Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g065480.3 Solanum lycopersicum HOM05D005924 ORTHO05D007290 1.3e-73 279.6 143 100.0
PGSC0003DMG400022173 Solanum tuberosum HOM05D005924 ORTHO05D007290 9.4e-72 273.5 143 97.9
Sopen07g033690 Solanum pennellii HOM05D005924 ORTHO05D007290 3.6e-71 271.6 143 97.2
Nitab4.5_0000461g0270 Nicotiana tabacum HOM05D005924 ORTHO05D007290 9.1e-59 230.3 140 83.6
Peaxi162Scf01164g00127 Petunia axillaris HOM05D005924 ORTHO05D007290 1.6e-58 229.6 132 86.4
Nitab4.5_0014607g0010 Nicotiana tabacum HOM05D005924 ORTHO05D007290 5.9e-58 227.6 140 82.1
Haze_09815 Corylus avellana HOM05D005924 ORTHO05D007290 2.9e-41 172.2 140 64.3
Ca_06392_v3 Cicer arietinum L. HOM05D005924 ORTHO05D007290 4.2e-40 168.3 144 63.2
SGA_v2.0_scaffold8G04406 Striga asiatica HOM05D005924 ORTHO05D007290 4.2e-40 168.3 143 65.7
Cfa020200 Carpinus fangiana HOM05D005924 ORTHO05D007290 7.2e-40 167.5 141 63.8
Dinv10325 Davidia involucrata HOM05D005924 ORTHO05D007290 9.5e-40 167.2 144 63.2
Duzib213G0633 Durio zibethinus HOM05D005924 ORTHO05D007290 9.5e-40 167.2 143 62.2
Dinv40851 Davidia involucrata HOM05D005924 ORTHO05D007290 1.6e-39 166.4 141 62.4
Gohir.D05G383300 Gossypium hirsutum HOM05D005924 ORTHO05D007290 3.6e-39 165.2 143 60.1
QL11p054318 Quercus lobata HOM05D005924 ORTHO05D007290 4.7e-39 164.9 142 62.0
QL08p004337 Quercus lobata HOM05D005924 ORTHO05D007290 1.0e-38 163.7 142 61.3
Nn1g03196 Nelumbo nucifera HOM05D005924 ORTHO05D007290 2.3e-38 162.5 143 60.1
Psat2g007680 Pisum sativum HOM05D000001 ORTHO05D000003 2.3e-38 162.5 147 61.2
MSTRG.13019 Avicennia marina HOM05D005924 ORTHO05D007290 4.0e-38 161.8 141 60.3
Lalb_Chr04g0247881 Lupinus albus HOM05D005924 ORTHO05D007290 4.0e-38 161.8 143 62.9
PSO210G6324 Papaver somniferum HOM05D005924 ORTHO05D007290 4.0e-38 161.8 143 60.1
Thecc.07G014800 Theobroma cacao HOM05D005924 ORTHO05D007290 4.0e-38 161.8 138 63.8
TPR.G8617 Trifolium pratense HOM05D005924 ORTHO05D007290 4.0e-38 161.8 144 63.9
GSVIVG01014668001 Vitis vinifera HOM05D005924 ORTHO05D007290 4.0e-38 161.8 141 61.7
Ciclev10009817m.g Citrus clementina HOM05D005924 ORTHO05D007290 6.8e-38 161.0 143 62.2
PSO302G0279 Papaver somniferum HOM05D005924 ORTHO05D007290 6.8e-38 161.0 143 58.7
Oeu057095.1 Olea europaea HOM05D005924 ORTHO05D007290 1.2e-37 160.2 142 58.5
Glyma.02G300000 Glycine max HOM05D005924 ORTHO05D007290 1.5e-37 159.8 129 65.9
Glyma.14G013900 Glycine max HOM05D005924 ORTHO05D007290 1.5e-37 159.8 129 65.9
MD11G1201100 Malus domestica HOM05D005924 ORTHO05D007290 1.5e-37 159.8 141 60.3
Migut.H01759 Erythranthe guttata HOM05D005924 ORTHO05D007290 2.0e-37 159.5 145 61.4
Medtr5g095700 Medicago truncatula HOM05D005924 ORTHO05D007290 2.0e-37 159.5 147 61.9
Oeu049375.1 Olea europaea HOM05D005924 ORTHO05D007290 2.0e-37 159.5 143 56.6
