Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g065600.3 Solanum lycopersicum HOM05D004836 ORTHO05D005150 0.0e+00 3491.4 1859 100.0
Sopen07g033810 Solanum pennellii HOM05D004836 ORTHO05D005150 0.0e+00 3406.3 1859 97.9
CAN.G623.12 Capsicum annuum HOM05D004836 ORTHO05D005150 0.0e+00 2658.6 1931 77.4
Nitab4.5_0007415g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 0.0e+00 2277.3 1957 67.8
Nitab4.5_0002736g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 0.0e+00 2266.9 1957 67.9
Peaxi162Scf00139g01321 Petunia axillaris HOM05D004836 ORTHO05D005150 0.0e+00 1587.0 2020 52.2
PGSC0003DMG400022276 Solanum tuberosum HOM05D004836 ORTHO05D005150 0.0e+00 1552.0 944 91.3
Dinv10337 Davidia involucrata HOM05D004836 ORTHO05D005150 1.7e-168 598.6 1927 33.0
Oeu014362.2 Olea europaea HOM05D004836 ORTHO05D005150 3.3e-161 574.3 1967 31.9
Oeu046935.1 Olea europaea HOM05D004836 ORTHO05D005150 8.8e-138 496.5 1904 31.2
Dinv40862 Davidia involucrata HOM05D004836 ORTHO05D005150 2.0e-137 495.4 1933 30.2
Cc05_g14960 Coffea canephora HOM05D004836 ORTHO05D005150 4.5e-134 484.2 1924 31.1
CSS0029600 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 1.8e-122 445.7 1901 29.7
Actinidia37154 Actinidia chinensis HOM05D004836 ORTHO05D005150 4.1e-119 434.5 1959 30.8
Rhsim06G0230000 Rhododendron simsii HOM05D004836 ORTHO05D005150 7.0e-119 433.7 2041 29.3
Actinidia05002 Actinidia chinensis HOM05D004836 ORTHO05D005150 5.0e-117 427.6 2068 28.7
GSVIVG01014692001 Vitis vinifera HOM05D004836 ORTHO05D005150 1.5e-116 426.0 2032 29.1
Migut.M01650 Erythranthe guttata HOM05D004836 ORTHO05D005150 3.7e-112 411.4 843 41.0
SGA_v2.0_scaffold171G38861 Striga asiatica HOM05D004836 ORTHO05D005150 3.7e-112 411.4 1958 29.3
TAR626G1210 Trochodendron aralioides HOM05D004836 ORTHO05D005150 1.7e-104 386.0 2010 28.4
SGA_v2.0_scaffold168G38564 Striga asiatica HOM05D004836 ORTHO05D005150 4.3e-100 371.3 1935 28.1
TAR624G0729 Trochodendron aralioides HOM05D004836 ORTHO05D005150 3.5e-94 351.7 1993 27.4
CiPaw.11G204300 Carya illinoinensis HOM05D004836 ORTHO05D005150 7.8e-94 350.5 1984 28.4
Haze_09829 Corylus avellana HOM05D004836 ORTHO05D005150 2.2e-88 332.4 1992 27.2
Thecc.07G013200 Theobroma cacao HOM05D004836 ORTHO05D005150 6.0e-86 324.3 1980 29.6
QL08p004015 Quercus lobata HOM05D004836 ORTHO05D005150 6.9e-82 310.8 2013 28.1
Duzib213G0869 Durio zibethinus HOM05D004836 ORTHO05D005150 2.0e-81 309.3 2035 27.9
FAN10G2990 Fragaria x ananassa HOM05D004836 ORTHO05D005150 3.7e-75 288.5 665 39.7
Atru.chr2.3693 Acer truncatum HOM05D004836 ORTHO05D005150 1.4e-74 286.6 693 36.9
Gohir.D01G061900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 2.0e-73 282.7 2008 26.7
Gorai.002G100500 Gossypium raimondii HOM05D004836 ORTHO05D005150 4.5e-73 281.6 2033 27.6
MD03G1024600 Malus domestica HOM05D004836 ORTHO05D005150 1.7e-72 279.6 2006 26.9
Prupe.7G022200 Prunus persica HOM05D004836 ORTHO05D005150 7.1e-71 274.2 841 36.4
CANSAT11G1576 Cannabis sativa HOM05D004836 ORTHO05D005150 9.3e-71 273.9 2082 26.6
Gohir.A01G091700 Gossypium hirsutum HOM05D004836 ORTHO05D005150 2.7e-70 272.3 748 36.9
