Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g065720.4 Solanum lycopersicum HOM05D005755 ORTHO05D007006 2.2e-79 298.9 152 100.0
Sopen07g033930 Solanum pennellii HOM05D005755 ORTHO05D007006 3.4e-56 221.9 113 99.1
PGSC0003DMG400022164 Solanum tuberosum HOM05D005755 ORTHO05D007006 1.4e-54 216.5 113 96.5
Solyc04g049970.4 Solanum lycopersicum HOM05D005755 ORTHO05D007006 2.6e-48 195.7 122 82.8
Nitab4.5_0001721g0080 Nicotiana tabacum HOM05D005755 ORTHO05D007006 1.0e-47 193.7 113 87.6
Sopen04g020610 Solanum pennellii HOM05D005755 ORTHO05D007006 2.9e-47 192.2 113 88.5
Nitab4.5_0000061g0170 Nicotiana tabacum HOM05D005755 ORTHO05D007006 1.2e-45 186.8 113 84.1
CAN.G79.77 Capsicum annuum HOM05D005755 ORTHO05D007006 4.7e-45 184.9 108 86.1
Peaxi162Scf00373g00210 Petunia axillaris HOM05D005755 ORTHO05D007006 1.4e-41 173.3 113 78.8
Peaxi162Scf00111g00718 Petunia axillaris HOM05D005755 ORTHO05D007006 3.8e-39 165.2 108 76.9
Cc00_g19060 Coffea canephora HOM05D005755 ORTHO05D007006 7.2e-38 161.0 113 70.8
Dinv04676 Davidia involucrata HOM05D005755 ORTHO05D007006 4.8e-34 148.3 113 69.0
Dinv11808 Davidia involucrata HOM05D005755 ORTHO05D007006 4.8e-34 148.3 113 69.0
vmacro04890 Vaccinium macrocarpon HOM05D005755 ORTHO05D007006 2.4e-33 146.0 114 66.7
Lsat_1_v5_gn_2_46180 Lactuca sativa HOM05D005755 ORTHO05D007006 3.1e-33 145.6 123 61.0
Manes.10G042600 Manihot esculenta HOM05D005755 ORTHO05D007006 5.3e-33 144.8 111 68.5
Gohir.A01G133200 Gossypium hirsutum HOM05D005755 ORTHO05D007006 2.7e-32 142.5 113 65.5
Nn5g30302 Nelumbo nucifera HOM05D005755 ORTHO05D007006 2.7e-32 142.5 101 70.3
Hma1.2p1_0157F.1_g068960 Hydrangea macrophylla HOM05D005755 ORTHO05D007006 3.5e-32 142.1 113 66.4
Sp6g14210 Schrenkiella parvula HOM05D005755 ORTHO05D007006 3.5e-32 142.1 101 70.3
Gorai.002G143500 Gossypium raimondii HOM05D005755 ORTHO05D007006 4.5e-32 141.7 113 65.5
Atru.chr12.636 Acer truncatum HOM05D005755 ORTHO05D007006 5.9e-32 141.4 110 64.5
Oeu057236.1 Olea europaea HOM05D005755 ORTHO05D007006 5.9e-32 141.4 115 66.1
Thecc.10G068000 Theobroma cacao HOM05D005755 ORTHO05D007006 7.7e-32 141.0 111 63.1
Aa31LG7G12880 Aethionema arabicum HOM05D005755 ORTHO05D007006 1.0e-31 140.6 105 68.6
CARHR264900 Cardamine hirsuta HOM05D005755 ORTHO05D007006 1.0e-31 140.6 100 70.0
PGR142G0594 Punica granatum HOM05D005755 ORTHO05D007006 1.3e-31 140.2 113 63.7
Sc05g0001890 Simmondsia chinensis HOM05D005755 ORTHO05D007006 1.3e-31 140.2 103 68.0
SGA_v2.0_scaffold122G33246 Striga asiatica HOM05D005940 ORTHO05D007027 1.3e-31 140.2 116 63.8
ECA238G0308 Erigeron canadensis HOM05D005755 ORTHO05D007006 1.7e-31 139.8 113 66.4
Medtr6g068850 Medicago truncatula HOM05D005755 ORTHO05D007006 1.7e-31 139.8 104 66.3
Oeu017232.1 Olea europaea HOM05D005755 ORTHO05D007006 1.7e-31 139.8 115 64.3
BcaC03g14561 Brassica carinata HOM05D005755 ORTHO05D007006 2.2e-31 139.4 113 65.5
