Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g066170.4 Solanum lycopersicum HOM05D003079 ORTHO05D003461 9.9e-173 610.1 336 100.0
Sopen07g034350 Solanum pennellii HOM05D003079 ORTHO05D003461 2.6e-141 505.8 333 85.3
PGSC0003DMG400022146 Solanum tuberosum HOM05D003079 ORTHO05D003461 1.4e-129 466.8 333 80.5
CAN.G623.75 Capsicum annuum HOM05D003079 ORTHO05D003461 4.5e-125 451.8 334 77.8
Peaxi162Scf00232g00614 Petunia axillaris HOM05D003079 ORTHO05D003461 7.2e-115 417.9 343 71.4
Nitab4.5_0009408g0020 Nicotiana tabacum HOM05D003079 ORTHO05D003461 6.1e-114 414.8 341 73.0
Nitab4.5_0000152g0030 Nicotiana tabacum HOM05D003079 ORTHO05D003461 4.4e-112 408.7 359 68.5
Nitab4.5_0002216g0030 Nicotiana tabacum HOM05D003079 ORTHO05D003461 1.7e-84 317.0 341 59.2
Nitab4.5_0003570g0050 Nicotiana tabacum HOM05D003079 ORTHO05D003461 2.5e-83 313.2 341 58.4
Nitab4.5_0000611g0170 Nicotiana tabacum HOM05D003079 ORTHO05D003461 1.6e-82 310.5 345 55.9
Sopen10g001680 Solanum pennellii HOM05D003079 ORTHO05D003461 4.4e-80 302.4 346 54.3
PGSC0003DMG400008693 Solanum tuberosum HOM05D003079 ORTHO05D003461 1.3e-79 300.8 346 54.9
CAN.G492.58 Capsicum annuum HOM05D003079 ORTHO05D003461 1.9e-75 287.0 343 53.6
Nitab4.5_0001622g0150 Nicotiana tabacum HOM05D003079 ORTHO05D003461 7.3e-75 285.0 345 53.3
QL08p000493 Quercus lobata HOM05D003079 ORTHO05D003461 5.8e-56 222.2 341 42.2
TAR627G0159 Trochodendron aralioides HOM05D003079 ORTHO05D003461 1.8e-52 210.7 348 41.4
Manes.05G204700 Manihot esculenta HOM05D003079 ORTHO05D003461 2.3e-52 210.3 341 42.8
RcHm_v2.0_Chr5g0074601 Rosa chinensis HOM05D003079 ORTHO05D003461 1.5e-51 207.6 342 41.5
Cc05_g15720 Coffea canephora HOM05D003079 ORTHO05D003461 7.4e-51 205.3 344 41.6
Duzib268G0697 Durio zibethinus HOM05D003079 ORTHO05D003461 1.3e-50 204.5 352 39.5
Hma1.2p1_0193F.1_g084340 Hydrangea macrophylla HOM05D003079 ORTHO05D003461 1.6e-50 204.1 330 42.1
CSS0018146 Camellia sinensis var. sinensis HOM05D003079 ORTHO05D003461 2.1e-50 203.8 323 46.4
CSS0022300 Camellia sinensis var. sinensis HOM05D003079 ORTHO05D003461 3.7e-50 203.0 302 47.0
CSS0035812 Camellia sinensis var. sinensis HOM05D003079 ORTHO05D003461 3.7e-50 203.0 302 47.0
Ciclev10007777m.g Citrus clementina HOM05D003079 ORTHO05D003461 3.7e-50 203.0 343 40.5
Thecc.07G001500 Theobroma cacao HOM05D003079 ORTHO05D003461 1.1e-49 201.4 325 40.0
CiPaw.12G142800 Carya illinoinensis HOM05D003079 ORTHO05D003461 3.4e-48 196.4 326 40.8
Potri.001G472000 Populus trichocarpa HOM05D003079 ORTHO05D003461 3.4e-48 196.4 341 41.6
Duzib170G0955 Durio zibethinus HOM05D003079 ORTHO05D003461 4.5e-48 196.1 343 38.5
