Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g066160.1 Solanum lycopersicum HOM05D011325 ORTHO05D000630 2.3e-169 599.0 332 100.0
Sopen07g034340 Solanum pennellii HOM05D011325 ORTHO05D000630 6.6e-153 544.3 339 93.2
PGSC0003DMG400022147 Solanum tuberosum HOM05D008543 ORTHO05D000630 2.1e-119 433.0 352 73.6
Nitab4.5_0000152g0060 Nicotiana tabacum HOM05D008543 ORTHO05D000630 1.5e-59 234.2 421 43.2
CAN.G623.74 Capsicum annuum HOM05D008543 ORTHO05D000630 4.4e-56 222.6 359 47.9
Nitab4.5_0009408g0010 Nicotiana tabacum HOM05D008543 ORTHO05D000630 2.0e-53 213.8 384 44.3
Peaxi162Scf00232g00062 Petunia axillaris HOM05D008543 ORTHO05D000630 8.3e-39 165.2 449 36.5
Dinv40916 Davidia involucrata HOM05D008543 ORTHO05D000630 4.7e-34 149.4 331 35.6
Cc05_g15710 Coffea canephora HOM05D000174 ORTHO05D000630 5.2e-33 146.0 310 37.1
Oeu006263.1 Olea europaea HOM05D008543 ORTHO05D000630 5.4e-30 136.0 444 30.0
Actinidia03675 Actinidia chinensis HOM05D000174 ORTHO05D000630 2.1e-26 124.0 394 35.8
Oeu052885.1 Olea europaea HOM05D008543 ORTHO05D000630 2.8e-26 123.6 399 28.1
GSVIVG01014844001 Vitis vinifera HOM05D000174 ORTHO05D000630 9.0e-25 118.6 312 32.1
Oeu052027.2 Olea europaea HOM05D000784 ORTHO05D000116 1.9e-22 110.9 325 32.9
Rhsim06G0235100 Rhododendron simsii HOM05D000174 ORTHO05D000630 1.2e-21 108.2 385 28.3
Rhsim04G0007800 Rhododendron simsii HOM05D000174 ORTHO05D000630 1.0e-20 105.1 353 35.7
Actinidia30352 Actinidia chinensis HOM05D008543 ORTHO05D000630 1.7e-20 104.4 393 27.5
CSS0041839 Camellia sinensis var. sinensis HOM05D008543 ORTHO05D000630 1.7e-20 104.4 442 26.7
HanXRQChr03g0079361 Helianthus annuus HOM05D000174 ORTHO05D000630 1.9e-19 100.9 356 29.8
HanXRQChr13g0409261 Helianthus annuus HOM05D000174 ORTHO05D000630 2.5e-19 100.5 296 33.1
Aqoxy4G02266 Aquilegia oxysepala HOM05D000174 ORTHO05D000630 7.3e-19 99.0 325 30.5
CSS0016853 Camellia sinensis var. sinensis HOM05D000174 ORTHO05D000630 6.2e-18 95.9 388 26.8
Nitab4.5_0003570g0030 Nicotiana tabacum HOM05D008543 ORTHO05D000630 6.2e-18 95.9 227 35.2
Oeu032035.1 Olea europaea HOM05D011325 ORTHO05D000630 4.0e-17 93.2 300 31.0
Nitab4.5_0000205g0040 Nicotiana tabacum HOM05D059491 ORTHO05D000630 6.9e-17 92.4 396 27.8
Peaxi162Scf00234g00042 Petunia axillaris HOM05D000174 ORTHO05D000630 1.5e-16 91.3 329 28.6
PGSC0003DMG400034376 Solanum tuberosum HOM05D000174 ORTHO05D000630 2.6e-16 90.5 345 27.2
THA.LOC104817725 Tarenaya hassleriana HOM05D000174 ORTHO05D000630 1.3e-15 88.2 293 28.0
Cpa.g.sc12.65 Carica papaya HOM05D000174 ORTHO05D000630 1.7e-15 87.8 301 26.6
SGA_v2.0_scaffold79G25559 Striga asiatica HOM05D011325 ORTHO05D000630 1.7e-15 87.8 340 29.4
Cpa.g.sc12.67 Carica papaya HOM05D000174 ORTHO05D000630 2.9e-15 87.0 323 28.5
CiPaw.12G142600 Carya illinoinensis HOM05D000174 ORTHO05D000630 3.8e-15 86.7 393 24.7
