Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g065760.3 Solanum lycopersicum HOM05D007278 ORTHO05D009280 3.0e-277 958.0 513 100.0
Sopen07g033970 Solanum pennellii HOM05D007278 ORTHO05D009280 2.5e-268 928.3 512 97.3
PGSC0003DMG400022161 Solanum tuberosum HOM05D007278 ORTHO05D009280 1.3e-248 862.8 512 91.0
Nitab4.5_0010643g0030 Nicotiana tabacum HOM05D007278 ORTHO05D009280 2.3e-197 692.6 512 75.4
Nitab4.5_0000152g0330 Nicotiana tabacum HOM05D007278 ORTHO05D009280 6.8e-197 691.0 512 75.6
Peaxi162Scf00139g00103 Petunia axillaris HOM05D007278 ORTHO05D009280 8.5e-192 674.1 509 74.3
CAN.G623.31 Capsicum annuum HOM05D007278 ORTHO05D009280 4.3e-167 592.0 425 79.3
Lj8A180T100 Lonicera japonica HOM05D007278 ORTHO05D009280 3.4e-116 422.9 537 49.2
GSVIVG01014732001 Vitis vinifera HOM05D007278 ORTHO05D009280 1.4e-114 417.5 539 49.2
Hma1.2p1_1094F.1_g256380 Hydrangea macrophylla HOM05D007278 ORTHO05D009280 6.3e-110 402.1 513 50.3
Rhsim04G0010900 Rhododendron simsii HOM05D007278 ORTHO05D009280 1.1e-109 401.4 540 46.7
vmacro09628 Vaccinium macrocarpon HOM05D007278 ORTHO05D009280 1.1e-109 401.4 530 48.9
Cfa016926 Carpinus fangiana HOM05D007278 ORTHO05D009280 2.4e-109 400.2 539 45.8
Haze_09857 Corylus avellana HOM05D007278 ORTHO05D009280 3.4e-108 396.4 543 46.4
TAR626G0410 Trochodendron aralioides HOM05D007278 ORTHO05D009280 3.2e-106 389.8 536 45.9
Actinidia03626 Actinidia chinensis HOM05D007278 ORTHO05D009280 2.7e-105 386.7 529 46.7
MD11G1036100 Malus domestica HOM05D007278 ORTHO05D009280 1.4e-104 384.4 522 47.5
Migut.M01628 Erythranthe guttata HOM05D007278 ORTHO05D009280 8.8e-104 381.7 517 46.6
CSS0042987 Camellia sinensis var. sinensis HOM05D007278 ORTHO05D009280 1.5e-103 380.9 530 44.3
HanXRQChr11g0334411 Helianthus annuus HOM05D007278 ORTHO05D009280 2.0e-103 380.6 522 45.0
Oeu005473.1 Olea europaea HOM05D007278 ORTHO05D009280 2.0e-103 380.6 503 47.1
SalBow8G0571 Salvia bowleyana HOM05D007278 ORTHO05D009280 1.7e-102 377.5 514 48.2
SalBow8G0318 Salvia bowleyana HOM05D007278 ORTHO05D009280 2.8e-102 376.7 514 48.1
FvH4_3g42411 Fragaria vesca HOM05D007278 ORTHO05D009280 3.4e-100 369.8 513 46.0
FAN11G3173 Fragaria x ananassa HOM05D007278 ORTHO05D009280 1.0e-99 368.2 513 45.4
Ciclev10010817m.g Citrus clementina HOM05D007278 ORTHO05D009280 1.7e-99 367.5 514 45.1
FAN28G1934 Fragaria x ananassa HOM05D007278 ORTHO05D009280 1.1e-98 364.8 513 45.0
FAN21G2048 Fragaria x ananassa HOM05D007278 ORTHO05D009280 2.5e-98 363.6 511 45.6
Atru.chr2.3762 Acer truncatum HOM05D007278 ORTHO05D009280 4.2e-98 362.8 535 44.5
Cc05_g15160 Coffea canephora HOM05D007278 ORTHO05D009280 6.1e-97 359.0 515 46.2
Atru.chr2.3748 Acer truncatum HOM05D007278 ORTHO05D009280 7.9e-97 358.6 523 44.9
Nn7g37466 Nelumbo nucifera HOM05D007278 ORTHO05D009280 2.0e-95 354.0 552 43.3
Duzib213G0397 Durio zibethinus HOM05D007278 ORTHO05D009280 4.4e-95 352.8 541 43.1
TWI38G0395 Tripterygium wilfordii HOM05D007278 ORTHO05D009280 2.8e-94 350.1 518 42.1
FAN16G1801 Fragaria x ananassa HOM05D007278 ORTHO05D009280 7.0e-93 345.5 500 44.2
