Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g065590.4 Solanum lycopersicum HOM05D004805 ORTHO05D005756 1.3e-182 642.9 321 100.0
Sopen07g033800 Solanum pennellii HOM05D004805 ORTHO05D005756 2.4e-136 489.2 252 97.2
PGSC0003DMG400022170 Solanum tuberosum HOM05D004805 ORTHO05D005756 1.9e-125 453.0 231 96.1
CAN.G623.13 Capsicum annuum HOM05D004805 ORTHO05D005756 3.4e-122 442.2 248 87.1
Peaxi162Scf00139g01316 Petunia axillaris HOM05D004805 ORTHO05D005756 1.9e-117 426.4 248 87.1
Cc00_g18290 Coffea canephora HOM05D004805 ORTHO05D005756 9.7e-101 370.9 242 75.2
Nitab4.5_0002736g0040 Nicotiana tabacum HOM05D004805 ORTHO05D005756 8.2e-100 367.9 195 91.3
CSS0002120 Camellia sinensis var. sinensis HOM05D004805 ORTHO05D005756 2.2e-97 359.8 248 69.8
Nitab4.5_0007415g0050 Nicotiana tabacum HOM05D004805 ORTHO05D005756 5.0e-97 358.6 196 88.8
Actinidia30402 Actinidia chinensis HOM05D004805 ORTHO05D005756 8.5e-97 357.8 249 71.1
SGA_v2.0_scaffold44G16806 Striga asiatica HOM05D001081 ORTHO05D003320 1.4e-96 357.1 243 71.6
Dinv10336 Davidia involucrata HOM05D004805 ORTHO05D005756 1.2e-95 354.0 243 70.8
MSTRG.27026 Avicennia marina HOM05D004805 ORTHO05D005756 4.7e-95 352.1 247 69.6
SalBow4G0417 Salvia bowleyana HOM05D004805 ORTHO05D005756 1.0e-94 350.9 272 64.7
LjContig00081g0004731 Lotus japonicus HOM05D004805 ORTHO05D005756 1.4e-94 350.5 243 69.5
Cfa020188 Carpinus fangiana HOM05D004805 ORTHO05D005756 2.3e-94 349.7 243 69.1
Haze_09828 Corylus avellana HOM05D004805 ORTHO05D005756 5.1e-94 348.6 243 68.7
Rhsim06G0229900 Rhododendron simsii HOM05D004805 ORTHO05D005756 1.1e-93 347.4 248 67.7
DCAR_013232 Daucus carota HOM05D004805 ORTHO05D005756 2.6e-93 346.3 243 68.7
CsaV3_3G004240 Cucumis sativus L. HOM05D004805 ORTHO05D005756 5.7e-93 345.1 250 66.0
Psat2g007280 Pisum sativum HOM05D004805 ORTHO05D005756 5.7e-93 345.1 248 66.5
TPR.G8592 Trifolium pratense HOM05D004805 ORTHO05D005756 5.7e-93 345.1 243 68.7
Actinidia05003 Actinidia chinensis HOM05D004805 ORTHO05D005756 7.4e-93 344.7 248 67.7
Nn1g07520 Nelumbo nucifera HOM05D004805 ORTHO05D005756 7.4e-93 344.7 245 70.6
Lalb_Chr09g0322761 Lupinus albus HOM05D004805 ORTHO05D005756 2.2e-92 343.2 243 67.5
Atru.chr9.1539 Acer truncatum HOM05D004805 ORTHO05D005756 2.8e-92 342.8 243 67.9
CiPaw.12G138400 Carya illinoinensis HOM05D004805 ORTHO05D005756 2.8e-92 342.8 243 69.1
arahy.Tifrunner.gnm1.ann1.KL44N8 Arachis hypogaea HOM05D004805 ORTHO05D005756 8.2e-92 341.3 244 68.9
CANSAT11G2385 Cannabis sativa HOM05D004805 ORTHO05D005756 8.2e-92 341.3 243 68.7
PSO832G0973 Papaver somniferum HOM05D004805 ORTHO05D005756 8.2e-92 341.3 243 66.7