Lj1C901G3 Lonicera japonica HOM05D000174 ORTHO05D000630 3.8e-15 86.7 313 34.8
Sopen11g029860 Solanum pennellii HOM05D000174 ORTHO05D000630 1.4e-14 84.7 339 26.0
Lsat_1_v5_gn_9_88600 Lactuca sativa HOM05D000174 ORTHO05D000630 1.9e-14 84.3 422 26.3
Nitab4.5_0025069g0010 Nicotiana tabacum HOM05D059491 ORTHO05D000630 1.9e-14 84.3 313 30.7
Actinidia23303 Actinidia chinensis HOM05D000174 ORTHO05D000630 2.4e-14 84.0 187 37.4
SGA_v2.0_scaffold79G25561 Striga asiatica HOM05D011325 ORTHO05D000630 2.4e-14 84.0 345 33.0
ECA240G0792 Erigeron canadensis HOM05D000174 ORTHO05D000630 4.2e-14 83.2 335 27.5
THA.LOC104811702 Tarenaya hassleriana HOM05D000174 ORTHO05D000630 9.3e-14 82.0 314 27.4
Eucgr.F03645 Eucalyptus grandis HOM05D008543 ORTHO05D000630 2.1e-13 80.9 409 23.7
Solyc11g072210.1 Solanum lycopersicum HOM05D000174 ORTHO05D000630 6.0e-13 79.3 343 25.7
CiPaw.11G210700 Carya illinoinensis HOM05D000174 ORTHO05D000630 7.9e-13 79.0 487 23.8
QL08p000516 Quercus lobata HOM05D000174 ORTHO05D000630 1.0e-12 78.6 360 25.3
Cc01_g06930 Coffea canephora HOM05D000174 ORTHO05D000630 1.8e-12 77.8 304 25.0
MD11G1046000 Malus domestica HOM05D000174 ORTHO05D000630 3.0e-12 77.0 424 25.5
MBI14_g12738_MAGBIO Magnolia biondii HOM05D000174 ORTHO05D000630 6.7e-12 75.9 342 26.6
FAN11G0349 Fragaria x ananassa HOM05D000174 ORTHO05D000630 1.1e-11 75.1 342 26.3
MD03G1043000 Malus domestica HOM05D000174 ORTHO05D000630 1.1e-11 75.1 396 25.0
Cfa016961 Carpinus fangiana HOM05D000174 ORTHO05D000630 1.5e-11 74.7 483 25.3
Sc16g0010820 Simmondsia chinensis HOM05D008543 ORTHO05D000630 1.5e-11 74.7 340 26.2
CDE06G2287 Ceratophyllum demersum HOM05D056667 ORTHO05D000630 2.5e-11 73.9 423 27.0
CANSAT54G2384 Cannabis sativa HOM05D008543 ORTHO05D000630 3.3e-11 73.6 261 28.0
FvH4_3g41600 Fragaria vesca HOM05D000174 ORTHO05D000630 4.3e-11 73.2 342 26.0
CDE03G0095 Ceratophyllum demersum HOM05D056667 ORTHO05D000630 7.4e-11 72.4 401 24.7
FAN21G0599 Fragaria x ananassa HOM05D000174 ORTHO05D000630 1.3e-10 71.6 337 26.1
CSS0027724 Camellia sinensis var. sinensis HOM05D008543 ORTHO05D000630 1.6e-10 71.2 195 30.3
TAR627G0908 Trochodendron aralioides HOM05D000174 ORTHO05D000630 1.6e-10 71.2 300 26.3
CAN.G1085.7 Capsicum annuum HOM05D000174 ORTHO05D000630 2.1e-10 70.9 296 29.4
FAN25G3117 Fragaria x ananassa HOM05D000174 ORTHO05D000630 2.1e-10 70.9 339 26.0
FAN16G0761 Fragaria x ananassa HOM05D000174 ORTHO05D000630 2.8e-10 70.5 346 25.4
Prupe.6G035400 Prunus persica HOM05D000174 ORTHO05D000630 2.8e-10 70.5 452 22.6
TAR636G0894 Trochodendron aralioides HOM05D008543 ORTHO05D000630 2.8e-10 70.5 365 25.5
Oeu025932.1 Olea europaea HOM05D011325 ORTHO05D000630 3.7e-10 70.1 364 25.8
SGA_v2.0_scaffold7G03548 Striga asiatica HOM05D008543 ORTHO05D000630 3.7e-10 70.1 195 29.2
BcaC03g14238 Brassica carinata HOM05D000174 ORTHO05D000630 4.8e-10 69.7 308 33.4
