Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g066030.4 Solanum lycopersicum HOM05D004535 ORTHO05D005341 0.0e+00 3572.3 1814 100.0
Sopen07g034220 Solanum pennellii HOM05D004535 ORTHO05D005341 0.0e+00 3555.8 1814 99.6
Nitab4.5_0001303g0050 Nicotiana tabacum HOM05D004535 ORTHO05D005341 0.0e+00 3219.9 1800 90.6
Peaxi162Scf00232g00530 Petunia axillaris HOM05D004535 ORTHO05D005341 0.0e+00 3085.0 1833 86.4
Nitab4.5_0000152g0130 Nicotiana tabacum HOM05D004535 ORTHO05D005341 0.0e+00 2947.1 1649 90.8
Dinv19653 Davidia involucrata HOM05D004535 ORTHO05D005341 0.0e+00 2818.1 1821 77.4
GSVIVG01014769001 Vitis vinifera HOM05D004535 ORTHO05D005341 0.0e+00 2768.4 1816 76.5
Hma1.2p1_0193F.1_g084240 Hydrangea macrophylla HOM05D004535 ORTHO05D005341 0.0e+00 2753.4 1817 75.9
Lj1C898T24 Lonicera japonica HOM05D004535 ORTHO05D005341 0.0e+00 2749.2 1835 75.7
Cc05_g15580 Coffea canephora HOM05D004535 ORTHO05D005341 0.0e+00 2747.2 1822 75.4
CSS0018371 Camellia sinensis var. sinensis HOM05D004535 ORTHO05D005341 0.0e+00 2746.5 1818 76.0
Atru.chr2.3782 Acer truncatum HOM05D004535 ORTHO05D005341 0.0e+00 2733.0 1817 75.2
Migut.M01591 Erythranthe guttata HOM05D004535 ORTHO05D005341 0.0e+00 2730.7 1816 75.2
Rhsim04G0008600 Rhododendron simsii HOM05D004535 ORTHO05D005341 0.0e+00 2723.7 1833 74.6
Prupe.6G032900 Prunus persica HOM05D004535 ORTHO05D005341 0.0e+00 2704.1 1819 74.3
MD11G1042000 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 2700.6 1819 74.9
MD03G1040600 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 2696.0 1819 74.5
Manes.01G005500 Manihot esculenta HOM05D004535 ORTHO05D005341 0.0e+00 2691.0 1817 74.2
Oeu013013.2 Olea europaea HOM05D004535 ORTHO05D005341 0.0e+00 2690.2 1892 72.9
MSTRG.15824 Avicennia marina HOM05D004535 ORTHO05D005341 0.0e+00 2686.8 1817 74.1
CiPaw.11G209600 Carya illinoinensis HOM05D004535 ORTHO05D005341 0.0e+00 2686.0 1819 73.8
CANSAT11G1644 Cannabis sativa HOM05D004535 ORTHO05D005341 0.0e+00 2685.2 1820 74.7
TAR627G0331 Trochodendron aralioides HOM05D004535 ORTHO05D005341 0.0e+00 2683.7 1816 73.7
vmacro09603 Vaccinium macrocarpon HOM05D004535 ORTHO05D005341 0.0e+00 2682.9 1926 71.1
Ciclev10007234m.g Citrus clementina HOM05D004535 ORTHO05D005341 0.0e+00 2679.8 1823 74.1
Potri.001G470600 Populus trichocarpa HOM05D004535 ORTHO05D005341 0.0e+00 2668.6 1818 73.5
SalBow8G3417 Salvia bowleyana HOM05D004535 ORTHO05D005341 0.0e+00 2663.6 1844 73.2
Gorai.009G454100 Gossypium raimondii HOM05D004535 ORTHO05D005341 0.0e+00 2655.6 1803 73.6
FAN11G1653 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2654.8 1819 73.2
Thecc.07G003100 Theobroma cacao HOM05D004535 ORTHO05D005341 0.0e+00 2652.9 1764 75.3
FAN16G2454 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2652.1 1819 73.1