Lj1C890G11 Lonicera japonica HOM05D004805 ORTHO05D005756 1.4e-91 340.5 243 70.4
ECA234G3028 Erigeron canadensis HOM05D004805 ORTHO05D005756 4.1e-91 339.0 243 68.3
Lj1g0004670 Lotus japonicus HOM05D004805 ORTHO05D005756 4.1e-91 339.0 243 67.5
Aqoxy4G03118 Aquilegia oxysepala HOM05D004805 ORTHO05D005756 7.0e-91 338.2 242 67.8
arahy.Tifrunner.gnm1.ann1.1A96RS Arachis hypogaea HOM05D004805 ORTHO05D005756 7.0e-91 338.2 244 68.0
PSO063G7513 Papaver somniferum HOM05D004805 ORTHO05D005756 7.0e-91 338.2 243 66.7
Medtr5g095960 Medicago truncatula HOM05D004805 ORTHO05D005756 9.1e-91 337.8 243 66.7
Prupe.3G149500 Prunus persica HOM05D004805 ORTHO05D005756 9.1e-91 337.8 243 67.5
ClCG10G004450 Citrullus lanatus HOM05D004805 ORTHO05D005756 1.2e-90 337.4 251 65.7
Ca_06397_v3 Cicer arietinum L. HOM05D004805 ORTHO05D005756 2.0e-90 336.7 243 66.7
Glyma.17G150300 Glycine max HOM05D004805 ORTHO05D005756 2.0e-90 336.7 243 66.3
Sed0016007 Sechium edule HOM05D004805 ORTHO05D005756 2.6e-90 336.3 250 64.0
FAN25G0449 Fragaria x ananassa HOM05D004805 ORTHO05D005756 3.5e-90 335.9 243 65.8
Duzib268G0855 Durio zibethinus HOM05D004805 ORTHO05D005756 4.5e-90 335.5 243 67.9
Glyma.14G013400 Glycine max HOM05D004805 ORTHO05D005756 4.5e-90 335.5 243 65.8
TAR626G0989 Trochodendron aralioides HOM05D004805 ORTHO05D005756 5.9e-90 335.1 265 63.0
Phvul.008G279200 Phaseolus vulgaris HOM05D004805 ORTHO05D005756 1.0e-89 334.3 243 64.6
Atru.chr13.2016 Acer truncatum HOM05D004805 ORTHO05D005756 1.7e-89 333.6 243 65.8
FvH4_3g11630 Fragaria vesca HOM05D004805 ORTHO05D005756 1.7e-89 333.6 243 65.0
FAN16G0962 Fragaria x ananassa HOM05D004805 ORTHO05D005756 1.7e-89 333.6 246 64.6
Gorai.004G033700 Gossypium raimondii HOM05D004805 ORTHO05D005756 1.7e-89 333.6 243 66.3
GSVIVG01014691001 Vitis vinifera HOM05D004805 ORTHO05D005756 1.7e-89 333.6 243 68.3
CAN.G849.12 Capsicum annuum HOM05D004805 ORTHO05D005756 5.0e-89 332.0 189 84.7
MD05G1261800 Malus domestica HOM05D004805 ORTHO05D005756 5.0e-89 332.0 243 66.7
RcHm_v2.0_Chr7g0241681 Rosa chinensis HOM05D004805 ORTHO05D005756 6.5e-89 331.6 243 65.8
Ciclev10009329m.g Citrus clementina HOM05D004805 ORTHO05D005756 8.5e-89 331.3 243 65.4
Aa31LG3G11710 Aethionema arabicum HOM05D004805 ORTHO05D005756 1.4e-88 330.5 243 65.0
BcaB01g04372 Brassica carinata HOM05D004805 ORTHO05D005756 1.9e-88 330.1 243 65.8
HanXRQChr03g0074031 Helianthus annuus HOM05D004805 ORTHO05D005756 1.9e-88 330.1 238 67.6
PGR142G3095 Punica granatum HOM05D004805 ORTHO05D005756 3.2e-88 329.3 243 66.7
THA.LOC104811668 Tarenaya hassleriana HOM05D004805 ORTHO05D005756 3.2e-88 329.3 246 65.4