Potri.011G169000 Populus trichocarpa HOM05D003079 ORTHO05D003461 2.9e-47 193.4 348 41.1
CiPaw.12G142700 Carya illinoinensis HOM05D003079 ORTHO05D003461 6.5e-47 192.2 326 40.5
TWI39G1230 Tripterygium wilfordii HOM05D003079 ORTHO05D003461 3.2e-46 189.9 338 39.9
TAR611G0001 Trochodendron aralioides HOM05D003079 ORTHO05D003461 4.2e-46 189.5 349 39.5
FAN21G1152 Fragaria x ananassa HOM05D003079 ORTHO05D003461 1.2e-45 188.0 341 38.7
FAN25G3298 Fragaria x ananassa HOM05D003079 ORTHO05D003461 2.7e-45 186.8 342 38.9
Phvul.L001609 Phaseolus vulgaris HOM05D003079 ORTHO05D003461 1.3e-44 184.5 344 41.0
FAN16G0740 Fragaria x ananassa HOM05D003079 ORTHO05D003461 1.8e-44 184.1 341 38.4
Gorai.013G147800 Gossypium raimondii HOM05D003079 ORTHO05D003461 1.8e-44 184.1 341 36.7
TWI14G0136 Tripterygium wilfordii HOM05D003079 ORTHO05D003461 2.3e-44 183.7 338 39.6
Gohir.D13G131800 Gossypium hirsutum HOM05D003079 ORTHO05D003461 3.0e-44 183.3 341 36.7
Gohir.A13G128400 Gossypium hirsutum HOM05D003079 ORTHO05D003461 3.9e-44 183.0 341 36.4
TWI38G1795 Tripterygium wilfordii HOM05D003079 ORTHO05D003461 3.3e-43 179.9 339 39.8
Dinv40917 Davidia involucrata HOM05D003079 ORTHO05D003461 7.4e-43 178.7 330 39.7
Prupe.6G035500 Prunus persica HOM05D003079 ORTHO05D003461 9.6e-43 178.3 343 37.6
Nn1g07629 Nelumbo nucifera HOM05D003079 ORTHO05D003461 1.3e-42 177.9 333 39.3
FvH4_3g41590 Fragaria vesca HOM05D003079 ORTHO05D003461 2.1e-42 177.2 341 38.1
Peaxi162Scf00006g00810 Petunia axillaris HOM05D003079 ORTHO05D003461 2.1e-42 177.2 347 40.9
FAN11G0995 Fragaria x ananassa HOM05D003079 ORTHO05D003461 4.8e-42 176.0 341 37.8
Oeu005543.1 Olea europaea HOM05D003079 ORTHO05D003461 4.8e-42 176.0 333 39.6
MELO3C014061.2 Cucumis melo HOM05D003079 ORTHO05D003461 1.1e-41 174.9 333 37.2
Actinidia31529 Actinidia chinensis HOM05D003079 ORTHO05D003461 4.0e-41 172.9 317 39.7
Lj8C183T12 Lonicera japonica HOM05D003079 ORTHO05D003461 5.3e-41 172.6 415 37.3
Dinv19642 Davidia involucrata HOM05D003079 ORTHO05D003461 1.2e-40 171.4 307 40.4
Haze_09917 Corylus avellana HOM05D003079 ORTHO05D003461 1.5e-40 171.0 314 39.8
Medtr3g009740 Medicago truncatula HOM05D003079 ORTHO05D003461 3.4e-40 169.9 339 38.6
ClCG00G001200 Citrullus lanatus HOM05D003079 ORTHO05D003461 1.0e-39 168.3 337 35.9
ClCG10G003930 Citrullus lanatus HOM05D003079 ORTHO05D003461 1.0e-39 168.3 337 35.9
CANSAT11G2157 Cannabis sativa HOM05D003079 ORTHO05D003461 1.7e-39 167.5 346 35.0
Glyma.04G113700 Glycine max HOM05D003079 ORTHO05D003461 1.7e-39 167.5 342 38.3
Duzib213G0264 Durio zibethinus HOM05D003079 ORTHO05D003461 3.8e-39 166.4 317 36.9