TWI38G2299 Tripterygium wilfordii HOM05D004535 ORTHO05D005341 0.0e+00 2650.2 1819 73.5
RcHm_v2.0_Chr5g0075021 Rosa chinensis HOM05D004535 ORTHO05D005341 0.0e+00 2649.4 1819 72.7
FAN25G2892 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2647.1 1819 73.1
FAN21G2952 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2640.9 1819 73.0
HanXRQChr03g0079281 Helianthus annuus HOM05D004535 ORTHO05D005341 0.0e+00 2636.3 1820 72.5
ECA240G2049 Erigeron canadensis HOM05D004535 ORTHO05D005341 0.0e+00 2610.5 1818 72.1
Haze_09903 Corylus avellana HOM05D004535 ORTHO05D005341 0.0e+00 2600.9 1855 71.2
Gohir.D05G387450 Gossypium hirsutum HOM05D004535 ORTHO05D005341 0.0e+00 2598.5 1803 72.6
QL08p000781 Quercus lobata HOM05D004535 ORTHO05D005341 0.0e+00 2592.4 1777 73.2
Psat5g164120 Pisum sativum HOM05D004535 ORTHO05D005341 0.0e+00 2590.1 1820 71.3
PGR083G0052 Punica granatum HOM05D004535 ORTHO05D005341 0.0e+00 2589.7 1816 71.3
Glyma.08G336400 Glycine max HOM05D004535 ORTHO05D005341 0.0e+00 2587.4 1820 71.0
SalBow8G2487 Salvia bowleyana HOM05D004535 ORTHO05D005341 0.0e+00 2585.8 1825 72.0
Medtr3g461520 Medicago truncatula HOM05D004535 ORTHO05D005341 0.0e+00 2585.4 1819 71.1
Glyma.18G071500 Glycine max HOM05D004535 ORTHO05D005341 0.0e+00 2583.9 1819 70.8
Sabra11G0138700 Salix brachista HOM05D004535 ORTHO05D005341 0.0e+00 2580.4 1974 67.3
Lj6g0015552 Lotus japonicus HOM05D004535 ORTHO05D005341 0.0e+00 2577.0 1819 70.8
Duzib213G0320 Durio zibethinus HOM05D004535 ORTHO05D005341 0.0e+00 2573.5 1818 72.0
Eucgr.F02001 Eucalyptus grandis HOM05D004535 ORTHO05D005341 0.0e+00 2569.3 1817 71.0
Lalb_Chr20g0115261 Lupinus albus HOM05D004535 ORTHO05D005341 0.0e+00 2564.3 1819 71.0
Sed0018073 Sechium edule HOM05D004535 ORTHO05D005341 0.0e+00 2560.0 1819 71.0
Aqoxy4G02281 Aquilegia oxysepala HOM05D004535 ORTHO05D005341 0.0e+00 2558.1 1816 69.8
Lalb_Chr18g0050431 Lupinus albus HOM05D004535 ORTHO05D005341 0.0e+00 2556.6 1820 70.6
THA.LOC104822705 Tarenaya hassleriana HOM05D004535 ORTHO05D005341 0.0e+00 2553.9 1817 70.4
ClCG10G004180 Citrullus lanatus HOM05D004535 ORTHO05D005341 0.0e+00 2553.1 1829 70.6
FvH4_3g41830 Fragaria vesca HOM05D004535 ORTHO05D005341 0.0e+00 2551.9 1756 72.7
TPR.G14720 Trifolium pratense HOM05D004535 ORTHO05D005341 0.0e+00 2550.0 1818 70.2
Thhalv10019881m.g Eutrema salsugineum HOM05D004535 ORTHO05D005341 0.0e+00 2548.9 1817 70.6
Phvul.006G061700 Phaseolus vulgaris HOM05D004535 ORTHO05D005341 0.0e+00 2546.9 1820 70.2
BcaB04g18753 Brassica carinata HOM05D004535 ORTHO05D005341 0.0e+00 2543.8 1817 70.2
Sc20g0000040 Simmondsia chinensis HOM05D004535 ORTHO05D005341 0.0e+00 2543.1 1818 70.2
Carub.0003s1271 Capsella rubella HOM05D004535 ORTHO05D005341 0.0e+00 2541.1 1818 70.5