MELO3C014119.2 Cucumis melo HOM05D004805 ORTHO05D005756 5.5e-88 328.6 288 58.7
RcHm_v2.0_Chr5g0018651 Rosa chinensis HOM05D004805 ORTHO05D005756 5.5e-88 328.6 243 65.0
Lsat_1_v5_gn_9_89740 Lactuca sativa HOM05D004805 ORTHO05D005756 4.7e-87 325.5 246 65.9
BcaC01g06393 Brassica carinata HOM05D004805 ORTHO05D005756 1.8e-86 323.6 243 63.8
BcaC04g20199 Brassica carinata HOM05D004805 ORTHO05D005756 2.3e-86 323.2 243 64.6
Carub.0008s1616 Capsella rubella HOM05D004805 ORTHO05D005756 2.3e-86 323.2 243 64.2
Sp6g17690 Schrenkiella parvula HOM05D004805 ORTHO05D005756 3.0e-86 322.8 243 64.2
BcaB08g35939 Brassica carinata HOM05D004805 ORTHO05D005756 6.7e-86 321.6 243 64.6
Carub.0005s0937 Capsella rubella HOM05D004805 ORTHO05D005756 6.7e-86 321.6 243 65.0
Carub.0005s0950 Capsella rubella HOM05D004805 ORTHO05D005756 6.7e-86 321.6 243 65.0
CARHR269130 Cardamine hirsuta HOM05D004805 ORTHO05D005756 1.5e-85 320.5 243 64.6
Eucgr.F03688 Eucalyptus grandis HOM05D004805 ORTHO05D005756 5.7e-85 318.5 243 63.4
AL8G31370 Arabidopsis lyrata HOM05D004805 ORTHO05D005756 2.8e-84 316.2 243 65.0
AT5G55810 Arabidopsis thaliana HOM05D004805 ORTHO05D005756 4.8e-84 315.5 243 63.0
EL10Ac1g00341 Beta vulgaris HOM05D004805 ORTHO05D005756 8.2e-84 314.7 248 63.7
ATR0090G032 Amborella trichopoda HOM05D004805 ORTHO05D005756 5.3e-83 312.0 232 65.1
Gohir.D08G035700 Gossypium hirsutum HOM05D004805 ORTHO05D005756 4.2e-80 302.4 243 61.7
Manes.03G141600 Manihot esculenta HOM05D004805 ORTHO05D005756 5.5e-80 302.0 243 61.3
Potri.005G032300 Populus trichocarpa HOM05D004805 ORTHO05D005756 1.6e-79 300.4 246 59.3
Gohir.A08G025200 Gossypium hirsutum HOM05D004805 ORTHO05D005756 2.1e-79 300.1 243 61.3
Potri.013G021900 Populus trichocarpa HOM05D004805 ORTHO05D005756 3.6e-79 299.3 243 59.7
Sabra05G0034900 Salix brachista HOM05D004805 ORTHO05D005756 6.1e-79 298.5 246 58.9
Duzib213G0036 Durio zibethinus HOM05D004805 ORTHO05D005756 8.0e-79 298.1 243 60.5
TWI38G2348 Tripterygium wilfordii HOM05D004805 ORTHO05D005756 1.8e-78 297.0 199 70.4
HPP92_025829 Vanilla planifolia HOM05D004805 ORTHO05D005756 4.0e-78 295.8 243 62.1
vmacro11591 Vaccinium macrocarpon HOM05D004805 ORTHO05D005756 4.4e-77 292.4 259 57.9
MD10G1240100 Malus domestica HOM05D004805 ORTHO05D005756 2.2e-76 290.0 199 70.4
Zm00001eb191530 Zea mays HOM05D004805 ORTHO05D005756 2.2e-76 290.0 243 58.8
QL08p004083 Quercus lobata HOM05D004805 ORTHO05D005756 2.8e-76 289.7 200 68.5
Hma1.2p1_1402F.1_g281100 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 1.1e-75 287.7 216 66.2
SGA_v2.0_scaffold192G40544 Striga asiatica HOM05D001081 ORTHO05D003320 7.0e-75 285.0 237 62.9
