Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g065940.1 Solanum lycopersicum HOM05D007771 ORTHO05D009850 2.9e-34 147.9 71 100.0
Sopen07g034140 Solanum pennellii HOM05D007771 ORTHO05D009850 2.5e-33 144.8 71 98.6
PGSC0003DMG400022153 Solanum tuberosum HOM05D007771 ORTHO05D009850 9.8e-30 132.9 71 90.1
Eucgr.F03660 Eucalyptus grandis HOM05D007771 ORTHO05D009850 5.8e-14 80.5 61 63.9
arahy.Tifrunner.gnm1.ann1.YJMT2M Arachis hypogaea HOM05D007771 ORTHO05D009850 9.9e-14 79.7 61 59.0
Gohir.D05G386700 Gossypium hirsutum HOM05D007771 ORTHO05D009850 1.3e-13 79.3 61 67.2
CAN.G623.52 Capsicum annuum HOM05D007771 ORTHO05D009850 2.2e-13 78.6 67 61.2
arahy.Tifrunner.gnm1.ann1.0J0D7Z Arachis hypogaea HOM05D007771 ORTHO05D009850 2.9e-13 78.2 61 60.7
arahy.Tifrunner.gnm1.ann1.29L1CF Arachis hypogaea HOM05D007771 ORTHO05D009850 2.9e-13 78.2 61 60.7
QL08p001590 Quercus lobata HOM05D007771 ORTHO05D009850 2.9e-13 78.2 68 60.3
Cfa016941 Carpinus fangiana HOM05D007771 ORTHO05D009850 3.7e-13 77.8 62 66.1
Gohir.A04G003000 Gossypium hirsutum HOM05D007771 ORTHO05D009850 1.1e-12 76.3 59 67.8
Gorai.009G453400 Gossypium raimondii HOM05D007771 ORTHO05D009850 1.1e-12 76.3 59 67.8
Potri.001G469401 Populus trichocarpa HOM05D007771 ORTHO05D009850 1.1e-12 76.3 67 59.7
MD03G1039700 Malus domestica HOM05D007771 ORTHO05D009850 1.9e-12 75.5 61 57.4
MD11G1040400 Malus domestica HOM05D007771 ORTHO05D009850 1.9e-12 75.5 70 58.6
Ciclev10010110m.g Citrus clementina HOM05D007771 ORTHO05D009850 5.4e-12 73.9 61 55.7
Cc05_g15490 Coffea canephora HOM05D007771 ORTHO05D009850 5.4e-12 73.9 61 57.4
Thecc.07G005300 Theobroma cacao HOM05D007771 ORTHO05D009850 7.1e-12 73.6 61 62.3
Phvul.008G282400 Phaseolus vulgaris HOM05D007771 ORTHO05D009850 9.2e-12 73.2 61 57.4
Glyma.02G303200 Glycine max HOM05D007771 ORTHO05D009850 2.1e-11 72.0 61 54.1
Manes.02G224000 Manihot esculenta HOM05D007771 ORTHO05D009850 2.7e-11 71.6 58 62.1
Potri.005G061200 Populus trichocarpa HOM05D007771 ORTHO05D009850 3.5e-11 71.2 61 47.5
Atru.chr2.3846 Acer truncatum HOM05D007771 ORTHO05D009850 4.6e-11 70.9 68 57.4
BcaC01g01562 Brassica carinata HOM05D007771 ORTHO05D009850 6.0e-11 70.5 63 58.7
A08p00340 Brassica napus HOM05D007771 ORTHO05D009850 6.0e-11 70.5 63 58.7
C03p93160 Brassica napus HOM05D007771 ORTHO05D009850 6.0e-11 70.5 63 58.7
BolC3t21615H Brassica oleracea HOM05D007771 ORTHO05D009850 6.0e-11 70.5 63 58.7
CiPaw.11G208800 Carya illinoinensis HOM05D007771 ORTHO05D009850 6.0e-11 70.5 61 59.0
TWI39G0067 Tripterygium wilfordii HOM05D007771 ORTHO05D009850 6.0e-11 70.5 61 59.0
BcaB04g16929 Brassica carinata HOM05D007771 ORTHO05D009850 7.8e-11 70.1 63 58.7
BraA08t32092Z Brassica rapa HOM05D007771 ORTHO05D009850 7.8e-11 70.1 63 58.7
COL.COLO4_07761 Corchorus olitorius HOM05D007771 ORTHO05D009850 7.8e-11 70.1 58 56.9
Medtr5g096780 Medicago truncatula HOM05D007771 ORTHO05D009850 1.0e-10 69.7 61 55.7
LjContig00081g0001678 Lotus japonicus HOM05D007771 ORTHO05D009850 1.3e-10 69.3 61 55.7
Potri.011G166250 Populus trichocarpa HOM05D007771 ORTHO05D009850 1.3e-10 69.3 71 53.5
MBI15_g00878_MAGBIO Magnolia biondii HOM05D007771 ORTHO05D009850 1.7e-10 68.9 62 53.2
Manes.05G206300 Manihot esculenta HOM05D007771 ORTHO05D009850 1.7e-10 68.9 69 55.1
Medtr5g096760 Medicago truncatula HOM05D007771 ORTHO05D009850 1.7e-10 68.9 61 54.1