Ah.06g195070 Amaranthus hybridus HOM05D000174 ORTHO05D000630 6.2e-10 69.3 273 38.1
Sed0000150 Sechium edule HOM05D014059 ORTHO05D019015 8.1e-10 68.9 289 27.3
PGR031G1920 Punica granatum HOM05D000174 ORTHO05D000630 1.1e-09 68.6 301 32.9
RcHm_v2.0_Chr5g0074621 Rosa chinensis HOM05D000174 ORTHO05D000630 2.4e-09 67.4 345 25.2
C02p15430 Brassica napus HOM05D000174 ORTHO05D000630 4.0e-09 66.6 266 35.0
BolC2t07657H Brassica oleracea HOM05D000174 ORTHO05D000630 4.0e-09 66.6 266 35.0
arahy.Tifrunner.gnm1.ann1.1FA9DV Arachis hypogaea HOM05D008543 ORTHO05D000630 5.3e-09 66.2 335 23.9
Nn1g07631 Nelumbo nucifera HOM05D000174 ORTHO05D000630 5.3e-09 66.2 343 25.1
Haze_23538 Corylus avellana HOM05D019813 ORTHO05D000630 1.5e-08 64.7 303 32.7
Haze_09916 Corylus avellana HOM05D000174 ORTHO05D000630 2.0e-08 64.3 411 24.6
Nn1g07630 Nelumbo nucifera HOM05D000174 ORTHO05D000630 2.0e-08 64.3 395 23.5
BcaB08g35982 Brassica carinata HOM05D000174 ORTHO05D000630 2.6e-08 63.9 319 23.8
Gohir.D08G041000 Gossypium hirsutum HOM05D000174 ORTHO05D001526 2.6e-08 63.9 253 27.3
Sp6g18050 Schrenkiella parvula HOM05D000174 ORTHO05D000630 2.6e-08 63.9 277 25.6
TWI75G0649 Tripterygium wilfordii HOM05D008543 ORTHO05D000630 3.4e-08 63.5 324 25.0
TAR375G0447 Trochodendron aralioides HOM05D001867 ORTHO05D001708 3.4e-08 63.5 238 30.3
ClCG10G003920 Citrullus lanatus HOM05D014059 ORTHO05D019015 4.5e-08 63.2 289 24.9
arahy.Tifrunner.gnm1.ann1.YK7I6N Arachis hypogaea HOM05D008543 ORTHO05D000630 7.6e-08 62.4 332 24.7
CsaV3_3G003770 Cucumis sativus L. HOM05D014059 ORTHO05D001526 7.6e-08 62.4 299 23.4
FvH4_7g10970 Fragaria vesca HOM05D000174 ORTHO05D001526 7.6e-08 62.4 265 25.7
Gohir.A08G030100 Gossypium hirsutum HOM05D000174 ORTHO05D001526 7.6e-08 62.4 251 26.7
Lalb_Chr09g0334661 Lupinus albus HOM05D010587 ORTHO05D000630 7.6e-08 62.4 353 24.1
AL8G31830 Arabidopsis lyrata HOM05D000174 ORTHO05D000630 9.9e-08 62.0 340 23.5
CSS0008188 Camellia sinensis var. sinensis HOM05D000174 ORTHO05D000630 9.9e-08 62.0 114 38.6
Nitab4.5_0002881g0100 Nicotiana tabacum HOM05D001658 ORTHO05D001406 9.9e-08 62.0 314 24.8
MSTRG.28174 Avicennia marina HOM05D001867 ORTHO05D001708 1.7e-07 61.2 250 28.0
Gorai.004G039900 Gossypium raimondii HOM05D000174 ORTHO05D001526 1.7e-07 61.2 251 26.7
QL07p014639 Quercus lobata HOM05D008543 ORTHO05D000630 2.2e-07 60.8 328 24.4
Solyc01g090840.3 Solanum lycopersicum HOM05D001867 ORTHO05D001708 2.2e-07 60.8 256 28.9
A10p13430 Brassica napus HOM05D000174 ORTHO05D000630 2.9e-07 60.5 272 24.6
BraA10t43446Z Brassica rapa HOM05D000174 ORTHO05D000630 2.9e-07 60.5 272 24.6
Carub.0008s1652 Capsella rubella HOM05D000174 ORTHO05D000630 2.9e-07 60.5 322 24.2
BcaC04g20137 Brassica carinata HOM05D000174 ORTHO05D000630 3.8e-07 60.1 306 24.8
C09p47440 Brassica napus HOM05D000174 ORTHO05D000630 3.8e-07 60.1 312 24.4