C02p20090 Brassica napus HOM05D005755 ORTHO05D007006 2.2e-31 139.4 113 65.5
DCAR_015273 Daucus carota HOM05D005755 ORTHO05D007006 2.2e-31 139.4 113 64.6
THA.LOC104799357 Tarenaya hassleriana HOM05D005755 ORTHO05D007006 2.2e-31 139.4 101 66.3
BolC2t08139H Brassica oleracea HOM05D005755 ORTHO05D007006 2.9e-31 139.0 113 64.6
Thhalv10015092m.g Eutrema salsugineum HOM05D005755 ORTHO05D007006 2.9e-31 139.0 101 70.3
Eucgr.G02800 Eucalyptus grandis HOM05D005755 ORTHO05D007006 3.8e-31 138.7 101 70.3
AT5G51960 Arabidopsis thaliana HOM05D005755 ORTHO05D007006 5.0e-31 138.3 101 70.3
Cpa.g.sc53.20 Carica papaya HOM05D005755 ORTHO05D007006 1.1e-30 137.1 100 69.0
Ciclev10033129m.g Citrus clementina HOM05D005755 ORTHO05D007006 1.9e-30 136.3 101 67.3
TPR.G12499 Trifolium pratense HOM05D005755 ORTHO05D007006 1.9e-30 136.3 104 65.4
BraA02t06267Z Brassica rapa HOM05D005755 ORTHO05D007006 2.5e-30 136.0 101 69.3
Ca_19066_v3 Cicer arietinum L. HOM05D005755 ORTHO05D007006 2.5e-30 136.0 104 65.4
FAN10G3796 Fragaria x ananassa HOM05D005755 ORTHO05D007006 2.5e-30 136.0 100 70.0
BcaB08g35550 Brassica carinata HOM05D005755 ORTHO05D007006 3.2e-30 135.6 101 70.3
CSS0044562 Camellia sinensis var. sinensis HOM05D005755 ORTHO05D007006 3.2e-30 135.6 113 64.6
Duzib106G1131 Durio zibethinus HOM05D005755 ORTHO05D007006 3.2e-30 135.6 113 61.9
Duzib114G0063 Durio zibethinus HOM05D005755 ORTHO05D007006 3.2e-30 135.6 113 61.1
Glyma.05G164400 Glycine max HOM05D005755 ORTHO05D007006 3.2e-30 135.6 104 66.3
MD07G1179300 Malus domestica HOM05D005755 ORTHO05D007006 3.2e-30 135.6 101 68.3
Hund18453 Selenicereus undatus HOM05D005755 ORTHO05D007006 3.2e-30 135.6 101 67.3
TWI15G0398 Tripterygium wilfordii HOM05D005755 ORTHO05D007006 3.2e-30 135.6 102 67.6
MSTRG.8164 Avicennia marina HOM05D005755 ORTHO05D007006 4.2e-30 135.2 116 62.1
FvH4_7g20160 Fragaria vesca HOM05D005755 ORTHO05D007006 4.2e-30 135.2 100 70.0
Rhsim09G0154200 Rhododendron simsii HOM05D001639 ORTHO05D004140 4.2e-30 135.2 141 55.3
AL8G26290 Arabidopsis lyrata HOM05D005755 ORTHO05D007006 5.5e-30 134.8 101 69.3
Prupe.2G218600 Prunus persica HOM05D005755 ORTHO05D007006 5.5e-30 134.8 101 67.3
GSVIVG01016339001 Vitis vinifera HOM05D005755 ORTHO05D007006 5.5e-30 134.8 110 64.5
AL8G32330 Arabidopsis lyrata HOM05D005755 ORTHO05D007006 7.2e-30 134.4 101 69.3
Glyma.08G121800 Glycine max HOM05D005755 ORTHO05D007006 7.2e-30 134.4 104 66.3
MD01G1131200 Malus domestica HOM05D005755 ORTHO05D007006 7.2e-30 134.4 101 67.3
AUR62004768 Chenopodium quinoa HOM05D005755 ORTHO05D007006 9.4e-30 134.0 110 63.6
TAR381G1573 Trochodendron aralioides HOM05D005755 ORTHO05D007006 9.4e-30 134.0 101 65.3
AUR62037483 Chenopodium quinoa HOM05D005755 ORTHO05D007006 1.2e-29 133.7 101 66.3
EL10Ac7g17935 Beta vulgaris HOM05D005755 ORTHO05D007006 1.6e-29 133.3 110 61.8
A10p09750 Brassica napus HOM05D005755 ORTHO05D007006 1.6e-29 133.3 101 67.3
