Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g066200.4 Solanum lycopersicum HOM05D003788 ORTHO05D004633 0.0e+00 2616.6 1341 100.0
Sopen07g034380 Solanum pennellii HOM05D003788 ORTHO05D004633 0.0e+00 2538.1 1399 94.4
PGSC0003DMG400022144 Solanum tuberosum HOM05D003788 ORTHO05D004633 0.0e+00 2419.8 1399 90.9
Nitab4.5_0000152g0020 Nicotiana tabacum HOM05D003788 ORTHO05D004633 0.0e+00 1611.7 1465 67.2
Nitab4.5_0001732g0050 Nicotiana tabacum HOM05D003788 ORTHO05D004633 0.0e+00 1593.9 1411 67.8
Peaxi162Scf00232g00078 Petunia axillaris HOM05D003788 ORTHO05D004633 0.0e+00 1412.5 1390 62.2
Dinv40920 Davidia involucrata HOM05D003788 ORTHO05D004633 1.3e-215 754.6 1485 41.0
Dinv19640 Davidia involucrata HOM05D003788 ORTHO05D004633 1.7e-194 684.5 1447 39.7
Oeu052883.2 Olea europaea HOM05D003788 ORTHO05D004633 1.7e-183 647.9 1487 37.4
CSS0022631 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 2.3e-172 610.9 1455 37.7
Oeu015274.1 Olea europaea HOM05D003788 ORTHO05D004633 7.0e-161 572.8 1298 39.4
SalBow8G5584 Salvia bowleyana HOM05D003788 ORTHO05D004633 4.6e-152 543.5 1471 36.3
QL08p000460 Quercus lobata HOM05D003788 ORTHO05D004633 1.3e-151 542.0 1515 35.2
Cfa016964 Carpinus fangiana HOM05D003788 ORTHO05D004633 5.2e-148 530.0 1504 34.6
CSS0001498 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 1.1e-145 522.3 1414 36.0
CSS0046183 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 1.4e-145 521.9 1415 36.0
Prupe.6G035800 Prunus persica HOM05D003788 ORTHO05D004633 3.5e-144 517.3 1501 34.3
Rhsim06G0235500 Rhododendron simsii HOM05D003788 ORTHO05D004633 3.5e-144 517.3 1458 34.8
Atru.chr2.3902 Acer truncatum HOM05D003788 ORTHO05D004633 3.9e-143 513.8 1500 34.7
Haze_09919 Corylus avellana HOM05D003788 ORTHO05D004633 5.0e-143 513.5 1536 33.8
Thecc.07G001100 Theobroma cacao HOM05D003788 ORTHO05D004633 2.5e-142 511.1 1495 34.0
Manes.05G204500 Manihot esculenta HOM05D003788 ORTHO05D004633 2.1e-141 508.1 1527 34.3
Actinidia31533 Actinidia chinensis HOM05D003788 ORTHO05D004633 3.0e-135 487.6 1202 36.2
MD11G1046500 Malus domestica HOM05D003788 ORTHO05D004633 8.6e-135 486.1 1488 34.0
COL.COLO4_07793 Corchorus olitorius HOM05D003788 ORTHO05D004633 1.1e-134 485.7 1500 33.1
Potri.001G472400 Populus trichocarpa HOM05D003788 ORTHO05D004633 1.1e-134 485.7 1539 33.3
Duzib213G0477 Durio zibethinus HOM05D003788 ORTHO05D004633 1.5e-134 485.3 1532 33.1
MSTRG.16130 Avicennia marina HOM05D003788 ORTHO05D004633 1.2e-133 482.3 1352 35.5
Duzib268G1743 Durio zibethinus HOM05D003788 ORTHO05D004633 1.1e-132 479.2 1513 33.0
RcHm_v2.0_Chr5g0074531 Rosa chinensis HOM05D003788 ORTHO05D004633 1.1e-132 479.2 1517 33.3
Sabra16G0320700 Salix brachista HOM05D003788 ORTHO05D004633 5.8e-131 473.4 1538 32.4
Potri.011G169100 Populus trichocarpa HOM05D003788 ORTHO05D004633 3.2e-129 467.6 1538 31.7
Gorai.013G147700 Gossypium raimondii HOM05D003788 ORTHO05D004633 1.0e-127 462.6 1508 32.3
MSTRG.7044 Avicennia marina HOM05D003788 ORTHO05D004633 1.9e-126 458.4 1455 34.1