TWI38G0981 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 6.7e-69 267.7 1926 27.4
CSS0003147 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 1.5e-68 266.5 487 47.6
FAN06G1091 Fragaria x ananassa HOM05D004836 ORTHO05D005150 3.3e-68 265.4 657 38.2
HanXRQChr03g0074011 Helianthus annuus HOM05D004836 ORTHO05D005150 3.3e-68 265.4 1044 31.9
MD11G1029700 Malus domestica HOM05D004836 ORTHO05D005150 1.6e-67 263.1 2049 27.3
Sc16g0008100 Simmondsia chinensis HOM05D004836 ORTHO05D005150 2.2e-67 262.7 1956 26.8
Sabra16G0241300 Salix brachista HOM05D004836 ORTHO05D005150 2.8e-67 262.3 2027 26.8
Ciclev10007227m.g Citrus clementina HOM05D004836 ORTHO05D005150 3.7e-67 261.9 2127 26.6
FAN01G1635 Fragaria x ananassa HOM05D004836 ORTHO05D005150 4.8e-67 261.5 658 38.6
Prupe.5G032900 Prunus persica HOM05D004836 ORTHO05D005150 3.1e-66 258.8 1958 27.0
FvH4_7g06090 Fragaria vesca HOM05D004836 ORTHO05D005150 2.0e-65 256.1 665 37.9
CsaV3_7G011380 Cucumis sativus L. HOM05D004836 ORTHO05D005150 2.6e-65 255.8 623 40.1
Potri.001G368200 Populus trichocarpa HOM05D004836 ORTHO05D005150 2.9e-64 252.3 1973 26.1
Nn1g03169 Nelumbo nucifera HOM05D004836 ORTHO05D005150 5.0e-64 251.5 1953 26.5
PGR083G2228 Punica granatum HOM05D004836 ORTHO05D005150 8.5e-64 250.8 705 36.3
RcHm_v2.0_Chr1g0333641 Rosa chinensis HOM05D004836 ORTHO05D005150 2.5e-63 249.2 824 33.5
Gohir.D13G135900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 5.5e-63 248.1 744 36.8
Sc03g0011420 Simmondsia chinensis HOM05D004836 ORTHO05D005150 3.6e-62 245.4 1967 25.8
Lsat_1_v5_gn_9_90560 Lactuca sativa HOM05D004836 ORTHO05D005150 7.9e-62 244.2 613 38.2
Sc03g0011330 Simmondsia chinensis HOM05D004836 ORTHO05D005150 1.0e-61 243.8 1959 25.7
Manes.03G141700 Manihot esculenta HOM05D004836 ORTHO05D005150 1.3e-61 243.4 820 34.8
Rhsim04G0012500 Rhododendron simsii HOM05D004836 ORTHO05D005150 1.3e-61 243.4 830 31.8
Gohir.A13G132500 Gossypium hirsutum HOM05D004836 ORTHO05D005150 4.3e-60 238.4 787 34.8
Sed0002835 Sechium edule HOM05D004836 ORTHO05D005150 2.4e-58 232.6 1948 26.5
CANSAT35G0529 Cannabis sativa HOM05D004836 ORTHO05D005150 2.0e-57 229.6 767 30.8
HanXRQChr13g0408421 Helianthus annuus HOM05D004836 ORTHO05D005150 2.0e-57 229.6 835 33.5
Hund23108 Selenicereus undatus HOM05D004836 ORTHO05D005150 2.0e-57 229.6 628 39.0
FAN03G2987 Fragaria x ananassa HOM05D004836 ORTHO05D005150 3.4e-57 228.8 1988 26.4
Eucgr.F02046 Eucalyptus grandis HOM05D004836 ORTHO05D005150 5.9e-57 228.0 645 36.7
Gorai.013G152400 Gossypium raimondii HOM05D004836 ORTHO05D005150 2.9e-56 225.7 2000 27.1
TWI39G0854 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 2.1e-54 219.5 460 46.3
MBI15_g03895_MAGBIO Magnolia biondii HOM05D004836 ORTHO05D005150 4.7e-54 218.4 1952 25.2
DCAR_013235 Daucus carota HOM05D004836 ORTHO05D005150 6.1e-54 218.0 1978 23.6
ClCG09G021380 Citrullus lanatus HOM05D004836 ORTHO05D005150 6.7e-53 214.5 633 37.4
Lj1A890T52 Lonicera japonica HOM05D004836 ORTHO05D005150 6.7e-53 214.5 684 36.1
vmacro11592 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 1.5e-52 213.4 617 31.6