ClCG10G003820 Citrullus lanatus HOM05D003079 ORTHO05D003461 5.0e-39 166.0 337 35.6
Sabra11G0137800 Salix brachista HOM05D003079 ORTHO05D003461 1.9e-38 164.1 348 37.1
MSTRG.13045 Avicennia marina HOM05D003079 ORTHO05D003461 4.2e-38 162.9 333 37.8
Eucgr.F03644 Eucalyptus grandis HOM05D003079 ORTHO05D003461 5.5e-38 162.5 343 39.4
Glyma.06G321400 Glycine max HOM05D003079 ORTHO05D003461 5.5e-38 162.5 345 37.7
MD11G1046100 Malus domestica HOM05D003079 ORTHO05D003461 9.3e-38 161.8 346 36.7
PGR083G0768 Punica granatum HOM05D003079 ORTHO05D003461 2.7e-37 160.2 337 38.9
Sed0022199 Sechium edule HOM05D003079 ORTHO05D003461 4.6e-37 159.5 337 35.0
MBI15_g44396_MAGBIO Magnolia biondii HOM05D003079 ORTHO05D003461 6.1e-37 159.1 340 38.2
GSVIVG01014846001 Vitis vinifera HOM05D003079 ORTHO05D003461 7.9e-37 158.7 334 37.7
MSTRG.16132 Avicennia marina HOM05D003079 ORTHO05D003461 1.3e-36 157.9 328 38.1
CiPaw.12G142900 Carya illinoinensis HOM05D003079 ORTHO05D003461 8.7e-36 155.2 281 38.1
CsaV3_3G003800 Cucumis sativus L. HOM05D003079 ORTHO05D003461 8.7e-36 155.2 298 36.9
vmacro11641 Vaccinium macrocarpon HOM05D003079 ORTHO05D003461 1.5e-35 154.5 346 37.6
PSO063G6668 Papaver somniferum HOM05D003079 ORTHO05D003461 3.7e-34 149.8 346 33.5
DCAR_013756 Daucus carota HOM05D003079 ORTHO05D003461 4.8e-34 149.4 341 38.7
PSO782G1655 Papaver somniferum HOM05D003079 ORTHO05D003461 4.1e-33 146.4 346 33.8
PGSC0003DMG400028881 Solanum tuberosum HOM05D003079 ORTHO05D003461 4.1e-33 146.4 108 80.6
Lj3g0020124 Lotus japonicus HOM05D003079 ORTHO05D003461 1.5e-32 144.4 349 36.1
Sc03g0011780 Simmondsia chinensis HOM05D003079 ORTHO05D003461 1.5e-32 144.4 329 34.7
Gohir.D11G286600 Gossypium hirsutum HOM05D003079 ORTHO05D003461 2.0e-32 144.1 347 34.0
Gorai.007G310000 Gossypium raimondii HOM05D003079 ORTHO05D003461 3.4e-32 143.3 347 34.0
Gohir.A11G276200 Gossypium hirsutum HOM05D003079 ORTHO05D003461 4.5e-32 142.9 347 33.4
SalBow8G1693 Salvia bowleyana HOM05D003079 ORTHO05D003461 7.7e-32 142.1 310 35.5
Psat5g231200 Pisum sativum HOM05D003079 ORTHO05D003461 1.3e-31 141.4 342 35.4
Sed0005838 Sechium edule HOM05D003079 ORTHO05D003461 2.9e-31 140.2 336 33.9
PGSC0003DMG400029886 Solanum tuberosum HOM05D003079 ORTHO05D003461 5.0e-31 139.4 78 92.3
MSTRG.14525 Avicennia marina HOM05D003079 ORTHO05D003461 6.5e-31 139.0 333 33.9
MD03G1043100 Malus domestica HOM05D003079 ORTHO05D003461 6.5e-31 139.0 328 35.7
VMungo1080G0483 Vigna mungo HOM05D003079 ORTHO05D003461 6.5e-31 139.0 313 38.7
Lj1A901G36 Lonicera japonica HOM05D003079 ORTHO05D003461 2.5e-30 137.1 338 35.2