Lj1A901G37 Lonicera japonica HOM05D003788 ORTHO05D004633 3.3e-126 457.6 1237 35.7
Gohir.D13G131700 Gossypium hirsutum HOM05D003788 ORTHO05D004633 4.3e-126 457.2 1501 32.5
Ciclev10007254m.g Citrus clementina HOM05D003788 ORTHO05D004633 9.6e-126 456.1 1491 32.6
MD03G1043400 Malus domestica HOM05D003788 ORTHO05D004633 1.6e-125 455.3 1496 33.1
FAN21G2445 Fragaria x ananassa HOM05D003788 ORTHO05D004633 2.8e-125 454.5 1494 32.1
vmacro11644 Vaccinium macrocarpon HOM05D003788 ORTHO05D004633 4.7e-125 453.8 1424 32.4
DCAR_013754 Daucus carota HOM05D003788 ORTHO05D004633 8.1e-125 453.0 1506 32.1
Gohir.A13G128300 Gossypium hirsutum HOM05D003788 ORTHO05D004633 1.4e-124 452.2 1494 32.5
Sabra11G0137700 Salix brachista HOM05D003788 ORTHO05D004633 6.8e-124 449.9 1531 31.7
TAR629G3040 Trochodendron aralioides HOM05D003788 ORTHO05D004633 1.5e-123 448.7 1464 32.1
Lj8C184G1 Lonicera japonica HOM05D003788 ORTHO05D004633 2.6e-123 448.0 1231 34.9
FvH4_3g41530 Fragaria vesca HOM05D003788 ORTHO05D004633 4.4e-123 447.2 1527 32.0
FAN16G1134 Fragaria x ananassa HOM05D003788 ORTHO05D004633 5.8e-123 446.8 1502 32.2
CiPaw.11G210900 Carya illinoinensis HOM05D003788 ORTHO05D004633 7.6e-123 446.4 1508 33.0
FAN11G0056 Fragaria x ananassa HOM05D003788 ORTHO05D004633 2.7e-120 438.0 1519 31.9
TAR626G0610 Trochodendron aralioides HOM05D003788 ORTHO05D004633 1.9e-118 431.8 1530 31.9
Cc05_g15760 Coffea canephora HOM05D003788 ORTHO05D004633 5.6e-118 430.3 783 41.8
FAN25G3203 Fragaria x ananassa HOM05D003788 ORTHO05D004633 1.6e-117 428.7 1523 31.3
Manes.01G007100 Manihot esculenta HOM05D003788 ORTHO05D004633 2.1e-117 428.3 1296 33.6
GSVIVG01014849001 Vitis vinifera HOM05D003788 ORTHO05D004633 3.6e-117 427.6 1131 35.4
CiPaw.12G143000 Carya illinoinensis HOM05D003788 ORTHO05D004633 1.1e-110 406.0 1231 33.1
MSTRG.13048 Avicennia marina HOM05D003788 ORTHO05D004633 9.6e-110 402.9 1205 32.6
TAR627G0146 Trochodendron aralioides HOM05D003788 ORTHO05D004633 2.4e-105 388.3 1352 31.1
PGR031G1033 Punica granatum HOM05D003788 ORTHO05D004633 1.3e-103 382.5 1174 33.0
TWI39G0992 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 1.8e-103 382.1 1498 31.2
Duzib170G0482 Durio zibethinus HOM05D003788 ORTHO05D004633 1.5e-102 379.0 1489 31.0
TWI38G0822 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 3.3e-102 377.9 1221 34.2
Eucgr.F01984 Eucalyptus grandis HOM05D003788 ORTHO05D004633 7.4e-102 376.7 1494 31.2
MELO3C014063.2 Cucumis melo HOM05D003788 ORTHO05D004633 6.0e-96 357.1 1387 31.1
CANSAT11G0655 Cannabis sativa HOM05D003788 ORTHO05D004633 1.5e-94 352.4 1423 29.7
CsaV3_3G003820 Cucumis sativus L. HOM05D003788 ORTHO05D004633 2.1e-93 348.6 1461 31.1
ClCG10G003840 Citrullus lanatus HOM05D003788 ORTHO05D004633 3.7e-93 347.8 1394 30.4
ClCG10G003960 Citrullus lanatus HOM05D003788 ORTHO05D004633 3.7e-93 347.8 1393 30.4
Nn1g07620 Nelumbo nucifera HOM05D003788 ORTHO05D004633 3.8e-90 337.8 1019 32.6
Gorai.004G034500 Gossypium raimondii HOM05D003788 ORTHO05D004633 2.1e-88 332.0 1357 30.4
Sed0023936 Sechium edule HOM05D003788 ORTHO05D004633 1.3e-87 329.3 1233 31.6