ECA236G2022 Erigeron canadensis HOM05D007278 ORTHO05D009280 9.1e-93 345.1 523 44.7
Gohir.D13G134500 Gossypium hirsutum HOM05D007278 ORTHO05D009280 8.5e-91 338.6 532 41.5
Gorai.013G150800 Gossypium raimondii HOM05D007278 ORTHO05D009280 8.5e-91 338.6 532 41.4
ClCG10G004340 Citrullus lanatus HOM05D007278 ORTHO05D009280 1.1e-90 338.2 518 44.0
COL.COLO4_07734 Corchorus olitorius HOM05D007278 ORTHO05D009280 1.5e-90 337.8 523 44.0
Dinv10356 Davidia involucrata HOM05D007278 ORTHO05D009280 3.0e-88 330.1 469 47.3
PSO210G1309 Papaver somniferum HOM05D007278 ORTHO05D009280 4.0e-88 329.7 521 41.5
Sabra16G0243500 Salix brachista HOM05D007278 ORTHO05D009280 4.0e-88 329.7 520 41.7
Gohir.A13G131200 Gossypium hirsutum HOM05D007278 ORTHO05D009280 3.3e-87 326.6 532 40.0
PGR031G2600 Punica granatum HOM05D007278 ORTHO05D009280 3.3e-87 326.6 517 41.2
RcHm_v2.0_Chr5g0075911 Rosa chinensis HOM05D007278 ORTHO05D009280 1.7e-86 324.3 514 42.6
Lsat_1_v5_gn_7_114160 Lactuca sativa HOM05D007278 ORTHO05D009280 2.2e-86 323.9 509 42.6
Potri.001G370700 Populus trichocarpa HOM05D007278 ORTHO05D009280 2.8e-86 323.6 525 42.1
EL10Ac4g07533 Beta vulgaris HOM05D007278 ORTHO05D009280 3.7e-86 323.2 520 39.8
THA.LOC104822724 Tarenaya hassleriana HOM05D007278 ORTHO05D009280 1.4e-85 321.2 537 39.7
Thecc.07G008600 Theobroma cacao HOM05D007278 ORTHO05D009280 1.4e-85 321.2 507 42.2
MELO3C014108.2 Cucumis melo HOM05D007278 ORTHO05D009280 4.1e-85 319.7 527 41.9
QL08p003254 Quercus lobata HOM05D007278 ORTHO05D009280 1.6e-84 317.8 438 47.3
ATR0751G235 Amborella trichopoda HOM05D007278 ORTHO05D009280 6.5e-83 312.4 540 38.3
AT1G55830 Arabidopsis thaliana HOM05D007278 ORTHO05D009280 7.2e-82 308.9 518 40.5
AL1G63950 Arabidopsis lyrata HOM05D007278 ORTHO05D009280 8.0e-81 305.4 512 39.1
CANSAT11G0150 Cannabis sativa HOM05D007278 ORTHO05D009280 1.0e-80 305.1 510 40.0
Aa31LG10G360 Aethionema arabicum HOM05D007278 ORTHO05D009280 4.4e-79 299.7 516 37.4
Sed0005179 Sechium edule HOM05D007278 ORTHO05D009280 3.7e-78 296.6 550 38.5
Sp1g41410 Schrenkiella parvula HOM05D007278 ORTHO05D009280 4.8e-78 296.2 531 38.8
BcaB07g33186 Brassica carinata HOM05D007278 ORTHO05D009280 1.4e-77 294.7 516 39.1
CiPaw.11G206100 Carya illinoinensis HOM05D007278 ORTHO05D009280 1.2e-76 291.6 460 43.5
Prupe.6G026900 Prunus persica HOM05D007278 ORTHO05D009280 1.6e-73 281.2 430 44.2
BcaC08g43656 Brassica carinata HOM05D007278 ORTHO05D009280 1.7e-70 271.2 514 37.0
C06p10730 Brassica napus HOM05D007278 ORTHO05D009280 1.7e-70 271.2 514 37.0
Cpa.g.sc12.134 Carica papaya HOM05D007278 ORTHO05D009280 2.0e-68 264.2 522 35.8
BraSC56t46403Z Brassica rapa HOM05D007278 ORTHO05D009280 3.5e-68 263.5 514 36.8
BolC6t36159H Brassica oleracea HOM05D007278 ORTHO05D009280 4.5e-68 263.1 502 36.7
Manes.15G057600 Manihot esculenta HOM05D007278 ORTHO05D009280 4.5e-68 263.1 437 41.6
AUR62035670 Chenopodium quinoa HOM05D007278 ORTHO05D009280 2.1e-65 254.2 469 36.0
CDE10G0141 Ceratophyllum demersum HOM05D007278 ORTHO05D009280 1.8e-64 251.1 517 36.8
SEGI_11808 Sequoiadendron giganteum HOM05D007278 ORTHO05D009280 2.0e-63 247.7 599 31.6
