Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g066150.1 Solanum lycopersicum HOM05D006092 ORTHO05D007508 2.0e-77 292.4 147 100.0
Sopen07g034330 Solanum pennellii HOM05D006092 ORTHO05D007508 1.7e-76 289.3 147 99.3
PGSC0003DMG400022249 Solanum tuberosum HOM05D006092 ORTHO05D007508 6.4e-76 287.3 147 98.0
CAN.G623.73 Capsicum annuum HOM05D006092 ORTHO05D007508 4.6e-66 254.6 148 89.2
SalBow8G3834 Salvia bowleyana HOM05D006092 ORTHO05D007508 1.1e-64 250.0 149 87.2
Oeu013004.1 Olea europaea HOM05D006092 ORTHO05D007508 2.8e-63 245.4 149 82.6
Oeu006265.1 Olea europaea HOM05D006092 ORTHO05D007508 1.4e-62 243.0 152 82.2
Nitab4.5_0000611g0110 Nicotiana tabacum HOM05D006092 ORTHO05D007508 3.1e-62 241.9 149 83.9
Nitab4.5_0000611g0120 Nicotiana tabacum HOM05D006092 ORTHO05D007508 3.1e-62 241.9 149 84.6
Migut.M01583 Erythranthe guttata HOM05D006092 ORTHO05D007508 5.3e-62 241.1 151 82.1
Nitab4.5_0001622g0160 Nicotiana tabacum HOM05D006092 ORTHO05D007508 5.3e-62 241.1 149 85.2
Lsat_1_v5_gn_5_381 Lactuca sativa HOM05D006092 ORTHO05D007508 1.0e-57 226.9 149 82.6
SGA_v2.0_scaffold186G40234 Striga asiatica HOM05D006092 ORTHO05D007508 1.8e-57 226.1 148 79.1
HanXRQChr08g0232881 Helianthus annuus HOM05D006092 ORTHO05D007508 3.9e-57 224.9 147 78.2
unitig_37.g11908 Utricularia gibba HOM05D006092 ORTHO05D007508 6.7e-57 224.2 148 78.4
ECA246G4981 Erigeron canadensis HOM05D006092 ORTHO05D007508 2.5e-56 222.2 148 78.4
GSVIVG01014842001 Vitis vinifera HOM05D006092 ORTHO05D007508 1.3e-55 219.9 162 72.2
Nn1g07635 Nelumbo nucifera HOM05D006092 ORTHO05D007508 1.1e-54 216.9 171 73.1
HanXRQChr05g0160351 Helianthus annuus HOM05D006092 ORTHO05D007508 1.4e-54 216.5 148 75.7
unitig_92.g28271 Utricularia gibba HOM05D006092 ORTHO05D007508 9.1e-54 213.8 148 75.7
Rhsim04G0007400 Rhododendron simsii HOM05D006092 ORTHO05D007508 2.0e-53 212.6 148 75.7
Nitab4.5_0000611g0130 Nicotiana tabacum HOM05D006092 ORTHO05D007508 3.4e-53 211.8 141 79.4
Atru.chr2.3894 Acer truncatum HOM05D006092 ORTHO05D007508 7.7e-53 210.7 138 77.5
PSO063G2976 Papaver somniferum HOM05D006092 ORTHO05D007508 1.0e-52 210.3 157 72.6
PSO782G4285 Papaver somniferum HOM05D006092 ORTHO05D007508 1.0e-52 210.3 157 72.6
CsaV3_3G004330 Cucumis sativus L. HOM05D006092 ORTHO05D007508 1.7e-52 209.5 152 69.7
MELO3C014124.2 Cucumis melo HOM05D006092 ORTHO05D007508 2.9e-52 208.8 152 69.7
Sed0026101 Sechium edule HOM05D006092 ORTHO05D007508 5.0e-52 208.0 136 78.7
ClCG10G004510 Citrullus lanatus HOM05D006092 ORTHO05D007508 8.5e-52 207.2 152 69.7
Cpa.g.sc12.69 Carica papaya HOM05D006092 ORTHO05D007508 1.1e-51 206.8 157 70.1
Potri.011G168700 Populus trichocarpa HOM05D006092 ORTHO05D007508 7.2e-51 204.1 137 77.4
Cfa016959 Carpinus fangiana HOM05D006092 ORTHO05D007508 9.4e-51 203.8 137 78.1