Gohir.D08G036500 Gossypium hirsutum HOM05D003788 ORTHO05D004633 4.3e-86 324.3 1355 29.8
Sed0020897 Sechium edule HOM05D003788 ORTHO05D004633 2.2e-85 322.0 1223 30.8
Gohir.A08G026000 Gossypium hirsutum HOM05D003788 ORTHO05D004633 2.8e-85 321.6 1338 29.9
ClCG00G001230 Citrullus lanatus HOM05D003788 ORTHO05D004633 6.3e-85 320.5 1446 29.1
TWI14G1222 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 4.4e-78 297.7 954 32.7
Migut.M01579 Erythranthe guttata HOM05D003788 ORTHO05D004633 2.2e-77 295.4 739 37.5
Sc03g0011790 Simmondsia chinensis HOM05D003788 ORTHO05D004633 3.9e-71 274.6 1194 30.9
PSO782G4685 Papaver somniferum HOM05D003788 ORTHO05D004633 5.2e-71 274.2 1417 26.6
AUR62035659 Chenopodium quinoa HOM05D003788 ORTHO05D004633 1.4e-68 266.2 1211 29.1
THA.LOC104811704 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 3.1e-68 265.0 1173 31.0
EL10Ac4g07522 Beta vulgaris HOM05D003788 ORTHO05D004633 3.5e-67 261.5 1169 28.3
AUR62017148 Chenopodium quinoa HOM05D003788 ORTHO05D004633 5.9e-67 260.8 1157 29.1
HanXRQChr17g0546861 Helianthus annuus HOM05D003788 ORTHO05D004633 2.2e-66 258.8 1179 29.2
ECA236G3073 Erigeron canadensis HOM05D003788 ORTHO05D004633 3.8e-66 258.1 1291 28.3
Lsat_1_v5_gn_7_115701 Lactuca sativa HOM05D003788 ORTHO05D004633 2.5e-65 255.4 1111 29.5
Actinidia30346 Actinidia chinensis HOM05D003788 ORTHO05D004633 2.7e-64 251.9 491 40.7
THA.LOC104822683 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 7.5e-62 243.8 1160 29.7
Cc05_g15750 Coffea canephora HOM05D003788 ORTHO05D004633 2.8e-61 241.9 580 35.5
Hma1.2p1_0321F.1_g124360 Hydrangea macrophylla HOM05D003788 ORTHO05D004633 4.8e-61 241.1 437 42.1
Aqoxy4G02274 Aquilegia oxysepala HOM05D003788 ORTHO05D004633 1.8e-60 239.2 1381 26.9
MBI15_g35998_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 2.0e-59 235.7 1330 26.7
MBI14_g10253_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 1.0e-58 233.4 750 33.5
THA.LOC104810306 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 5.0e-58 231.1 1271 28.5
HanXRQChr03g0079411 Helianthus annuus HOM05D003788 ORTHO05D004633 2.5e-57 228.8 1176 28.2
Hund23029 Selenicereus undatus HOM05D003788 ORTHO05D004633 3.2e-57 228.4 1212 28.1
ECA240G4117 Erigeron canadensis HOM05D003788 ORTHO05D004633 8.0e-56 223.8 1154 28.2
Ah.04g166650 Amaranthus hybridus HOM05D003788 ORTHO05D004633 1.2e-54 219.9 416 38.9
unitig_46.g18528 Utricularia gibba HOM05D003788 ORTHO05D004633 1.9e-49 202.6 1121 27.8
Thhalv10012573m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 2.8e-48 198.7 1140 26.8
SGA_v2.0_scaffold11G05962 Striga asiatica HOM05D003788 ORTHO05D004633 4.0e-47 194.9 429 39.4
SGA_v2.0_scaffold7G03552 Striga asiatica HOM05D003788 ORTHO05D004633 6.8e-47 194.1 900 28.2
Zm00001eb079970 Zea mays HOM05D003788 ORTHO05D004633 8.8e-47 193.7 481 33.3
Migut.H01707 Erythranthe guttata HOM05D003788 ORTHO05D004633 1.2e-46 193.4 483 36.2
Aa31LG3G12140 Aethionema arabicum HOM05D003788 ORTHO05D004633 7.5e-46 190.7 1194 26.9
