biondii HOM05D006002 ORTHO05D007651 1.2e-102 377.5 379 53.0
GSVIVG01020461001 Vitis vinifera HOM05D006002 ORTHO05D007651 2.9e-101 372.9 250 68.8
HPP92_001894 Vanilla planifolia HOM05D006002 ORTHO05D004222 2.0e-97 360.1 332 56.9
QL03p043202 Quercus lobata HOM05D006002 ORTHO05D007651 7.7e-94 348.2 260 66.2
SEGI_37419 Sequoiadendron giganteum HOM05D006002 ORTHO05D007651 5.5e-92 342.0 285 57.2
ATR0165G036 Amborella trichopoda HOM05D006002 ORTHO05D007651 7.5e-89 331.6 247 61.1
SMO145G0236 Selaginella moellendorffii HOM05D006002 ORTHO05D007651 9.4e-84 314.7 331 48.6
Os12g0612500 Oryza sativa ssp. japonica HOM05D006002 ORTHO05D007651 8.0e-83 311.6 321 50.8
MD05G1214000 Malus domestica HOM05D006002 ORTHO05D007651 3.5e-78 296.2 250 59.6
Atru.chr2.1886 Acer truncatum HOM05D006002 ORTHO05D007651 4.5e-78 295.8 261 55.6
Oeu052016.1 Olea europaea HOM05D006002 ORTHO05D007651 1.7e-77 293.9 215 68.4
Pp3c1_22930 Physcomitrium patens HOM05D006002 ORTHO05D007651 1.5e-76 290.8 461 38.0
AUR62041934 Chenopodium quinoa HOM05D006002 ORTHO05D007651 4.7e-75 285.8 304 51.3
Potri.018G000850 Populus trichocarpa HOM05D006002 ORTHO05D007651 5.2e-74 282.3 322 49.1
AUR62035491 Chenopodium quinoa HOM05D006002 ORTHO05D007651 6.8e-74 282.0 302 51.3
AagrBONN_evm.TU.Sc2ySwM_344.4971 Anthoceros agrestis HOM05D006002 ORTHO05D007651 1.5e-73 280.8 325 47.1
Mapoly0051s0043 Marchantia polymorpha HOM05D006002 ORTHO05D007651 2.6e-73 280.0 443 37.5
Cfa022974 Carpinus fangiana HOM05D006002 ORTHO05D007651 1.4e-71 274.2 222 61.3
Actinidia35439 Actinidia chinensis HOM05D006002 ORTHO05D007651 1.5e-68 264.2 204 65.7
Cpa.g.sc42.79 Carica papaya HOM05D006002 ORTHO05D007651 4.7e-67 259.2 213 62.4
CBR_g8978 Chara braunii HOM05D006002 ORTHO05D007651 1.9e-63 247.3 420 34.8
TPR.G32276 Trifolium pratense HOM05D006002 ORTHO05D007651 4.0e-58 229.6 340 38.2
TPR.G18376 Trifolium pratense HOM05D006002 ORTHO05D007651 3.0e-53 213.4 156 64.7
MCO01G477 Micromonas commoda HOM05D006002 ORTHO05D007651 6.8e-50 202.2 386 36.5
Potri.001G003632 Populus trichocarpa HOM05D006002 ORTHO05D007651 2.4e-47 193.7 151 63.6
QL04p062372 Quercus lobata HOM05D006002 ORTHO05D007651 2.3e-45 187.2 125 71.2
Cpa.g.sc42.82 Carica papaya HOM05D006002 ORTHO05D007651 1.9e-44 184.1 122 68.0
Cre07.g337516 Chlamydomonas reinhardtii HOM05D006002 ORTHO05D007651 1.6e-43 181.0 495 29.5
QL04p088694 Quercus lobata HOM05D006002 ORTHO05D007651 6.8e-42 175.6 172 56.4
Zm00001eb031660 Zea mays HOM05D006002 ORTHO05D007651 1.1e-39 168.3 125 60.0
PRCOL_00003514 Prasinoderma coloniale HOM05D006002 ORTHO05D007651 2.7e-38 163.7 368 32.6
MD05G1214300 Malus domestica HOM05D006002 ORTHO05D007651 3.9e-37 159.8 112 71.4
SEGI_15629 Sequoiadendron giganteum HOM05D006002 ORTHO05D007651 8.1e-35 152.1 123 54.5
COL.COLO4_30126 Corchorus olitorius HOM05D006002 ORTHO05D007651 4.3e-28 129.8 85 65.9
BcaB04g17517 Brassica carinata HOM05D006002 ORTHO05D007651 5.8e-25 119.4 101 53.5
QL04p089617 Quercus lobata HOM05D002182 ORTHO05D004671 3.8e-24 116.7 126 52.4
QL03p043192 Quercus lobata HOM05D006002 ORTHO05D007651 1.8e-18 97.8 60 73.3
QL04p089868 Quercus lobata HOM05D006002 ORTHO05D007651 4.0e-18 96.7 65 64.6
CAN.G548.23 Capsicum annuum HOM05D006002 ORTHO05D007651 1.2e-14 85.1 119 44.5
CAN.G42.13 Capsicum annuum HOM05D006002 ORTHO05D007651 2.3e-13 80.9 56 75.0
Cfa023409 Carpinus fangiana HOM05D006002 ORTHO05D126491 2.0e-09 67.8 241 29.5


User provided reference genes

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