Hund27237 Selenicereus undatus HOM05D004805 ORTHO05D005756 5.9e-74 282.0 223 64.6
C03p16250 Brassica napus HOM05D004805 ORTHO05D005756 3.8e-73 279.3 216 62.0
A03p13810 Brassica napus HOM05D004805 ORTHO05D005756 6.5e-73 278.5 216 61.1
Migut.F01027 Erythranthe guttata HOM05D004805 ORTHO05D005756 6.5e-73 278.5 247 61.5
AUR62022629 Chenopodium quinoa HOM05D004805 ORTHO05D005756 9.4e-72 274.6 243 58.4
VMungo0647G2576 Vigna mungo HOM05D004805 ORTHO05D005756 1.6e-71 273.9 193 65.3
C09p46750 Brassica napus HOM05D004805 ORTHO05D005756 2.7e-71 273.1 217 62.2
BolC9t57526H Brassica oleracea HOM05D004805 ORTHO05D005756 2.7e-71 273.1 217 62.2
A10p13030 Brassica napus HOM05D004805 ORTHO05D005756 6.1e-71 271.9 217 62.2
BraA10t43397Z Brassica rapa HOM05D004805 ORTHO05D005756 3.0e-70 269.6 217 61.3
Sc16g0008090 Simmondsia chinensis HOM05D004805 ORTHO05D005756 3.0e-70 269.6 243 56.8
Mapoly0011s0011 Marchantia polymorpha HOM05D004805 ORTHO05D005756 5.2e-70 268.9 243 56.4
Pp3c20_23380 Physcomitrium patens HOM05D004805 ORTHO05D005756 5.2e-70 268.9 243 53.5
Thecc.07G013300 Theobroma cacao HOM05D004805 ORTHO05D005756 1.2e-69 267.7 175 71.4
AagrBONN_evm.TU.Sc2ySwM_362.484 Anthoceros agrestis HOM05D004805 ORTHO05D005756 1.5e-69 267.3 243 53.9
Medtr3g007850 Medicago truncatula HOM05D004805 ORTHO05D005756 4.4e-69 265.8 194 66.0
Pp3c10_25720 Physcomitrium patens HOM05D004805 ORTHO05D005756 9.8e-69 264.6 243 52.7
Pp3c3_17230 Physcomitrium patens HOM05D004805 ORTHO05D005756 4.5e-66 255.8 243 49.4
Lsat_1_v5_gn_4_137701 Lactuca sativa HOM05D004805 ORTHO05D005756 9.5e-64 248.1 196 62.8
AagrBONN_evm.TU.Sc2ySwM_228.3487 Anthoceros agrestis HOM05D004805 ORTHO05D005756 1.4e-62 244.2 206 56.3
Prupe.4G103800 Prunus persica HOM05D004805 ORTHO05D005756 1.4e-62 244.2 243 53.1
AUR62004423 Chenopodium quinoa HOM05D004805 ORTHO05D005756 2.3e-62 243.4 163 69.9
Pp3c13_13680 Physcomitrium patens HOM05D004805 ORTHO05D005756 1.5e-61 240.7 243 47.7
CARHR269180 Cardamine hirsuta HOM05D004805 ORTHO05D005756 2.7e-58 229.9 163 66.3
AagrBONN_evm.TU.Sc2ySwM_344.1047 Anthoceros agrestis HOM05D004805 ORTHO05D005756 4.5e-58 229.2 191 57.6
CBR_g34363 Chara braunii HOM05D000019 ORTHO05D000002 4.5e-58 229.2 212 52.4
Hma1.2p1_1516F.1_g288260 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 4.5e-58 229.2 210 58.6
Lj3g0007860 Lotus japonicus HOM05D004805 ORTHO05D005756 1.6e-55 220.7 233 54.9
FAN21G3052 Fragaria x ananassa HOM05D004805 ORTHO05D005756 6.8e-54 215.3 197 55.8
SMO364G0361 Selaginella moellendorffii HOM05D004805 ORTHO05D005756 3.2e-51 206.5 217 47.0
Ah.05g180060 Amaranthus hybridus HOM05D004805 ORTHO05D005756 3.5e-50 203.0 179 59.8