MELO3C014086.2 Cucumis melo HOM05D004535 ORTHO05D005341 0.0e+00 2537.3 1817 70.3
AL3G25150 Arabidopsis lyrata HOM05D004535 ORTHO05D005341 0.0e+00 2531.1 1820 70.0
Aa31LG8G550 Aethionema arabicum HOM05D004535 ORTHO05D005341 0.0e+00 2528.4 1818 69.7
Lsat_1_v5_gn_9_89621 Lactuca sativa HOM05D004535 ORTHO05D005341 0.0e+00 2527.7 1814 70.7
BcaC01g03999 Brassica carinata HOM05D004535 ORTHO05D005341 0.0e+00 2527.3 1817 69.9
AT3G13330 Arabidopsis thaliana HOM05D004535 ORTHO05D005341 0.0e+00 2524.6 1818 70.1
BolC3t16899H Brassica oleracea HOM05D004535 ORTHO05D005341 0.0e+00 2524.2 1818 69.7
BraA03t12967Z Brassica rapa HOM05D004535 ORTHO05D005341 0.0e+00 2522.3 1817 69.7
arahy.Tifrunner.gnm1.ann1.DDNH16 Arachis hypogaea HOM05D004535 ORTHO05D005341 0.0e+00 2521.5 1901 67.5
CsaV3_3G003990 Cucumis sativus L. HOM05D004535 ORTHO05D005341 0.0e+00 2520.3 1817 70.0
PSO210G5731 Papaver somniferum HOM05D004535 ORTHO05D005341 0.0e+00 2520.3 1816 69.2
C03p46300 Brassica napus HOM05D004535 ORTHO05D005341 0.0e+00 2520.0 1817 69.8
Sp3g11530 Schrenkiella parvula HOM05D004535 ORTHO05D005341 0.0e+00 2520.0 1816 69.4
A03p38140 Brassica napus HOM05D004535 ORTHO05D005341 0.0e+00 2518.8 1817 69.6
HanXRQChr13g0409231 Helianthus annuus HOM05D004535 ORTHO05D005341 0.0e+00 2517.7 1816 69.9
EL10Ac4g07499 Beta vulgaris HOM05D004535 ORTHO05D005341 0.0e+00 2504.2 1813 68.8
CARHR087940 Cardamine hirsuta HOM05D004535 ORTHO05D005341 0.0e+00 2497.6 1819 69.5
VMungo0540G2510 Vigna mungo HOM05D004535 ORTHO05D005341 0.0e+00 2497.2 1764 71.1
AUR62035634 Chenopodium quinoa HOM05D004535 ORTHO05D005341 0.0e+00 2481.8 1819 68.7
AUR62017172 Chenopodium quinoa HOM05D004535 ORTHO05D005341 0.0e+00 2471.8 1831 67.7
Gohir.A04G001901 Gossypium hirsutum HOM05D004535 ORTHO05D005341 0.0e+00 2468.3 1674 74.3
DCAR_013765 Daucus carota HOM05D004535 ORTHO05D005341 0.0e+00 2451.4 1815 68.5
MBI15_g37116_MAGBIO Magnolia biondii HOM05D004535 ORTHO05D005341 0.0e+00 2420.6 1790 68.3
Hund22978 Selenicereus undatus HOM05D004535 ORTHO05D005341 0.0e+00 2404.8 1816 67.8
QL08p000755 Quercus lobata HOM05D004535 ORTHO05D005341 0.0e+00 2374.4 1945 63.9
Medtr3g461500 Medicago truncatula HOM05D004535 ORTHO05D005341 0.0e+00 2371.7 1855 65.6
Ah.06g180940 Amaranthus hybridus HOM05D004535 ORTHO05D005341 0.0e+00 2350.1 1839 64.4
Nn1g08312 Nelumbo nucifera HOM05D004535 ORTHO05D005341 0.0e+00 2331.6 1625 72.2
Actinidia03667 Actinidia chinensis HOM05D004535 ORTHO05D005341 0.0e+00 2315.4 1564 75.1
Haze_09904 Corylus avellana HOM05D004535 ORTHO05D005341 0.0e+00 2282.7 1904 63.2
ATR0751G071 Amborella trichopoda HOM05D004535 ORTHO05D005341 0.0e+00 2281.5 1821 63.1
HPP92_018915 Vanilla planifolia HOM05D004535 ORTHO05D005341 0.0e+00 2280.0 1831 63.5