Hma1.2p1_0036F.1_g022440 Hydrangea macrophylla HOM05D005924 ORTHO05D007290 5.7e-37 157.9 141 59.6
TWI38G0037 Tripterygium wilfordii HOM05D005924 ORTHO05D007290 9.8e-37 157.1 148 57.4
TAR629G1982 Trochodendron aralioides HOM05D001060 ORTHO05D000905 1.3e-36 156.8 145 60.0
Prupe.4G242300 Prunus persica HOM05D005924 ORTHO05D007290 2.2e-36 156.0 142 57.7
COL.COLO4_09820 Corchorus olitorius HOM05D005924 ORTHO05D007290 2.8e-36 155.6 144 58.3
Gohir.A04G006200 Gossypium hirsutum HOM05D005924 ORTHO05D007290 2.8e-36 155.6 143 58.0
Sabra16G0240500 Salix brachista HOM05D005924 ORTHO05D007290 2.8e-36 155.6 149 59.1
MBI19_g12833_MAGBIO Magnolia biondii HOM05D005924 ORTHO05D007290 4.9e-36 154.8 143 57.3
Lj6g0020710 Lotus japonicus HOM05D005924 ORTHO05D007290 6.3e-36 154.5 141 62.4
CSS0023895 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 8.3e-36 154.1 141 58.9
Phvul.008G278700 Phaseolus vulgaris HOM05D005924 ORTHO05D007290 1.1e-35 153.7 129 63.6
VMungo0647G1823 Vigna mungo HOM05D005924 ORTHO05D007290 1.1e-35 153.7 139 59.7
Aqoxy1G04252 Aquilegia oxysepala HOM05D005924 ORTHO05D007290 2.4e-35 152.5 144 59.0
MD03G1184300 Malus domestica HOM05D005924 ORTHO05D007290 2.4e-35 152.5 142 57.7
TWI39G1162 Tripterygium wilfordii HOM05D005924 ORTHO05D007290 3.1e-35 152.1 147 57.1
arahy.Tifrunner.gnm1.ann1.7P25LN Arachis hypogaea HOM05D005924 ORTHO05D007290 4.1e-35 151.8 143 62.2
arahy.Tifrunner.gnm1.ann1.RJW0MD Arachis hypogaea HOM05D005924 ORTHO05D007290 4.1e-35 151.8 143 62.2
CiPaw.12G137600 Carya illinoinensis HOM05D005924 ORTHO05D007290 4.1e-35 151.8 142 58.5
RcHm_v2.0_Chr5g0053761 Rosa chinensis HOM05D005924 ORTHO05D007290 4.1e-35 151.8 147 55.8
CSS0025987 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 5.4e-35 151.4 145 58.6
CSS0049690 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 5.4e-35 151.4 145 58.6
Cc05_g14880 Coffea canephora HOM05D005924 ORTHO05D007290 1.6e-34 149.8 140 56.4
Manes.15G060600 Manihot esculenta HOM05D005924 ORTHO05D007290 1.6e-34 149.8 144 55.6
FvH4_3g29370 Fragaria vesca HOM05D005924 ORTHO05D007290 3.5e-34 148.7 144 54.9
FAN11G0697 Fragaria x ananassa HOM05D005924 ORTHO05D007290 3.5e-34 148.7 144 54.9
ECA246G3128 Erigeron canadensis HOM05D005924 ORTHO05D007290 4.5e-34 148.3 144 58.3
Potri.001G367200 Populus trichocarpa HOM05D005924 ORTHO05D007290 4.5e-34 148.3 145 58.6
PGR083G1797 Punica granatum HOM05D005924 ORTHO05D007290 4.5e-34 148.3 142 55.6
EL10Ac4g07594 Beta vulgaris HOM05D005924 ORTHO05D007290 7.8e-34 147.5 149 58.4
ATR0624G098 Amborella trichopoda HOM05D005924 ORTHO05D007290 1.0e-33 147.1 146 55.5
AUR62036411 Chenopodium quinoa HOM05D005924 ORTHO05D007290 1.7e-33 146.4 149 56.4
HanXRQChr08g0231191 Helianthus annuus HOM05D005924 ORTHO05D007290 1.7e-33 146.4 143 55.9