FAN06G3582 Fragaria x ananassa HOM05D005755 ORTHO05D007006 1.6e-29 133.3 100 68.0
HPP92_016041 Vanilla planifolia HOM05D005755 ORTHO05D007006 1.6e-29 133.3 111 64.0
Carub.0008s1205 Capsella rubella HOM05D005755 ORTHO05D007006 2.1e-29 132.9 101 66.3
Actinidia38859 Actinidia chinensis HOM05D005755 ORTHO05D007006 2.7e-29 132.5 100 65.0
EL10Ac3g06003 Beta vulgaris HOM05D005755 ORTHO05D007006 2.7e-29 132.5 114 61.4
FAN01G0677 Fragaria x ananassa HOM05D005755 ORTHO05D007006 2.7e-29 132.5 100 69.0
BraA10t43055Z Brassica rapa HOM05D005755 ORTHO05D007006 3.6e-29 132.1 113 63.7
EL10Ac6g13227 Beta vulgaris HOM05D005755 ORTHO05D007006 6.1e-29 131.3 101 64.4
CANSAT11G0923 Cannabis sativa HOM05D005755 ORTHO05D007006 6.1e-29 131.3 101 66.3
Lj4g0006534 Lotus japonicus HOM05D005755 ORTHO05D007006 6.1e-29 131.3 113 61.9
RcHm_v2.0_Chr1g0364121 Rosa chinensis HOM05D005755 ORTHO05D007006 6.1e-29 131.3 101 67.3
EL10Ac7g15953 Beta vulgaris HOM05D005755 ORTHO05D007006 8.0e-29 131.0 101 64.4
BcaC04g20616 Brassica carinata HOM05D005755 ORTHO05D007006 8.0e-29 131.0 101 66.3
C09p41470 Brassica napus HOM05D005755 ORTHO05D007006 8.0e-29 131.0 101 66.3
BolC9t57024H Brassica oleracea HOM05D005755 ORTHO05D007006 8.0e-29 131.0 101 66.3
PSO675G6920 Papaver somniferum HOM05D005755 ORTHO05D007006 8.0e-29 131.0 104 64.4
Psat1g119080 Pisum sativum HOM05D005755 ORTHO05D007006 8.0e-29 131.0 104 63.5
QL08p056843 Quercus lobata HOM05D005755 ORTHO05D007006 8.0e-29 131.0 113 63.7
Ah.04g160050 Amaranthus hybridus HOM05D005755 ORTHO05D007006 1.0e-28 130.6 100 65.0
Gohir.D01G118000 Gossypium hirsutum HOM05D005755 ORTHO05D007006 1.0e-28 130.6 131 56.5
Phvul.002G244400 Phaseolus vulgaris HOM05D005755 ORTHO05D007006 1.0e-28 130.6 104 62.5
FAN03G2322 Fragaria x ananassa HOM05D005755 ORTHO05D007006 1.4e-28 130.2 104 66.3
SalBow1G5334 Salvia bowleyana HOM05D005755 ORTHO05D007006 1.8e-28 129.8 105 63.8
SalBow1G7067 Salvia bowleyana HOM05D005755 ORTHO05D007006 1.8e-28 129.8 105 63.8
SalBow3G2244 Salvia bowleyana HOM05D005755 ORTHO05D007006 1.8e-28 129.8 105 63.8
SalBow3G3619 Salvia bowleyana HOM05D005755 ORTHO05D007006 1.8e-28 129.8 105 63.8
TWI38G1562 Tripterygium wilfordii HOM05D005755 ORTHO05D007006 1.8e-28 129.8 102 62.7
BcaB05g23952 Brassica carinata HOM05D005755 ORTHO05D007006 2.3e-28 129.4 115 60.0
Aqoxy3G01116 Aquilegia oxysepala HOM05D005755 ORTHO05D007006 3.0e-28 129.0 101 64.4
CiPaw.15G145100 Carya illinoinensis HOM05D005755 ORTHO05D007006 3.0e-28 129.0 101 66.3
Migut.F01798 Erythranthe guttata HOM05D005755 ORTHO05D007006 4.0e-28 128.6 100 66.0
EL10Ac5g11654 Beta vulgaris HOM05D005755 ORTHO05D007006 5.2e-28 128.3 98 66.3
CsaV3_3G030820 Cucumis sativus L. HOM05D005755 ORTHO05D007006 5.2e-28 128.3 101 68.3
Potri.008G044200 Populus trichocarpa HOM05D005755 ORTHO05D007006 5.2e-28 128.3 101 62.4
CDE10G1261 Ceratophyllum demersum HOM05D005755 ORTHO05D007006 1.5e-27 126.7 104 59.6