Gorai.009G454900 Gossypium raimondii HOM05D006092 ORTHO05D007508 9.4e-51 203.8 141 73.8
Thecc.07G001800 Theobroma cacao HOM05D006092 ORTHO05D007508 9.4e-51 203.8 141 75.2
Carub.0001s4419 Capsella rubella HOM05D006092 ORTHO05D007508 1.2e-50 203.4 138 77.5
Gohir.A04G001100 Gossypium hirsutum HOM05D006092 ORTHO05D007508 1.2e-50 203.4 138 74.6
Sabra11G0138000 Salix brachista HOM05D006092 ORTHO05D007508 1.2e-50 203.4 137 76.6
Lj3g0000125 Lotus japonicus HOM05D006092 ORTHO05D007508 1.6e-50 203.0 139 76.3
Sabra16G0320400 Salix brachista HOM05D006092 ORTHO05D007508 1.6e-50 203.0 137 78.1
Aa31LG10G560 Aethionema arabicum HOM05D006092 ORTHO05D007508 2.1e-50 202.6 142 74.6
Potri.001G471900 Populus trichocarpa HOM05D006092 ORTHO05D007508 2.1e-50 202.6 137 77.4
Aqoxy4G02265 Aquilegia oxysepala HOM05D006092 ORTHO05D007508 2.7e-50 202.2 139 77.0
BcaB04g16937 Brassica carinata HOM05D006092 ORTHO05D007508 2.7e-50 202.2 138 74.6
BcaC08g44210 Brassica carinata HOM05D006092 ORTHO05D007508 2.7e-50 202.2 138 76.1
C06p16180 Brassica napus HOM05D006092 ORTHO05D007508 2.7e-50 202.2 138 76.1
BolC6t36815H Brassica oleracea HOM05D006092 ORTHO05D007508 2.7e-50 202.2 138 76.1
CDE11G0224 Ceratophyllum demersum HOM05D006092 ORTHO05D007508 3.6e-50 201.8 165 66.7
Gohir.A13G128600 Gossypium hirsutum HOM05D006092 ORTHO05D007508 3.6e-50 201.8 141 73.0
A05p17350 Brassica napus HOM05D006092 ORTHO05D007508 4.7e-50 201.4 138 75.4
BraA05t20631Z Brassica rapa HOM05D006092 ORTHO05D007508 4.7e-50 201.4 138 75.4
CDE05G1532 Ceratophyllum demersum HOM05D006092 ORTHO05D007508 4.7e-50 201.4 165 66.7
MBI15_g47946_MAGBIO Magnolia biondii HOM05D006092 ORTHO05D007508 4.7e-50 201.4 166 67.5
MD03G1042800 Malus domestica HOM05D006092 ORTHO05D007508 4.7e-50 201.4 164 67.7
Psat5g231800 Pisum sativum HOM05D006092 ORTHO05D007508 4.7e-50 201.4 138 76.8
BcaB02g10807 Brassica carinata HOM05D006092 ORTHO05D007508 6.1e-50 201.1 138 75.4
Prupe.6G035200 Prunus persica HOM05D006092 ORTHO05D007508 6.1e-50 201.1 137 75.2
Glyma.06G321900 Glycine max HOM05D006092 ORTHO05D007508 1.0e-49 200.3 137 73.7
Phvul.005G004000 Phaseolus vulgaris HOM05D006092 ORTHO05D007508 1.0e-49 200.3 138 74.6
Sc07g0002210 Simmondsia chinensis HOM05D006092 ORTHO05D007508 1.0e-49 200.3 139 74.1
A08p00380 Brassica napus HOM05D006092 ORTHO05D007508 1.4e-49 199.9 138 74.6
BraA08t32097Z Brassica rapa HOM05D006092 ORTHO05D007508 1.4e-49 199.9 138 74.6
BcaC08g43644 Brassica carinata HOM05D006092 ORTHO05D007508 1.8e-49 199.5 138 74.6
C03p93010 Brassica napus HOM05D006092 ORTHO05D007508 1.8e-49 199.5 138 74.6
C06p10630 Brassica napus HOM05D006092 ORTHO05D007508 1.8e-49 199.5 138 74.6
BolC6t36143H Brassica oleracea HOM05D006092 ORTHO05D007508 1.8e-49 199.5 138 74.6