BolC9t57599H Brassica oleracea HOM05D000174 ORTHO05D000630 3.8e-07 60.1 306 24.8
Cfa010152 Carpinus fangiana HOM05D019813 ORTHO05D000630 3.8e-07 60.1 324 30.2
MELO3C014059.2 Cucumis melo HOM05D014059 ORTHO05D001526 3.8e-07 60.1 293 24.6
DCAR_017611 Daucus carota HOM05D000174 ORTHO05D000630 3.8e-07 60.1 94 36.2
FAN03G0186 Fragaria x ananassa HOM05D000174 ORTHO05D001526 3.8e-07 60.1 265 24.9
FAN06G2490 Fragaria x ananassa HOM05D000174 ORTHO05D001526 3.8e-07 60.1 265 24.9
FAN10G2820 Fragaria x ananassa HOM05D000174 ORTHO05D001526 3.8e-07 60.1 265 24.9
Actinidia10593 Actinidia chinensis HOM05D000174 ORTHO05D000630 4.9e-07 59.7 413 23.2
FAN06G2030 Fragaria x ananassa HOM05D000174 ORTHO05D001526 4.9e-07 59.7 267 25.1
Phvul.006G020000 Phaseolus vulgaris HOM05D022580 ORTHO05D000630 4.9e-07 59.7 128 34.4
FAN10G2303 Fragaria x ananassa HOM05D000174 ORTHO05D001526 8.4e-07 58.9 264 25.4
Glyma.16G102000 Glycine max HOM05D008543 ORTHO05D000630 8.4e-07 58.9 315 24.8
Lj7P537T47 Lonicera japonica HOM05D001867 ORTHO05D001708 8.4e-07 58.9 243 25.1
QL01p020579 Quercus lobata HOM05D008543 ORTHO05D000630 8.4e-07 58.9 414 24.4
RcHm_v2.0_Chr1g0348911 Rosa chinensis HOM05D000174 ORTHO05D001526 8.4e-07 58.9 270 25.2
AT5G56200 Arabidopsis thaliana HOM05D000174 ORTHO05D000630 1.1e-06 58.5 357 22.1
C08p35530 Brassica napus HOM05D001867 ORTHO05D001708 1.4e-06 58.2 258 26.0
Sed0007909 Sechium edule HOM05D014059 ORTHO05D019015 1.4e-06 58.2 290 24.1
PGSC0003DMG400026020 Solanum tuberosum HOM05D001867 ORTHO05D001708 2.5e-06 57.4 256 30.5
BcaC07g40579 Brassica carinata HOM05D001867 ORTHO05D001708 3.2e-06 57.0 251 25.5
VMungo0540G2495 Vigna mungo HOM05D022580 ORTHO05D000630 3.2e-06 57.0 459 22.0
BolC3t14028H Brassica oleracea HOM05D000174 ORTHO05D000630 4.2e-06 56.6 301 33.2
Duzib170G0186 Durio zibethinus HOM05D008543 ORTHO05D000630 4.2e-06 56.6 290 26.9
FAN01G3149 Fragaria x ananassa HOM05D000174 ORTHO05D001526 4.2e-06 56.6 303 24.1
Atru.chr2.3896 Acer truncatum HOM05D000174 ORTHO05D000630 5.5e-06 56.2 325 27.4
Lalb_Chr15g0080221 Lupinus albus HOM05D008543 ORTHO05D000630 5.5e-06 56.2 392 21.4
Nn6g33954 Nelumbo nucifera HOM05D001867 ORTHO05D001708 5.5e-06 56.2 292 27.4
AT3G60580 Arabidopsis thaliana HOM05D001867 ORTHO05D001708 7.1e-06 55.8 237 26.6
EL10Ac4g10054 Beta vulgaris HOM05D008543 ORTHO05D000630 7.1e-06 55.8 338 25.7
Glyma.09G230200 Glycine max HOM05D001867 ORTHO05D001708 7.1e-06 55.8 271 21.4
Hma1.2p1_0316F.1_g123130 Hydrangea macrophylla HOM05D001867 ORTHO05D001708 7.1e-06 55.8 260 25.0
LjContig00564g0020168 Lotus japonicus HOM05D025675 ORTHO05D000630 7.1e-06 55.8 358 29.3
Phvul.003G273600 Phaseolus vulgaris HOM05D008543 ORTHO05D000630 7.1e-06 55.8 288 26.0
AL5G42890 Arabidopsis lyrata HOM05D001867 ORTHO05D001708 9.3e-06 55.5 242 25.6


User provided reference genes

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