Cpa.g.sc12.80 Carica papaya HOM05D004535 ORTHO05D005341 0.0e+00 2147.1 1740 65.3
Ca_14867_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 0.0e+00 2115.1 1535 69.6
CiPaw.12G142100 Carya illinoinensis HOM05D004535 ORTHO05D005341 0.0e+00 2111.6 1682 64.9
Zm00001eb281130 Zea mays HOM05D004535 ORTHO05D005341 0.0e+00 2094.7 1822 59.0
arahy.Tifrunner.gnm1.ann1.HJC4WF Arachis hypogaea HOM05D004535 ORTHO05D005341 0.0e+00 2092.0 1442 71.6
PGSC0003DMG401022150 Solanum tuberosum HOM05D004535 ORTHO05D005341 0.0e+00 1850.5 944 97.7
unitig_699.g19598 Utricularia gibba HOM05D004535 ORTHO05D005341 0.0e+00 1785.8 1815 53.7
MD00G1206400 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 1780.4 1252 71.7
CDE05G3236 Ceratophyllum demersum HOM05D004535 ORTHO05D005341 0.0e+00 1744.6 1451 62.2
Potri.011G167700 Populus trichocarpa HOM05D004535 ORTHO05D005341 0.0e+00 1734.9 1146 74.3
CAN.G623.63 Capsicum annuum HOM05D004535 ORTHO05D005341 0.0e+00 1585.5 861 95.2
Mapoly0071s0029 Marchantia polymorpha HOM05D004535 ORTHO05D005341 0.0e+00 1396.3 1927 41.4
Pp3c20_11540 Physcomitrium patens HOM05D004535 ORTHO05D005341 0.0e+00 1387.1 1857 41.8
AagrBONN_evm.TU.Sc2ySwM_228.5886 Anthoceros agrestis HOM05D004535 ORTHO05D005341 0.0e+00 1378.2 1860 42.0
CAN.G623.64 Capsicum annuum HOM05D004535 ORTHO05D005341 0.0e+00 1345.9 945 76.6
Mapoly0069s0005 Marchantia polymorpha HOM05D004535 ORTHO05D005341 0.0e+00 1319.7 1875 39.8
Pp3c15_5520 Physcomitrium patens HOM05D004535 ORTHO05D005341 0.0e+00 1208.4 1829 39.3
SMO184G0002 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 0.0e+00 1178.3 1866 37.9
SMO340G0109 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 0.0e+00 1139.0 1840 37.1
Ca_14861_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 4.1e-297 1025.8 721 70.2
SMO239G0001 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 1.3e-295 1020.8 1842 35.2
CBR_g24134 Chara braunii HOM05D004535 ORTHO05D005341 4.5e-280 969.1 1974 33.8
COL.COLO4_07778 Corchorus olitorius HOM05D004535 ORTHO05D005341 1.2e-251 874.8 1169 45.6
Os06g0301300 Oryza sativa ssp. japonica HOM05D004535 ORTHO05D005341 8.6e-247 858.6 692 60.5
Potri.011G167650 Populus trichocarpa HOM05D004535 ORTHO05D005341 1.1e-188 665.6 505 67.1
Actinidia00829 Actinidia chinensis HOM05D004535 ORTHO05D005341 1.8e-175 621.7 619 58.5
SEGI_13123 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 2.6e-134 485.0 458 52.2
QL10p044954 Quercus lobata HOM05D004535 ORTHO05D005341 6.9e-127 460.3 635 44.7
MCO11G531 Micromonas commoda HOM05D004535 ORTHO05D005341 1.2e-118 433.0 1926 24.9
VMungo0540G1109 Vigna mungo HOM05D004535 ORTHO05D005341 3.2e-116 424.9 322 63.7
Ca_14860_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 1.6e-115 422.5 339 66.7