arahy.Tifrunner.gnm1.ann1.WAW8B8 Arachis hypogaea HOM05D003079 ORTHO05D003461 3.2e-30 136.7 356 33.4
THA.LOC104811703 Tarenaya hassleriana HOM05D003079 ORTHO05D003461 7.2e-30 135.6 348 34.5
Migut.M01581 Erythranthe guttata HOM05D003079 ORTHO05D003461 1.2e-29 134.8 340 34.1
arahy.Tifrunner.gnm1.ann1.FC0SK2 Arachis hypogaea HOM05D003079 ORTHO05D003461 1.6e-29 134.4 363 32.5
Lalb_Chr04g0259441 Lupinus albus HOM05D003079 ORTHO05D003461 1.6e-29 134.4 339 38.1
Aqoxy4G02267 Aquilegia oxysepala HOM05D003079 ORTHO05D003461 2.1e-29 134.0 345 32.2
TPR.G16690 Trifolium pratense HOM05D003079 ORTHO05D003461 6.1e-29 132.5 342 34.5
vmacro09798 Vaccinium macrocarpon HOM05D003079 ORTHO05D003461 5.1e-28 129.4 473 29.4
DCAR_017612 Daucus carota HOM05D003079 ORTHO05D003461 1.1e-27 128.3 344 37.8
Actinidia30351 Actinidia chinensis HOM05D003079 ORTHO05D003461 5.7e-27 125.9 215 40.9
Rhsim04G0008000 Rhododendron simsii HOM05D003079 ORTHO05D003461 5.7e-27 125.9 373 32.4
SGA_v2.0_scaffold186G40233 Striga asiatica HOM05D003079 ORTHO05D003461 1.3e-26 124.8 336 34.2
Rhsim06G0235200 Rhododendron simsii HOM05D003079 ORTHO05D003461 2.2e-26 124.0 342 35.1
Oeu006261.2 Olea europaea HOM05D003079 ORTHO05D003461 3.7e-26 123.2 315 34.9
Cpa.g.sc12.64 Carica papaya HOM05D003079 ORTHO05D003461 6.9e-25 119.0 319 34.8
Migut.H01709 Erythranthe guttata HOM05D003079 ORTHO05D003461 1.2e-24 118.2 333 30.0
SGA_v2.0_scaffold7G03549 Striga asiatica HOM05D003079 ORTHO05D003461 3.4e-24 116.7 300 34.0
Lalb_Chr15g0079931 Lupinus albus HOM05D003079 ORTHO05D003461 4.5e-24 116.3 331 31.4
Oeu052026.1 Olea europaea HOM05D003079 ORTHO05D003461 2.2e-23 114.0 314 34.4
Thhalv10013313m.g Eutrema salsugineum HOM05D003079 ORTHO05D003461 3.8e-23 113.2 324 31.5
Oeu052884.2 Olea europaea HOM05D003079 ORTHO05D003461 3.8e-23 113.2 256 35.2
Atru.chr2.3897 Acer truncatum HOM05D003079 ORTHO05D003461 4.2e-22 109.8 326 34.4
SGA_v2.0_scaffold92G28159 Striga asiatica HOM05D003079 ORTHO05D003461 7.2e-22 109.0 313 35.5
Aqoxy7G02327 Aquilegia oxysepala HOM05D003079 ORTHO05D003461 2.1e-21 107.5 296 32.1
CARHR269610 Cardamine hirsuta HOM05D003079 ORTHO05D003461 2.3e-20 104.0 301 30.6
AUR62043120 Chenopodium quinoa HOM05D003079 ORTHO05D003461 2.3e-20 104.0 284 35.9
HPP92_022810 Vanilla planifolia HOM05D003079 ORTHO05D003461 2.3e-20 104.0 316 32.3
CARHR234020 Cardamine hirsuta HOM05D003079 ORTHO05D003461 3.9e-20 103.2 339 30.1
Carub.0007s1447 Capsella rubella HOM05D003079 ORTHO05D003461 5.1e-20 102.8 340 28.2
Oeu015272.1 Olea europaea HOM05D003079 ORTHO05D003461 6.7e-20 102.4 145 47.6