Lalb_Chr17g0349031 Lupinus albus HOM05D007771 ORTHO05D009850 2.3e-10 68.6 61 54.1
RcHm_v2.0_Chr5g0075191 Rosa chinensis HOM05D007771 ORTHO05D009850 2.3e-10 68.6 61 57.4
Potri.007G107500 Populus trichocarpa HOM05D007771 ORTHO05D009850 3.0e-10 68.2 69 50.7
TPR.G1243 Trifolium pratense HOM05D007771 ORTHO05D009850 3.9e-10 67.8 61 52.5
Glyma.14G010700 Glycine max HOM05D007771 ORTHO05D009850 5.1e-10 67.4 61 50.8
TAR627G1191 Trochodendron aralioides HOM05D007771 ORTHO05D009850 5.1e-10 67.4 61 59.0
BraA05t22434Z Brassica rapa HOM05D007771 ORTHO05D009850 1.1e-09 66.2 62 54.8
Duzib268G1197 Durio zibethinus HOM05D007771 ORTHO05D009850 1.1e-09 66.2 61 55.7
MELO3C014083.2 Cucumis melo HOM05D007771 ORTHO05D009850 1.5e-09 65.9 61 54.1
A03p38110 Brassica napus HOM05D004608 ORTHO05D006533 3.3e-09 64.7 62 51.6
Carub.0003s1266 Capsella rubella HOM05D007771 ORTHO05D009850 3.3e-09 64.7 63 52.4
PGR083G2136 Punica granatum HOM05D007771 ORTHO05D009850 4.3e-09 64.3 62 58.1
BolC3t16896H Brassica oleracea HOM05D007771 ORTHO05D009850 5.6e-09 63.9 62 50.0
Sed0026400 Sechium edule HOM05D007771 ORTHO05D009850 7.3e-09 63.5 61 49.2
BcaB06g25475 Brassica carinata HOM05D007771 ORTHO05D009850 9.5e-09 63.2 62 51.6
AT3G13275 Arabidopsis thaliana HOM05D007771 ORTHO05D009850 1.6e-08 62.4 61 50.8
BraA03t12964Z Brassica rapa HOM05D004608 ORTHO05D006533 2.1e-08 62.0 60 51.7
BcaC05g29197 Brassica carinata HOM05D007771 ORTHO05D009850 2.8e-08 61.6 63 54.0
C03p46260 Brassica napus HOM05D007771 ORTHO05D009850 2.8e-08 61.6 62 48.4
C05p54690 Brassica napus HOM05D007771 ORTHO05D009850 2.8e-08 61.6 63 54.0
BolC5t34139H Brassica oleracea HOM05D007771 ORTHO05D009850 2.8e-08 61.6 63 54.0
CARHR045420 Cardamine hirsuta HOM05D007771 ORTHO05D009850 2.8e-08 61.6 61 50.8
Thhalv10022324m.g Eutrema salsugineum HOM05D007771 ORTHO05D009850 2.8e-08 61.6 61 50.8
AL3G25100 Arabidopsis lyrata HOM05D007771 ORTHO05D009850 3.6e-08 61.2 61 49.2
A05p36330 Brassica napus HOM05D007771 ORTHO05D009850 4.7e-08 60.8 40 65.0
Sp3g11480 Schrenkiella parvula HOM05D007771 ORTHO05D009850 4.7e-08 60.8 40 65.0
PGSC0003DMG400014434 Solanum tuberosum HOM05D007771 ORTHO05D009850 4.7e-08 60.8 58 50.0
EL10Ac4g07508 Beta vulgaris HOM05D007771 ORTHO05D009850 6.2e-08 60.5 36 69.4
ClCG10G004130 Citrullus lanatus HOM05D007771 ORTHO05D009850 8.1e-08 60.1 61 50.8
AL1G63820 Arabidopsis lyrata HOM05D007771 ORTHO05D009850 1.1e-07 59.7 61 50.8
Nn1g08434 Nelumbo nucifera HOM05D007771 ORTHO05D009850 1.1e-07 59.7 78 48.7
CANSAT11G2411 Cannabis sativa HOM05D007771 ORTHO05D009850 1.4e-07 59.3 61 49.2
BolC1t05126H Brassica oleracea HOM05D007771 ORTHO05D009850 1.8e-07 58.9 62 51.6
CARHR087900 Cardamine hirsuta HOM05D007771 ORTHO05D009850 3.1e-07 58.2 40 65.0
Migut.H01728 Erythranthe guttata HOM05D007771 ORTHO05D009850 3.1e-07 58.2 61 47.5
A01p40280 Brassica napus HOM05D004608 ORTHO05D006533 4.0e-07 57.8 68 44.1
BraA01t04064Z Brassica rapa HOM05D004608 ORTHO05D006533 4.0e-07 57.8 68 44.1
FAN11G2649 Fragaria x ananassa HOM05D007771 ORTHO05D009850 6.8e-07 57.0 34 70.6
C01p51800 Brassica napus HOM05D004608 ORTHO05D006533 8.9e-07 56.6 40 62.5
EL10Ac4g09984 Beta vulgaris HOM05D007771 ORTHO05D009850 7.6e-06 53.5 30 80.0


User provided reference genes

Program Settings