Glyma.04G112800 Glycine max HOM05D006092 ORTHO05D007508 1.8e-49 199.5 137 74.5
BcaC01g01548 Brassica carinata HOM05D006092 ORTHO05D007508 2.3e-49 199.1 138 74.6
BolC3t21605H Brassica oleracea HOM05D006092 ORTHO05D007508 2.3e-49 199.1 138 74.6
Gohir.D13G132000 Gossypium hirsutum HOM05D006092 ORTHO05D007508 2.3e-49 199.1 141 72.3
THA.LOC104810303 Tarenaya hassleriana HOM05D006092 ORTHO05D007508 2.3e-49 199.1 139 74.8
A06p00060 Brassica napus HOM05D006092 ORTHO05D007508 3.0e-49 198.7 138 74.6
BraA06t23221Z Brassica rapa HOM05D006092 ORTHO05D007508 3.0e-49 198.7 138 74.6
BcaB07g33193 Brassica carinata HOM05D006092 ORTHO05D007508 3.9e-49 198.4 138 73.9
ATR0751G135 Amborella trichopoda HOM05D006092 ORTHO05D007508 5.1e-49 198.0 166 66.3
Ciclev10009769m.g Citrus clementina HOM05D006092 ORTHO05D007508 5.1e-49 198.0 144 74.3
Lalb_Chr18g0048631 Lupinus albus HOM05D006092 ORTHO05D007508 5.1e-49 198.0 141 71.6
TPR.G16714 Trifolium pratense HOM05D006092 ORTHO05D007508 5.1e-49 198.0 141 73.0
Gorai.013G148000 Gossypium raimondii HOM05D006092 ORTHO05D007508 6.7e-49 197.6 141 71.6
MBI15_g47073_MAGBIO Magnolia biondii HOM05D006092 ORTHO05D007508 6.7e-49 197.6 140 74.3
QL08p000538 Quercus lobata HOM05D006092 ORTHO05D007508 6.7e-49 197.6 138 73.2
VMungo1080G0991 Vigna mungo HOM05D006092 ORTHO05D007508 6.7e-49 197.6 136 74.3
Manes.01G006400 Manihot esculenta HOM05D006092 ORTHO05D007508 8.8e-49 197.2 154 68.8
RcHm_v2.0_Chr5g0074661 Rosa chinensis HOM05D006092 ORTHO05D007508 1.1e-48 196.8 137 73.7
Thhalv10011835m.g Eutrema salsugineum HOM05D006092 ORTHO05D007508 1.5e-48 196.4 139 74.1
AL1G63740 Arabidopsis lyrata HOM05D006092 ORTHO05D007508 2.0e-48 196.1 139 74.1
CARHR045350 Cardamine hirsuta HOM05D006092 ORTHO05D007508 2.0e-48 196.1 139 74.1
FAN25G2470 Fragaria x ananassa HOM05D006092 ORTHO05D007508 2.0e-48 196.1 137 73.7
Eucgr.F03646 Eucalyptus grandis HOM05D006092 ORTHO05D007508 2.6e-48 195.7 139 74.8
PGR031G3987 Punica granatum HOM05D006092 ORTHO05D007508 2.6e-48 195.7 137 75.2
Ah.04g149440 Amaranthus hybridus HOM05D006092 ORTHO05D007508 3.3e-48 195.3 142 70.4
COL.COLO4_07787 Corchorus olitorius HOM05D006092 ORTHO05D007508 3.3e-48 195.3 102 92.2
AT1G55670 Arabidopsis thaliana HOM05D006092 ORTHO05D007508 4.4e-48 194.9 139 73.4
EL10Ac3g07451 Beta vulgaris HOM05D006092 ORTHO05D007508 4.4e-48 194.9 138 71.7
Haze_09914 Corylus avellana HOM05D006092 ORTHO05D007508 4.4e-48 194.9 135 76.3
Sed0012341 Sechium edule HOM05D006092 ORTHO05D007508 7.4e-48 194.1 109 85.3
AUR62020866 Chenopodium quinoa HOM05D006092 ORTHO05D007508 9.7e-48 193.7 107 86.0
Lj8P183T26 Lonicera japonica HOM05D006092 ORTHO05D007508 1.3e-47 193.4 108 88.0
THA.LOC104822703 Tarenaya hassleriana HOM05D006092 ORTHO05D007508 1.3e-47 193.4 140 74.3