Lalb_Chr07g0186081 Lupinus albus HOM05D005755 ORTHO05D007006 1.5e-27 126.7 106 62.3
Cfa019629 Carpinus fangiana HOM05D005755 ORTHO05D007006 2.0e-27 126.3 111 60.4
VMungo0251G2378 Vigna mungo HOM05D001210 ORTHO05D001036 3.4e-27 125.6 112 58.9
Sabra08G0030600 Salix brachista HOM05D005755 ORTHO05D007006 5.7e-27 124.8 101 62.4
Sed0018161 Sechium edule HOM05D005755 ORTHO05D007006 5.7e-27 124.8 101 61.4
arahy.Tifrunner.gnm1.ann1.FL0JYU Arachis hypogaea HOM05D005755 ORTHO05D007006 2.2e-26 122.9 106 60.4
arahy.Tifrunner.gnm1.ann1.QA5RE0 Arachis hypogaea HOM05D005755 ORTHO05D007006 2.2e-26 122.9 106 60.4
ATR1096G048 Amborella trichopoda HOM05D005755 ORTHO05D007006 2.8e-26 122.5 103 60.2
SEGI_41538 Sequoiadendron giganteum HOM05D005755 ORTHO05D007006 3.7e-26 122.1 103 58.3
Potri.010G217300 Populus trichocarpa HOM05D005755 ORTHO05D007006 1.1e-25 120.6 101 58.4
SGA_v2.0_scaffold71G24037 Striga asiatica HOM05D005755 ORTHO05D007006 1.1e-25 120.6 116 56.0
MBI19_g25006_MAGBIO Magnolia biondii HOM05D005755 ORTHO05D007006 1.4e-25 120.2 101 61.4
Os11g0133900 Oryza sativa ssp. japonica HOM05D005755 ORTHO05D007006 1.0e-23 114.0 101 58.4
Zm00001eb163500 Zea mays HOM05D005755 ORTHO05D007006 2.5e-22 109.4 105 55.2
Zm00001eb235420 Zea mays HOM05D005755 ORTHO05D007006 5.5e-22 108.2 105 55.2
unitig_8.g3685 Utricularia gibba HOM05D005755 ORTHO05D007006 1.6e-21 106.7 102 56.9
Os12g0131266 Oryza sativa ssp. japonica HOM05D005755 ORTHO05D007006 3.1e-17 92.4 85 56.5
Glyma.19G087500 Glycine max HOM05D005755 ORTHO05D007006 5.4e-17 91.7 72 63.9
AagrBONN_evm.TU.Sc2ySwM_362.2659 Anthoceros agrestis HOM05D005755 ORTHO05D007006 2.7e-16 89.4 98 46.9
TPR.G31353 Trifolium pratense HOM05D005755 ORTHO05D007006 4.5e-16 88.6 61 65.6
SMO207G0003 Selaginella moellendorffii HOM05D005755 ORTHO05D007006 1.0e-15 87.4 114 43.0
Pp3c3_10790 Physcomitrium patens HOM05D005755 ORTHO05D007006 1.5e-14 83.6 101 45.5
HanXRQChr14g0436521 Helianthus annuus HOM05D005755 ORTHO05D007006 7.3e-14 81.3 78 51.3
Lj3g0006677 Lotus japonicus HOM05D005755 ORTHO05D007006 9.5e-14 80.9 118 42.4
Oeu057237.1 Olea europaea HOM05D005755 ORTHO05D007006 9.5e-14 80.9 82 54.9
Mapoly0006s0175 Marchantia polymorpha HOM05D005755 ORTHO05D007006 1.2e-13 80.5 101 41.6
A02p12030 Brassica napus HOM05D005755 ORTHO05D007006 3.6e-13 79.0 81 53.1
AL792U10010 Arabidopsis lyrata HOM05D005755 ORTHO05D007006 6.1e-13 78.2 66 62.1
Lj3g0023846 Lotus japonicus HOM05D005755 ORTHO05D007006 1.3e-10 70.5 68 55.9
Haze_18895 Corylus avellana HOM05D005755 ORTHO05D007006 3.7e-10 68.9 89 47.2
SEGI_15077 Sequoiadendron giganteum HOM05D002017 ORTHO05D007006 1.6e-08 63.5 85 44.7
Prupe.2G218400 Prunus persica HOM05D005755 ORTHO05D007006 3.5e-08 62.4 102 41.2
CBR_g23899 Chara braunii HOM05D005755 ORTHO05D007006 9.5e-06 54.3 106 34.0


User provided reference genes

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