AagrBONN_evm.TU.Sc2ySwM_344.1045 Anthoceros agrestis HOM05D004805 ORTHO05D005756 1.3e-49 201.1 199 51.8
TAR624G1110 Trochodendron aralioides HOM05D004805 ORTHO05D005756 5.0e-49 199.1 196 56.6
DCAR_000844 Daucus carota HOM05D004805 ORTHO05D007187 1.1e-48 198.0 172 59.9
Glyma.19G097900 Glycine max HOM05D004805 ORTHO05D005756 1.9e-48 197.2 142 65.5
Os02g0814900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 5.6e-48 195.7 262 45.8
BraA03t10684Z Brassica rapa HOM05D004805 ORTHO05D005756 1.6e-47 194.1 227 48.0
Rhsim04G0012600 Rhododendron simsii HOM05D004805 ORTHO05D005756 5.2e-46 189.1 166 59.0
BolC3t14047H Brassica oleracea HOM05D004805 ORTHO05D005756 4.9e-44 182.6 242 43.4
Thhalv10015421m.g Eutrema salsugineum HOM05D004805 ORTHO05D005756 2.4e-43 180.3 192 51.6
COL.COLO4_09836 Corchorus olitorius HOM05D004805 ORTHO05D005756 1.3e-41 174.5 128 68.8
Cpa.g.sc26.30 Carica papaya HOM05D004805 ORTHO05D005756 1.5e-40 171.0 106 75.5
ECA240G4670 Erigeron canadensis HOM05D004805 ORTHO05D005756 7.3e-40 168.7 102 76.5
PRCOL_00003123 Prasinoderma coloniale HOM05D004805 ORTHO05D005756 8.1e-39 165.2 218 41.3
unitig_0.g252 Utricularia gibba HOM05D004805 ORTHO05D005756 2.6e-37 160.2 102 73.5
Os09g0347900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 1.0e-33 148.3 105 64.8
Glyma.02G300600 Glycine max HOM05D004805 ORTHO05D005756 1.9e-32 144.1 102 66.7
PSO170G0902 Papaver somniferum HOM05D004805 ORTHO05D005756 1.8e-30 137.5 101 67.3
Hma1.2p1_0226F.1_g095340 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 2.9e-28 130.2 156 50.0
QL08p004070 Quercus lobata HOM05D000031 ORTHO05D005756 6.0e-26 122.5 211 38.4
Cfa025186 Carpinus fangiana HOM05D004805 ORTHO05D005756 2.8e-23 113.6 161 39.1
SEGI_22417 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 2.6e-21 107.1 97 55.7
ECA234G1395 Erigeron canadensis HOM05D004805 ORTHO05D005756 1.2e-18 98.2 67 70.1
Oeu037059.1 Olea europaea HOM05D004805 ORTHO05D005756 1.5e-16 91.3 66 69.7
CBR_g34381 Chara braunii HOM05D000019 ORTHO05D000048 2.4e-14 84.0 81 50.6
FAN24G2452 Fragaria x ananassa HOM05D004805 ORTHO05D005756 3.8e-12 76.6 54 63.0
SEGI_01519 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 4.2e-11 73.2 72 52.8
Cre14.g626950 Chlamydomonas reinhardtii HOM05D004805 ORTHO05D005756 3.0e-09 67.0 103 35.0
FAN16G1285 Fragaria x ananassa HOM05D004805 ORTHO05D005756 3.3e-08 63.5 43 67.4
SEGI_37983 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 9.6e-08 62.0 81 40.7
Migut.E01275 Erythranthe guttata HOM05D004805 ORTHO05D005756 9.0e-06 55.5 29 79.3


User provided reference genes

Program Settings