Hund20644 Selenicereus undatus HOM05D004836 ORTHO05D005150 1.3e-51 210.3 622 38.9
Manes.15G059500 Manihot esculenta HOM05D004836 ORTHO05D005150 1.8e-50 206.5 833 32.8
MELO3C024947.2 Cucumis melo HOM05D004836 ORTHO05D005150 3.1e-50 205.7 653 37.8
EL10Ac4g07562 Beta vulgaris HOM05D004836 ORTHO05D005150 7.7e-49 201.1 652 36.2
Phvul.003G265300 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 2.2e-48 199.5 667 37.6
Phvul.007G023800 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 1.1e-47 197.2 669 36.3
Aqoxy4G02292 Aquilegia oxysepala HOM05D004836 ORTHO05D005150 3.2e-47 195.7 711 35.4
Lj5g0000015 Lotus japonicus HOM05D004836 ORTHO05D005150 7.2e-47 194.5 1918 24.8
arahy.Tifrunner.gnm1.ann1.LI7RG4 Arachis hypogaea HOM05D004836 ORTHO05D005150 2.1e-46 193.0 689 33.8
Ah.06g181450 Amaranthus hybridus HOM05D004836 ORTHO05D005150 2.7e-46 192.6 712 33.4
Glyma.20G112200 Glycine max HOM05D004836 ORTHO05D005150 8.0e-46 191.0 2009 25.6
ECA240G1942 Erigeron canadensis HOM05D004836 ORTHO05D000368 8.8e-45 187.6 1913 23.9
Lalb_Chr06g0166281 Lupinus albus HOM05D004836 ORTHO05D005150 3.7e-43 182.2 740 32.8
Ca_25650_v3 Cicer arietinum L. HOM05D004836 ORTHO05D005150 8.2e-43 181.0 661 34.9
Sed0003689 Sechium edule HOM05D004836 ORTHO05D005150 1.4e-42 180.3 640 34.7
AL8G31380 Arabidopsis lyrata HOM05D004836 ORTHO05D005150 1.8e-42 179.9 669 35.4
Glyma.10G277400 Glycine max HOM05D004836 ORTHO05D005150 3.1e-42 179.1 1955 25.1
VMungo0720G3177 Vigna mungo HOM05D004836 ORTHO05D005150 3.5e-41 175.6 645 35.0
MD00G1168400 Malus domestica HOM05D004836 ORTHO05D005150 6.5e-40 171.4 520 41.3
Lalb_Chr21g0309081 Lupinus albus HOM05D004836 ORTHO05D005150 8.5e-40 171.0 739 32.7
AUR62036461 Chenopodium quinoa HOM05D004836 ORTHO05D005150 1.9e-39 169.9 882 27.7
AUR62017108 Chenopodium quinoa HOM05D004836 ORTHO05D005150 3.2e-39 169.1 678 28.5
Carub.0008s1617 Capsella rubella HOM05D004836 ORTHO05D005150 1.2e-38 167.2 672 33.8
Hma1.2p1_1109F.1_g258180 Hydrangea macrophylla HOM05D004836 ORTHO05D005150 2.7e-38 166.0 287 39.0
arahy.Tifrunner.gnm1.ann1.D5NCPP Arachis hypogaea HOM05D004836 ORTHO05D005150 3.6e-38 165.6 648 33.0
Cpa.g.sc12.114 Carica papaya HOM05D004836 ORTHO05D005150 1.5e-36 160.2 566 31.3
COL.COLO4_09837 Corchorus olitorius HOM05D004836 ORTHO05D005150 5.7e-36 158.3 1930 24.0
AT5G55820 Arabidopsis thaliana HOM05D004836 ORTHO05D005150 2.2e-35 156.4 680 32.8
CDE04G0223 Ceratophyllum demersum HOM05D000588 ORTHO05D005150 2.0e-33 149.8 655 34.8
CARHR269190 Cardamine hirsuta HOM05D004836 ORTHO05D005150 1.0e-32 147.5 721 33.4
Sp6g17700 Schrenkiella parvula HOM05D004836 ORTHO05D005150 6.5e-32 144.8 662 34.1
vmacro11593 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 6.5e-32 144.8 261 55.2
TPR.G26309 Trifolium pratense HOM05D004836 ORTHO05D005150 8.5e-32 144.4 410 33.7
Medtr1g111660 Medicago truncatula HOM05D004836 ORTHO05D005150 3.2e-31 142.5 685 31.1
THA.LOC104811669 Tarenaya hassleriana HOM05D004836 ORTHO05D005150 6.8e-29 134.8 2103 24.1
Aa31LG3G11720 Aethionema arabicum HOM05D004836 ORTHO05D005150 8.3e-27 127.9 711 31.8
Thhalv10012421m.g Eutrema salsugineum HOM05D004836 ORTHO05D005150 1.1e-26 127.5 679 33.3