FvH4_3g41620 Fragaria vesca HOM05D006092 ORTHO05D007508 1.7e-47 193.0 137 73.7
FAN11G0712 Fragaria x ananassa HOM05D006092 ORTHO05D007508 1.7e-47 193.0 137 73.7
Dinv40914 Davidia involucrata HOM05D006092 ORTHO05D007508 2.2e-47 192.6 147 68.7
CANSAT11G0425 Cannabis sativa HOM05D006092 ORTHO05D007508 3.7e-47 191.8 140 75.0
AUR62018553 Chenopodium quinoa HOM05D006092 ORTHO05D007508 4.8e-47 191.4 103 87.4
MBI14_g12737_MAGBIO Magnolia biondii HOM05D006092 ORTHO05D007508 4.8e-47 191.4 168 63.1
Os09g0481200 Oryza sativa ssp. japonica HOM05D006092 ORTHO05D007508 8.2e-47 190.7 145 66.2
Zm00001eb316290 Zea mays HOM05D006092 ORTHO05D007508 1.8e-46 189.5 144 67.4
arahy.Tifrunner.gnm1.ann1.4PD0PP Arachis hypogaea HOM05D006092 ORTHO05D007508 3.1e-46 188.7 154 66.9
TWI38G1372 Tripterygium wilfordii HOM05D006092 ORTHO05D007508 3.1e-46 188.7 139 70.5
TWI39G1159 Tripterygium wilfordii HOM05D006092 ORTHO05D007508 5.3e-46 188.0 139 70.5
CARHR087970 Cardamine hirsuta HOM05D006092 ORTHO05D007508 4.5e-45 184.9 111 82.9
HPP92_022812 Vanilla planifolia HOM05D006092 ORTHO05D007508 3.8e-44 181.8 104 83.7
Zm00001eb101660 Zea mays HOM05D006092 ORTHO05D007508 1.1e-43 180.3 145 64.1
Medtr3g010000 Medicago truncatula HOM05D006092 ORTHO05D007508 6.1e-42 174.5 142 66.2
SEGI_13197 Sequoiadendron giganteum HOM05D006092 ORTHO05D007508 1.0e-41 173.7 159 62.3
PGSC0003DMG400006702 Solanum tuberosum HOM05D006092 ORTHO05D007508 2.0e-37 159.5 115 74.8
SMO353G0046 Selaginella moellendorffii HOM05D006092 ORTHO05D007508 1.4e-33 146.7 114 62.3
CiPaw.11G210500 Carya illinoinensis HOM05D006092 ORTHO05D007508 5.2e-33 144.8 136 58.8
Pp3c15_5850 Physcomitrium patens HOM05D006092 ORTHO05D007508 4.8e-31 138.3 144 50.7
AagrBONN_evm.TU.Sc2ySwM_228.5128 Anthoceros agrestis HOM05D006092 ORTHO05D007508 1.8e-30 136.3 94 69.1
Pp3c9_15440 Physcomitrium patens HOM05D006092 ORTHO05D007508 3.1e-30 135.6 136 48.5
CBR_g28070 Chara braunii HOM05D006092 ORTHO05D007508 4.5e-29 131.7 108 59.3
Mapoly0038s0054 Marchantia polymorpha HOM05D006092 ORTHO05D007508 4.5e-29 131.7 109 59.6
Sp1g41280 Schrenkiella parvula HOM05D006092 ORTHO05D007508 2.9e-28 129.0 139 55.4
TAR627G0509 Trochodendron aralioides HOM05D006092 ORTHO05D007508 2.8e-23 112.5 72 75.0
EL10As5g23536 Beta vulgaris HOM05D006092 ORTHO05D007508 8.0e-18 94.4 55 80.0
PRCOL_00006984 Prasinoderma coloniale HOM05D006092 ORTHO05D007508 1.8e-17 93.2 90 51.1
EL10Ac3g06625 Beta vulgaris HOM05D006092 ORTHO05D007508 2.3e-17 92.8 53 81.1
EL10Ac5g10941 Beta vulgaris HOM05D006092 ORTHO05D007508 2.3e-17 92.8 53 81.1
MCO01G478 Micromonas commoda HOM05D006092 ORTHO05D007508 5.2e-17 91.7 99 50.5
Cre12.g560950 Chlamydomonas reinhardtii HOM05D006092 ORTHO05D007508 1.9e-11 73.2 98 38.8


User provided reference genes

Program Settings