Hund23125 Selenicereus undatus HOM05D005924 ORTHO05D007290 1.7e-33 146.4 141 58.9
Actinidia30411 Actinidia chinensis HOM05D005924 ORTHO05D007290 2.3e-33 146.0 143 57.3
AT5G55640 Arabidopsis thaliana HOM05D005924 ORTHO05D007290 2.3e-33 146.0 148 56.8
FAN25G0770 Fragaria x ananassa HOM05D005924 ORTHO05D007290 2.3e-33 146.0 141 54.6
Gorai.009G449900 Gossypium raimondii HOM05D005924 ORTHO05D007290 2.3e-33 146.0 124 60.5
CiPaw.11G203100 Carya illinoinensis HOM05D005924 ORTHO05D007290 2.9e-33 145.6 142 59.9
AUR62036442 Chenopodium quinoa HOM05D005924 ORTHO05D007290 2.9e-33 145.6 149 55.7
FAN21G3132 Fragaria x ananassa HOM05D005924 ORTHO05D007290 5.0e-33 144.8 144 53.5
THA.LOC104811656 Tarenaya hassleriana HOM05D005924 ORTHO05D007290 5.0e-33 144.8 150 56.0
Rhsim04G0012900 Rhododendron simsii HOM05D005924 ORTHO05D007290 6.6e-33 144.4 144 56.9
CANSAT11G0122 Cannabis sativa HOM05D005924 ORTHO05D007290 8.6e-33 144.1 152 53.9
DCAR_018844 Daucus carota HOM05D005924 ORTHO05D007290 8.6e-33 144.1 135 57.0
AUR62017085 Chenopodium quinoa HOM05D005924 ORTHO05D007290 2.5e-32 142.5 149 55.7
Thhalv10014966m.g Eutrema salsugineum HOM05D005924 ORTHO05D007290 2.8e-31 139.0 143 55.2
Lj8A178T78 Lonicera japonica HOM05D005924 ORTHO05D007290 3.6e-31 138.7 127 59.8
Sed0014433 Sechium edule HOM05D005924 ORTHO05D007290 3.6e-31 138.7 143 57.3
Lsat_1_v5_gn_5_1420 Lactuca sativa HOM05D005924 ORTHO05D007290 8.0e-31 137.5 142 56.3
Cpa.g.sc12.154 Carica papaya HOM05D005924 ORTHO05D007290 1.0e-30 137.1 124 58.9
Sp6g17560 Schrenkiella parvula HOM05D005924 ORTHO05D007290 1.8e-30 136.3 147 53.7
Actinidia26779 Actinidia chinensis HOM05D005924 ORTHO05D007290 5.2e-30 134.8 141 53.9
CDE10G1040 Ceratophyllum demersum HOM05D005924 ORTHO05D007290 5.2e-30 134.8 147 52.4
Oeu049390.1 Olea europaea HOM05D005924 ORTHO05D007290 5.2e-30 134.8 126 56.3
Carub.0008s1601 Capsella rubella HOM05D005924 ORTHO05D007290 6.8e-30 134.4 148 53.4
Sc16g0008020 Simmondsia chinensis HOM05D005924 ORTHO05D007290 6.8e-30 134.4 142 52.8
BcaC04g20212 Brassica carinata HOM05D005924 ORTHO05D007290 2.0e-29 132.9 132 57.6
C09p46620 Brassica napus HOM05D005924 ORTHO05D007290 2.0e-29 132.9 132 57.6
ClCG09G021250 Citrullus lanatus HOM05D005924 ORTHO05D007290 3.4e-29 132.1 143 55.2
vmacro09651 Vaccinium macrocarpon HOM05D005924 ORTHO05D007290 3.4e-29 132.1 142 52.8
CsaV3_7G015090 Cucumis sativus L. HOM05D005924 ORTHO05D007290 7.5e-29 131.0 143 54.5
Eucgr.F02053 Eucalyptus grandis HOM05D005924 ORTHO05D007290 9.8e-29 130.6 144 51.4
AL8G31220 Arabidopsis lyrata HOM05D005924 ORTHO05D007290 1.3e-28 130.2 137 56.2
Sed0006731 Sechium edule HOM05D005924 ORTHO05D007290 1.3e-28 130.2 141 53.2
CDE10G1343 Ceratophyllum demersum HOM05D005924 ORTHO05D007290 3.7e-28 128.6 144 50.0