TWI39G0173 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 1.2e-25 124.0 294 32.3
Lj1A890T51 Lonicera japonica HOM05D004836 ORTHO05D005150 5.9e-25 121.7 932 24.1
MD11G1030200 Malus domestica HOM05D004836 ORTHO05D005150 5.9e-25 121.7 453 40.6
C03p16240 Brassica napus HOM05D004836 ORTHO05D005150 1.3e-24 120.6 650 32.9
AUR62006337 Chenopodium quinoa HOM05D004836 ORTHO05D005150 2.9e-24 119.4 516 28.1
BolC3t14046H Brassica oleracea HOM05D004836 ORTHO05D005150 6.1e-22 111.7 643 32.5
Actinidia30399 Actinidia chinensis HOM05D004836 ORTHO05D005150 2.3e-21 109.8 103 53.4
ATR0751G141 Amborella trichopoda HOM05D004836 ORTHO05D005150 4.0e-21 109.0 641 30.0
A03p13800 Brassica napus HOM05D004836 ORTHO05D005150 7.5e-20 104.8 728 31.0
HPP92_018201 Vanilla planifolia HOM05D004836 ORTHO05D005150 2.8e-19 102.8 720 25.7
Psat6g230520 Pisum sativum HOM05D004836 ORTHO05D005150 3.7e-19 102.4 708 27.7
BraA03t10683Z Brassica rapa HOM05D004836 ORTHO05D005150 6.3e-19 101.7 710 31.0
AUR62044127 Chenopodium quinoa HOM05D004836 ORTHO05D005150 4.1e-18 99.0 433 28.9
MD03G1025800 Malus domestica HOM05D004836 ORTHO05D005150 4.3e-15 89.0 83 66.3
arahy.Tifrunner.gnm1.ann1.TB163P Arachis hypogaea HOM05D004836 ORTHO05D005150 9.5e-15 87.8 188 37.8
Os09g0477700 Oryza sativa ssp. japonica HOM05D028105 ORTHO05D005150 1.6e-14 87.0 508 27.2
Actinidia30401 Actinidia chinensis HOM05D004836 ORTHO05D005150 6.1e-14 85.1 67 64.2
SEGI_26437 Sequoiadendron giganteum HOM05D014698 ORTHO05D016532 1.5e-12 80.5 406 29.1
TWI39G0060 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 2.0e-12 80.1 308 25.3
PSO541G5284 Papaver somniferum HOM05D004836 ORTHO05D005150 3.4e-12 79.3 246 31.3
unitig_22.g5946 Utricularia gibba HOM05D004836 ORTHO05D005150 5.8e-12 78.6 74 52.7
SEGI_04158 Sequoiadendron giganteum HOM05D014698 ORTHO05D016532 9.8e-12 77.8 108 53.7
TPR.G26295 Trifolium pratense HOM05D004836 ORTHO05D005150 2.9e-11 76.3 185 33.5
Zm00001eb316050 Zea mays HOM05D028105 ORTHO05D005150 1.6e-09 70.5 449 33.9
ECA234G1395 Erigeron canadensis HOM05D004805 ORTHO05D005756 6.0e-09 68.6 77 48.1
BcaC01g06394 Brassica carinata HOM05D004836 ORTHO05D005150 1.0e-08 67.8 64 48.4
CDE02G2584 Ceratophyllum demersum HOM05D004836 ORTHO05D005150 1.0e-08 67.8 59 67.8
BcaB08g35940 Brassica carinata HOM05D004836 ORTHO05D005150 3.9e-08 65.9 247 27.5
ATR0712G030 Amborella trichopoda HOM05D004836 ORTHO05D005150 1.1e-07 64.3 226 29.2
BcaB08g35941 Brassica carinata HOM05D004836 ORTHO05D005150 1.1e-07 64.3 211 32.7
MD00G1168200 Malus domestica HOM05D004836 ORTHO05D005150 1.5e-07 63.9 185 34.1
Psat2g132080 Pisum sativum HOM05D004836 ORTHO05D005150 2.5e-07 63.2 226 27.9
RhsimUnG0156400 Rhododendron simsii HOM05D000074 ORTHO05D001262 2.5e-07 63.2 55 54.5
HanXRQChr03g0074021 Helianthus annuus HOM05D004836 ORTHO05D005150 9.5e-07 61.2 61 45.9
CBR_g22984 Chara braunii HOM05D014698 ORTHO05D016532 1.6e-06 60.5 63 46.0
Pp3c1_42830 Physcomitrium patens HOM05D014698 ORTHO05D016532 1.6e-06 60.5 73 42.5


User provided reference genes

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