TAR626G1036 Trochodendron aralioides HOM05D003079 ORTHO05D003461 1.5e-19 101.3 252 32.9
BolC1t02168H Brassica oleracea HOM05D003079 ORTHO05D003461 7.4e-19 99.0 330 27.9
BcaC09g50710 Brassica carinata HOM05D003079 ORTHO05D003461 9.7e-19 98.6 329 28.6
COL.COLO4_07790 Corchorus olitorius HOM05D003079 ORTHO05D003461 9.7e-19 98.6 161 37.9
AL8G31840 Arabidopsis lyrata HOM05D003079 ORTHO05D003461 1.3e-18 98.2 329 31.9
C01p22370 Brassica napus HOM05D003079 ORTHO05D003461 2.2e-18 97.4 336 28.6
Aa31LG3G12120 Aethionema arabicum HOM05D003079 ORTHO05D003461 3.7e-18 96.7 327 29.4
AT5G56210 Arabidopsis thaliana HOM05D003079 ORTHO05D003461 3.7e-18 96.7 326 30.1
Thhalv10024990m.g Eutrema salsugineum HOM05D003079 ORTHO05D003461 4.8e-18 96.3 294 31.6
BraA01t01726Z Brassica rapa HOM05D003079 ORTHO05D003461 8.2e-18 95.5 329 28.6
HanXRQChr11g0335521 Helianthus annuus HOM05D003079 ORTHO05D003461 8.2e-18 95.5 338 28.1
Carub.0008s1653 Capsella rubella HOM05D003079 ORTHO05D003461 1.1e-17 95.1 332 30.7
AT4G26455 Arabidopsis thaliana HOM05D003079 ORTHO05D003461 1.4e-17 94.7 281 31.0
Sp6g18060 Schrenkiella parvula HOM05D003079 ORTHO05D003461 1.4e-17 94.7 283 31.4
AL7G26490 Arabidopsis lyrata HOM05D003079 ORTHO05D003461 4.1e-17 93.2 281 31.3
A01p17700 Brassica napus HOM05D003079 ORTHO05D003461 4.1e-17 93.2 329 28.3
BcaNung02417 Brassica carinata HOM05D003079 ORTHO05D003461 9.1e-17 92.0 344 29.1
ATR0751G103 Amborella trichopoda HOM05D003079 ORTHO05D003461 2.0e-16 90.9 129 43.4
Sp7g24370 Schrenkiella parvula HOM05D003079 ORTHO05D003461 2.0e-16 90.9 343 29.4
Medtr8g070940 Medicago truncatula HOM05D003079 ORTHO05D003461 3.5e-16 90.1 263 28.5
HPP92_007490 Vanilla planifolia HOM05D003079 ORTHO05D003461 1.0e-15 88.6 347 28.2
Lalb_Chr18g0048661 Lupinus albus HOM05D003079 ORTHO05D003461 3.8e-15 86.7 188 35.1
Os09g0481300 Oryza sativa ssp. japonica HOM05D003079 ORTHO05D003461 6.5e-15 85.9 271 28.4
PGSC0003DMG400015038 Solanum tuberosum HOM05D003079 ORTHO05D003461 6.5e-15 85.9 55 85.5
EL10Ac4g08434 Beta vulgaris HOM05D003079 ORTHO05D003461 3.2e-14 83.6 283 29.3
Zm00001eb101670 Zea mays HOM05D003079 ORTHO05D003461 3.2e-14 83.6 271 28.8
Zm00001eb316300 Zea mays HOM05D003079 ORTHO05D003461 5.5e-14 82.8 271 28.0
Actinidia03676 Actinidia chinensis HOM05D003079 ORTHO05D003461 6.1e-13 79.3 78 57.7
Hund22967 Selenicereus undatus HOM05D003079 ORTHO05D003461 2.6e-11 73.9 332 28.3
Lsat_1_v5_gn_7_115521 Lactuca sativa HOM05D003079 ORTHO05D003461 5.7e-11 72.8 253 30.8
AUR62020809 Chenopodium quinoa HOM05D004608 ORTHO05D006533 7.4e-11 72.4 244 33.2
BcaB08g35981 Brassica carinata HOM05D003079 ORTHO05D003461 9.7e-11 72.0 297 29.0