MD03G1032400 Malus domestica HOM05D007278 ORTHO05D009280 7.5e-63 245.7 243 57.2
Eucgr.F03677 Eucalyptus grandis HOM05D007278 ORTHO05D009280 1.2e-60 238.4 277 48.7
Phvul.006G059206 Phaseolus vulgaris HOM05D007278 ORTHO05D009280 3.0e-59 233.8 260 50.8
Lj6g0007693 Lotus japonicus HOM05D007278 ORTHO05D009280 1.1e-58 231.9 310 46.1
CARHR045530 Cardamine hirsuta HOM05D007278 ORTHO05D009280 1.9e-58 231.1 427 38.2
Hund23054 Selenicereus undatus HOM05D007278 ORTHO05D000105 2.5e-58 230.7 358 41.3
Thhalv10011545m.g Eutrema salsugineum HOM05D007278 ORTHO05D009280 3.3e-58 230.3 423 38.1
Carub.0001s4440 Capsella rubella HOM05D007278 ORTHO05D009280 4.3e-58 229.9 427 37.5
VMungo0540G0529 Vigna mungo HOM05D007278 ORTHO05D009280 5.6e-58 229.6 260 50.4
CsaV3_3G004120 Cucumis sativus L. HOM05D007278 ORTHO05D009280 1.2e-57 228.4 271 49.1
AUR62017137 Chenopodium quinoa HOM05D007278 ORTHO05D009280 2.8e-57 227.3 469 33.9
Lalb_Chr20g0114071 Lupinus albus HOM05D007278 ORTHO05D009280 3.4e-55 220.3 275 46.5
Glyma.18G074900 Glycine max HOM05D007278 ORTHO05D009280 9.2e-53 212.2 247 49.0
TPR.G17958 Trifolium pratense HOM05D007278 ORTHO05D009280 9.2e-53 212.2 331 42.9
Ca_12446_v3 Cicer arietinum L. HOM05D007278 ORTHO05D009280 1.2e-52 211.8 336 42.6
Ca_14732_v3 Cicer arietinum L. HOM05D007278 ORTHO05D009280 3.9e-51 206.8 243 50.6
Aqoxy1G02222 Aquilegia oxysepala HOM05D007278 ORTHO05D009280 6.6e-51 206.1 324 40.7
HPP92_028502 Vanilla planifolia HOM05D007278 ORTHO05D009280 9.5e-50 202.2 439 33.5
MD03G1032000 Malus domestica HOM05D007278 ORTHO05D009280 8.3e-46 189.1 146 68.5
arahy.Tifrunner.gnm1.ann1.BC78PS Arachis hypogaea HOM05D007278 ORTHO05D009280 2.1e-41 174.5 283 38.9
Pp3c7_290 Physcomitrium patens HOM05D007278 ORTHO05D009280 3.6e-41 173.7 592 26.7
arahy.Tifrunner.gnm1.ann1.E9ZV4R Arachis hypogaea HOM05D007278 ORTHO05D009280 8.1e-41 172.6 283 38.5
AagrBONN_evm.TU.Sc2ySwM_344.4166 Anthoceros agrestis HOM05D007278 ORTHO05D009280 8.9e-40 169.1 611 27.2
Mapoly0076s0093 Marchantia polymorpha HOM05D007278 ORTHO05D009280 8.9e-32 142.5 242 35.5
Psat5g165280 Pisum sativum HOM05D007278 ORTHO05D009280 1.5e-31 141.7 195 45.6
Ah.09g234860 Amaranthus hybridus HOM05D007278 ORTHO05D009280 6.6e-27 126.3 372 30.4
HPP92_017877 Vanilla planifolia HOM05D007278 ORTHO05D009280 2.2e-22 111.3 115 52.2
QL08p003251 Quercus lobata HOM05D007278 ORTHO05D009280 1.8e-19 101.7 88 58.0
Hma1.2p1_0604F.1_g187790 Hydrangea macrophylla HOM05D007278 ORTHO05D009280 9.0e-16 89.4 80 55.0
SEGI_34890 Sequoiadendron giganteum HOM05D007278 ORTHO05D009280 2.9e-14 84.3 130 38.5
Hma1.2p1_0292F.1_g115510 Hydrangea macrophylla HOM05D007278 ORTHO05D009280 1.2e-12 79.0 66 53.0
BraA06t23216Z Brassica rapa HOM05D007278 ORTHO05D009280 1.9e-10 71.6 165 36.4
HPP92_017878 Vanilla planifolia HOM05D007278 ORTHO05D009280 4.0e-08 63.9 55 54.5
Oeu039420.1 Olea europaea HOM05D003885 ORTHO05D004623 9.0e-08 62.8 71 47.9
Thecc.07G008800 Theobroma cacao HOM05D007278 ORTHO05D009280 8.4e-06 56.2 81 44.4


User provided reference genes

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