SEGI_38328 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 9.6e-113 413.3 468 48.9
Actinidia00827 Actinidia chinensis HOM05D004535 ORTHO05D005341 3.5e-107 394.8 301 67.1
MD00G1206600 Malus domestica HOM05D004535 ORTHO05D005341 5.1e-106 391.0 220 82.3
MD00G1206500 Malus domestica HOM05D004535 ORTHO05D005341 9.7e-97 360.1 252 75.8
VMungo1127G2045 Vigna mungo HOM05D004535 ORTHO05D005341 3.1e-95 355.1 269 65.4
PRCOL_00006556 Prasinoderma coloniale HOM05D004535 ORTHO05D005341 9.4e-84 317.0 1932 22.6
Actinidia03668 Actinidia chinensis HOM05D004535 ORTHO05D005341 2.0e-81 309.3 225 68.0
SEGI_32129 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 5.9e-78 297.7 359 51.8
Nn1g08306 Nelumbo nucifera HOM05D004535 ORTHO05D005341 2.1e-75 289.3 167 79.6
arahy.Tifrunner.gnm1.ann1.P6R29M Arachis hypogaea HOM05D004535 ORTHO05D005341 2.0e-70 272.7 345 46.4
PGSC0003DMG402022150 Solanum tuberosum HOM05D004535 ORTHO05D005341 3.3e-44 185.7 96 94.8
SEGI_15666 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 6.0e-38 164.9 138 63.0
Cpa.g.sc12.82 Carica papaya HOM05D004535 ORTHO05D005341 1.2e-33 150.6 114 71.1
Actinidia00828 Actinidia chinensis HOM05D004535 ORTHO05D005341 2.0e-33 149.8 210 46.7
Cre14.g628702 Chlamydomonas reinhardtii HOM05D004535 ORTHO05D005341 5.1e-29 135.2 646 24.1
arahy.Tifrunner.gnm1.ann1.A7P7U5 Arachis hypogaea HOM05D004535 ORTHO05D005341 2.2e-24 119.8 93 72.0
PSO541G1144 Papaver somniferum HOM05D004535 ORTHO05D005341 3.0e-21 109.4 74 64.9
Ca_31034_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 1.5e-20 107.1 75 70.7
Cfa027001 Carpinus fangiana HOM05D004535 ORTHO05D005341 4.3e-20 105.5 827 20.0
Psat5g106440 Pisum sativum HOM05D004535 ORTHO05D005341 4.7e-19 102.1 65 78.5
Lsat_1_v5_gn_0_5420 Lactuca sativa HOM05D004535 ORTHO05D005341 4.0e-18 99.0 73 65.8
arahy.Tifrunner.gnm1.ann1.6S2B7N Arachis hypogaea HOM05D012221 ORTHO05D005341 3.4e-17 95.9 116 51.7
VMungo1215G1327 Vigna mungo HOM05D004535 ORTHO05D005341 7.6e-17 94.7 67 74.6
arahy.Tifrunner.gnm1.ann1.QBA8JR Arachis hypogaea HOM05D004535 ORTHO05D005341 1.7e-16 93.6 163 38.7
arahy.Tifrunner.gnm1.ann1.EHT35G Arachis hypogaea HOM05D004535 ORTHO05D005341 1.2e-14 87.4 89 57.3
VMungo0110G0001 Vigna mungo HOM05D004535 ORTHO05D005341 5.6e-12 78.6 63 57.1
SEGI_18126 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 1.4e-10 73.9 73 42.5
Psat4g112520 Pisum sativum HOM05D004535 ORTHO05D005341 2.4e-10 73.2 45 71.1
arahy.Tifrunner.gnm1.ann1.HQ6FCP Arachis hypogaea HOM05D004535 ORTHO05D005341 5.8e-09 68.6 169 34.3
CSS0045016 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 3.8e-08 65.9 72 48.6


User provided reference genes

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