Ah.06g180930 Amaranthus hybridus HOM05D003079 ORTHO05D003461 2.2e-10 70.9 289 29.8
BcaC04g20138 Brassica carinata HOM05D003079 ORTHO05D003461 3.7e-10 70.1 285 27.4
BolC9t57600H Brassica oleracea HOM05D003079 ORTHO05D003461 3.7e-10 70.1 285 27.4
ECA236G4881 Erigeron canadensis HOM05D003079 ORTHO05D003461 3.7e-10 70.1 243 29.2
Actinidia03677 Actinidia chinensis HOM05D003079 ORTHO05D003461 6.3e-10 69.3 111 44.1
unitig_21.g20258 Utricularia gibba HOM05D003079 ORTHO05D003461 1.1e-09 68.6 333 28.2
COL.COLO4_07791 Corchorus olitorius HOM05D003079 ORTHO05D003461 1.8e-09 67.8 97 43.3
AL3G25210 Arabidopsis lyrata HOM05D003079 ORTHO05D003461 3.1e-09 67.0 328 28.7
A10p13440 Brassica napus HOM05D003079 ORTHO05D003461 5.3e-09 66.2 287 27.2
BraA10t43447Z Brassica rapa HOM05D003079 ORTHO05D003461 5.3e-09 66.2 287 27.2
C09p47450 Brassica napus HOM05D003079 ORTHO05D003461 7.0e-09 65.9 287 27.2
AUR62018863 Chenopodium quinoa HOM05D000686 ORTHO05D000512 9.1e-09 65.5 239 31.0
Sp3g11560 Schrenkiella parvula HOM05D003079 ORTHO05D003461 9.1e-09 65.5 311 26.4
Solyc01g056200.1 Solanum lycopersicum HOM05D003079 ORTHO05D003461 2.0e-08 64.3 42 81.0
Actinidia30350 Actinidia chinensis HOM05D003079 ORTHO05D003461 4.5e-08 63.2 91 48.4
ECA240G3294 Erigeron canadensis HOM05D003079 ORTHO05D003461 4.5e-08 63.2 331 26.9
Lsat_1_v5_gn_9_88621 Lactuca sativa HOM05D003079 ORTHO05D003461 4.5e-08 63.2 290 29.0
Aa31LG8G580 Aethionema arabicum HOM05D003079 ORTHO05D003461 2.2e-07 60.8 314 26.4
THA.LOC104815679 Tarenaya hassleriana HOM05D003079 ORTHO05D003461 2.2e-07 60.8 329 25.2
TPR.G28965 Trifolium pratense HOM05D003079 ORTHO05D003461 2.2e-07 60.8 214 30.4
Psat4g111200 Pisum sativum HOM05D003079 ORTHO05D003461 2.9e-07 60.5 232 27.6
Thhalv10020643m.g Eutrema salsugineum HOM05D003079 ORTHO05D003461 1.9e-06 57.8 313 25.2
C01p51720 Brassica napus HOM05D003079 ORTHO05D003461 2.5e-06 57.4 284 26.1
CDE02G1968 Ceratophyllum demersum HOM05D000308 ORTHO05D003461 2.5e-06 57.4 250 28.8
A03p38160 Brassica napus HOM05D003079 ORTHO05D003461 3.2e-06 57.0 313 27.2
BraA03t12969Z Brassica rapa HOM05D003079 ORTHO05D003461 3.2e-06 57.0 313 27.2
unitig_744.g24499 Utricularia gibba HOM05D003079 ORTHO05D003461 3.2e-06 57.0 291 26.8
BcaC09g48303 Brassica carinata HOM05D003079 ORTHO05D003461 5.5e-06 56.2 284 26.4
BolC1t05117H Brassica oleracea HOM05D003079 ORTHO05D003461 5.5e-06 56.2 284 26.4
TAR626G0479 Trochodendron aralioides HOM05D003079 ORTHO05D003461 5.5e-06 56.2 101 41.6


User provided reference genes

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