unitig_0.g996 Utricularia gibba HOM05D005924 ORTHO05D007290 3.7e-28 128.6 144 52.8
BolC9t57514H Brassica oleracea HOM05D005924 ORTHO05D007290 6.4e-28 127.9 134 56.7
Ah.06g181380 Amaranthus hybridus HOM05D000864 ORTHO05D002353 1.4e-27 126.7 126 57.9
MBI16_g07767_MAGBIO Magnolia biondii HOM05D005924 ORTHO05D007290 1.4e-27 126.7 125 54.4
MELO3C024930.2 Cucumis melo HOM05D005924 ORTHO05D007290 1.8e-27 126.3 143 54.5
Actinidia37157 Actinidia chinensis HOM05D005924 ORTHO05D007290 3.5e-26 122.1 123 54.5
Atru.BG.148.p Acer truncatum HOM05D005924 ORTHO05D007290 2.3e-25 119.4 92 66.3
CARHR268960 Cardamine hirsuta HOM05D005924 ORTHO05D007290 2.3e-25 119.4 129 51.9
Aa31LG3G11590 Aethionema arabicum HOM05D005924 ORTHO05D007290 3.9e-25 118.6 154 46.8
BraA10t43385Z Brassica rapa HOM05D005924 ORTHO05D007290 5.0e-25 118.2 133 53.4
A10p12930 Brassica napus HOM05D005924 ORTHO05D007290 1.9e-24 116.3 133 53.4
SEGI_16066 Sequoiadendron giganteum HOM05D005924 ORTHO05D007290 9.5e-24 114.0 128 50.8
BcaB08g35925 Brassica carinata HOM05D005924 ORTHO05D007290 1.2e-23 113.6 130 52.3
Os03g0595200 Oryza sativa ssp. japonica HOM05D005924 ORTHO05D007290 3.6e-23 112.1 124 49.2
HPP92_006039 Vanilla planifolia HOM05D005924 ORTHO05D007290 1.4e-22 110.2 125 53.6
Manes.03G140800 Manihot esculenta HOM05D005924 ORTHO05D007290 5.2e-22 108.2 115 55.7
Zm00001eb049780 Zea mays HOM05D005924 ORTHO05D007290 1.2e-21 107.1 134 46.3
C09p47070 Brassica napus HOM05D005924 ORTHO05D007290 9.8e-21 104.0 128 51.6
Mapoly0038s0106 Marchantia polymorpha HOM05D005924 ORTHO05D007290 1.3e-20 103.6 145 44.8
Pp3c5_24890 Physcomitrium patens HOM05D005924 ORTHO05D007290 3.2e-19 99.0 136 42.6
TAR626G0711 Trochodendron aralioides HOM05D005924 ORTHO05D007290 3.2e-19 99.0 115 51.3
BcaC04g20171 Brassica carinata HOM05D005924 ORTHO05D007290 1.6e-18 96.7 93 59.1
Pp3c6_3770 Physcomitrium patens HOM05D005924 ORTHO05D007290 1.0e-17 94.0 137 41.6
arahy.Tifrunner.gnm1.ann1.HJ67LJ Arachis hypogaea HOM05D005924 ORTHO05D007290 1.3e-17 93.6 98 56.1
QL08p004311 Quercus lobata HOM05D005924 ORTHO05D007290 2.3e-17 92.8 123 47.2
BolC9t57844H Brassica oleracea HOM05D005924 ORTHO05D007290 1.9e-16 89.7 98 56.1
SMO145G0101 Selaginella moellendorffii HOM05D005924 ORTHO05D007290 9.5e-16 87.4 154 37.0
BcaC04g19914 Brassica carinata HOM05D005924 ORTHO05D007290 8.1e-15 84.3 98 54.1
Os03g0412200 Oryza sativa ssp. japonica HOM05D005924 ORTHO05D007290 4.9e-12 75.1 91 45.1
Zm00001eb019850 Zea mays HOM05D005924 ORTHO05D007290 2.8e-07 59.3 101 37.6
PSO210G6050 Papaver somniferum HOM05D000045 ORTHO05D000067 4.7e-07 58.5 101 39.6
arahy.Tifrunner.gnm1.ann1.7WZH36 Arachis hypogaea HOM05D005924 ORTHO05D007290 1.1e-06 57.4 53 54.7


User provided reference genes

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