AL8G31870 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 9.8e-46 190.3 1154 28.5
Cpa.g.sc12.61 Carica papaya HOM05D003788 ORTHO05D004633 1.7e-45 189.5 799 30.2
AT5G56240 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 6.3e-45 187.6 1148 27.0
Lsat_1_v5_gn_9_88661 Lactuca sativa HOM05D003788 ORTHO05D004633 1.8e-44 186.0 571 33.1
Os04g0471400 Oryza sativa ssp. japonica HOM05D003788 ORTHO05D004633 1.8e-44 186.0 1170 27.1
Actinidia30347 Actinidia chinensis HOM05D003788 ORTHO05D004633 2.4e-44 185.7 699 31.9
HPP92_022807 Vanilla planifolia HOM05D003788 ORTHO05D004633 4.1e-44 184.9 729 30.3
AL191U10030 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 5.4e-44 184.5 1145 28.1
C02p15420 Brassica napus HOM05D003788 ORTHO05D004633 7.0e-44 184.1 1169 25.6
BolC2t07656H Brassica oleracea HOM05D003788 ORTHO05D004633 7.0e-44 184.1 1169 25.6
HanXRQChr11g0346921 Helianthus annuus HOM05D003788 ORTHO05D004633 7.0e-44 184.1 728 31.2
HPP92_015789 Vanilla planifolia HOM05D003788 ORTHO05D004633 7.8e-43 180.6 672 28.9
BolC9t57603H Brassica oleracea HOM05D003788 ORTHO05D004633 5.0e-42 177.9 1131 26.3
unitig_0.g982 Utricularia gibba HOM05D003788 ORTHO05D004633 1.9e-41 176.0 1140 27.1
C09p47480 Brassica napus HOM05D003788 ORTHO05D004633 4.3e-41 174.9 1157 26.8
Zm00001eb424700 Zea mays HOM05D003788 ORTHO05D004633 4.3e-41 174.9 1093 27.3
Thhalv10012702m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 5.6e-41 174.5 1127 26.0
BcaC04g20117 Brassica carinata HOM05D003788 ORTHO05D004633 1.6e-40 172.9 1131 25.9
CDE11G0275 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 1.4e-39 169.9 492 32.5
BraA10t43453Z Brassica rapa HOM05D003788 ORTHO05D004633 1.3e-37 163.3 1147 25.8
Carub.0008s1656 Capsella rubella HOM05D003788 ORTHO05D004633 1.7e-37 162.9 1152 27.0
AL8G31880 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 2.2e-37 162.5 1125 25.6
Sp6g18100 Schrenkiella parvula HOM05D003788 ORTHO05D004633 2.2e-37 162.5 1151 25.8
C03p15990 Brassica napus HOM05D003788 ORTHO05D004633 8.3e-37 160.6 1142 25.0
A10p13490 Brassica napus HOM05D003788 ORTHO05D004633 3.2e-36 158.7 1135 25.1
CARHR269650 Cardamine hirsuta HOM05D003788 ORTHO05D004633 4.1e-36 158.3 421 34.0
unitig_37.g12213 Utricularia gibba HOM05D003788 ORTHO05D004633 7.0e-36 157.5 1144 26.9
AT5G56250 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 2.0e-35 156.0 418 35.4
BcaB05g22251 Brassica carinata HOM05D003788 ORTHO05D004633 2.0e-35 156.0 1185 24.5
BcaC03g14236 Brassica carinata HOM05D003788 ORTHO05D004633 2.0e-35 156.0 976 26.2
BolC3t14027H Brassica oleracea HOM05D003788 ORTHO05D004633 2.0e-35 156.0 1140 25.1
BraA02t05991Z Brassica rapa HOM05D003788 ORTHO05D004633 5.9e-35 154.5 1162 25.0
BcaB01g04387 Brassica carinata HOM05D003788 ORTHO05D004633 7.8e-35 154.1 345 36.2
BcaC01g06409 Brassica carinata HOM05D003788 ORTHO05D004633 7.8e-35 154.1 1143 24.8
BolC2t07655H Brassica oleracea HOM05D003788 ORTHO05D004633 1.3e-34 153.3 462 32.5
BcaB05g22252 Brassica carinata HOM05D003788 ORTHO05D004633 1.7e-34 152.9 404 31.7
C02p15400 Brassica napus HOM05D003788 ORTHO05D004633 1.7e-34 152.9 462 32.5
BcaC03g14234 Brassica carinata HOM05D003788 ORTHO05D004633 6.6e-34 151.0 461 32.3
Sp6g18090 Schrenkiella parvula HOM05D003788 ORTHO05D004633 2.5e-33 149.1 921 26.3
C09p47500 Brassica napus HOM05D003788 ORTHO05D004633 7.3e-33 147.5 459 31.4
A02p09290 Brassica napus HOM05D003788 ORTHO05D004633 9.5e-33 147.1 1173 24.3
CARHR269640 Cardamine hirsuta HOM05D003788 ORTHO05D004633 2.8e-32 145.6 1148 25.1
ATR0751G208 Amborella trichopoda HOM05D003788 ORTHO05D004633 3.6e-32 145.2 1449 25.5
BcaC01g06410 Brassica carinata HOM05D003788 ORTHO05D004633 3.6e-32 145.2 392 34.7
C03p15980 Brassica napus HOM05D003788 ORTHO05D004633 4.7e-32 144.8 377 35.5
BolC3t14026H Brassica oleracea HOM05D003788 ORTHO05D004633 6.2e-32 144.4 392 34.7
Carub.0008s1657 Capsella rubella HOM05D003788 ORTHO05D004633 1.4e-31 143.3 1139 25.1
A03p13630 Brassica napus HOM05D003788 ORTHO05D004633 4.0e-31 141.7 391 33.8
A02p09250 Brassica napus HOM05D003788 ORTHO05D004633 5.2e-31 141.4 404 33.7
BraA03t10667Z Brassica rapa HOM05D003788 ORTHO05D004633 3.4e-30 138.7 391 33.2
CAN.G838.3 Capsicum annuum HOM05D003788 ORTHO05D043402 1.9e-28 132.9 140 57.9
BcaB01g04386 Brassica carinata HOM05D003788 ORTHO05D004633 4.6e-27 128.3 1152 25.0
CAN.G1483.9 Capsicum annuum HOM05D003788 ORTHO05D043402 7.8e-27 127.5 83 79.5
CDE06G0258 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 1.3e-26 126.7 292 34.2
BraA03t10668Z Brassica rapa HOM05D003788 ORTHO05D004633 5.0e-26 124.8 1187 24.0
BcaC04g20115 Brassica carinata HOM05D003788 ORTHO05D004633 1.8e-23 116.3 224 38.4
BolC9t57606H Brassica oleracea HOM05D003788 ORTHO05D004633 1.8e-23 116.3 224 38.4
MBI14_g12743_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 1.2e-22 113.6 252 36.5
A03p13640 Brassica napus HOM05D003788 ORTHO05D004633 4.9e-21 108.2 1209 23.7
CDE05G2211 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 1.7e-18 99.8 549 27.1
A10p13510 Brassica napus HOM05D003788 ORTHO05D004633 6.2e-16 91.3 160 43.1
HPP92_007487 Vanilla planifolia HOM05D003788 ORTHO05D004633 3.1e-15 89.0 188 35.6
CARHR218680 Cardamine hirsuta HOM05D003788 ORTHO05D004633 7.8e-11 74.3 226 31.9
SEGI_04749 Sequoiadendron giganteum HOM05D003788 ORTHO05D004633 6.6e-10 71.2 276 29.3
BraA02t05990Z Brassica rapa HOM05D003788 ORTHO05D004633 9.6e-09 67.4 244 29.1
Prupe.1G176100 Prunus persica HOM05D010496 ORTHO05D010879 5.2e-07 61.6 88 36.4
SEGI_40378 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 5.2e-07 61.6 343 23.6
CDE03G0063 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 6.9e-07 61.2 124 38.7
Lj2g0022590 Lotus japonicus HOM05D011141 ORTHO05D010879 6.9e-07 61.2 48 60.4
Aqoxy2G04009 Aquilegia oxysepala HOM05D003788 ORTHO05D010879 1.2e-06 60.5 292 26.0
CDE03G0301 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 3.4e-06 58.9 130 35.4
Nn1g09760 Nelumbo nucifera HOM05D003788 ORTHO05D010879 9.9e-06 57.4 303 25.4


User provided reference genes

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