Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g065460.1 Solanum lycopersicum HOM05D003857 ORTHO05D004454 2.4e-54 215.3 115 100.0
Sopen07g033670 Solanum pennellii HOM05D003857 ORTHO05D004454 4.6e-53 211.1 115 98.3
PGSC0003DMG400022174 Solanum tuberosum HOM05D003857 ORTHO05D004454 1.5e-51 206.1 115 95.7
CAN.G337.6 Capsicum annuum HOM05D003857 ORTHO05D004454 2.3e-36 155.6 115 74.8
Nitab4.5_0000461g0260 Nicotiana tabacum HOM05D003857 ORTHO05D004454 2.6e-32 142.1 107 75.7
Nitab4.5_0006886g0010 Nicotiana tabacum HOM05D003857 ORTHO05D004454 1.6e-29 132.9 100 75.0
Oeu014353.1 Olea europaea HOM05D003857 ORTHO05D004454 1.7e-23 112.8 98 62.2
SalBow8G3453 Salvia bowleyana HOM05D003857 ORTHO05D004454 1.1e-22 110.2 102 57.8
HanXRQChr05g0161821 Helianthus annuus HOM05D003857 ORTHO05D004454 2.5e-22 109.0 86 61.6
Rhsim06G0228800 Rhododendron simsii HOM05D003857 ORTHO05D004454 2.5e-22 109.0 86 69.8
Cc05_g14870 Coffea canephora HOM05D003857 ORTHO05D004454 5.5e-22 107.8 99 58.6
vmacro22708 Vaccinium macrocarpon HOM05D003857 ORTHO05D004454 5.5e-22 107.8 82 68.3
Actinidia05015 Actinidia chinensis HOM05D003857 ORTHO05D004454 3.5e-21 105.1 87 66.7
MSTRG.13018 Avicennia marina HOM05D003857 ORTHO05D004454 7.9e-21 104.0 84 61.9
TAR629G0922 Trochodendron aralioides HOM05D003857 ORTHO05D004454 7.9e-21 104.0 86 60.5
MSTRG.14482 Avicennia marina HOM05D003857 ORTHO05D004454 3.9e-20 101.7 85 62.4
Nn1g07497 Nelumbo nucifera HOM05D003857 ORTHO05D004454 2.5e-19 99.0 86 58.1
EL10Ac4g07592 Beta vulgaris HOM05D003857 ORTHO05D004454 9.7e-19 97.1 86 55.8
Migut.H01760 Erythranthe guttata HOM05D003857 ORTHO05D004454 9.7e-19 97.1 83 60.2
Atru.chr2.3676 Acer truncatum HOM05D003857 ORTHO05D004454 2.8e-18 95.5 87 56.3
Hma1.2p1_0889F.1_g232820 Hydrangea macrophylla HOM05D003857 ORTHO05D004454 2.8e-18 95.5 87 60.9
Oeu041436.1 Olea europaea HOM05D003857 ORTHO05D004454 2.8e-18 95.5 102 53.9
MD03G1183900 Malus domestica HOM05D003857 ORTHO05D004454 6.3e-18 94.4 109 48.6
Manes.15G060900 Manihot esculenta HOM05D003857 ORTHO05D004454 8.2e-18 94.0 90 50.0
TWI38G0553 Tripterygium wilfordii HOM05D003857 ORTHO05D004454 1.4e-17 93.2 96 54.2
MD11G1200800 Malus domestica HOM05D003857 ORTHO05D004454 2.4e-17 92.4 109 47.7
FvH4_3g29390 Fragaria vesca HOM05D003857 ORTHO05D004454 3.1e-17 92.0 92 52.2
FAN16G1576 Fragaria x ananassa HOM05D003857 ORTHO05D004454 3.1e-17 92.0 92 52.2
FAN25G1727 Fragaria x ananassa HOM05D003857 ORTHO05D004454 3.1e-17 92.0 92 52.2
SGA_v2.0_scaffold8G04405 Striga asiatica HOM05D003857 ORTHO05D004454 4.1e-17 91.7 86 55.8
AUR62036444 Chenopodium quinoa HOM05D003857 ORTHO05D004454 5.3e-17 91.3 91 51.6
FAN21G0934 Fragaria x ananassa HOM05D003857 ORTHO05D004454 5.3e-17 91.3 92 51.1
QL08p004552 Quercus lobata HOM05D003857 ORTHO05D004454 5.3e-17 91.3 86 54.7
FAN11G0618 Fragaria x ananassa HOM05D003857 ORTHO05D004454 6.9e-17 90.9 90 53.3
Sc03g0011180 Simmondsia chinensis HOM05D003857 ORTHO05D004454 9.0e-17 90.5 83 59.0
GSVIVG01003487001 Vitis vinifera HOM05D003857 ORTHO05D004454 9.0e-17 90.5 86 48.8
Aqoxy1G04245 Aquilegia oxysepala HOM05D003857 ORTHO05D004454 1.2e-16 90.1 114 48.2
QL08p004432 Quercus lobata HOM05D003857 ORTHO05D004454 1.5e-16 89.7 86 53.5
Prupe.4G242100 Prunus persica HOM05D003857 ORTHO05D004454 2.6e-16 89.0 92 53.3
SGA_v2.0_scaffold42G15994 Striga asiatica HOM05D003857 ORTHO05D004454 3.4e-16 88.6 107 51.4
MBI16_g22432_MAGBIO Magnolia biondii HOM05D003857 ORTHO05D004454 4.5e-16 88.2 85 50.6
RcHm_v2.0_Chr5g0053811 Rosa chinensis HOM05D003857 ORTHO05D004454 1.0e-15 87.0 87 54.0
Manes.03G140433 Manihot esculenta HOM05D003857 ORTHO05D004454 1.3e-15 86.7 92 48.9
Manes.03G140500 Manihot esculenta HOM05D003857 ORTHO05D004454 1.3e-15 86.7 92 48.9
COL.COLO4_09818 Corchorus olitorius HOM05D003857 ORTHO05D004454 2.2e-15 85.9 93 51.6
TPR.G10580 Trifolium pratense HOM05D003857 ORTHO05D004454 2.2e-15 85.9 86 47.7
AUR62017087 Chenopodium quinoa HOM05D003857 ORTHO05D004454 2.9e-15 85.5 84 51.2
Potri.001G366900 Populus trichocarpa HOM05D003857 ORTHO05D004454 5.0e-15 84.7 95 47.4
Rhsim04G0013000 Rhododendron simsii HOM05D003857 ORTHO05D004454 1.1e-14 83.6 87 52.9
Sabra16G0240200 Salix brachista HOM05D003857 ORTHO05D004454 1.1e-14 83.6 95 47.4
Hund01891 Selenicereus undatus HOM05D003857 ORTHO05D004454 1.9e-14 82.8 96 49.0
Sc21g0003640 Simmondsia chinensis HOM05D003857 ORTHO05D004454 4.2e-14 81.6 102 47.1
DCAR_002236 Daucus carota HOM05D003857 ORTHO05D004454 5.5e-14 81.3 86 50.0
CANSAT11G1184 Cannabis sativa HOM05D003857 ORTHO05D004454 9.4e-14 80.5 120 48.3
PGR083G2342 Punica granatum HOM05D003857 ORTHO05D004454 9.4e-14 80.5 108 45.4
Thecc.07G015100 Theobroma cacao HOM05D003857 ORTHO05D004454 9.4e-14 80.5 87 50.6
Ciclev10009964m.g Citrus clementina HOM05D003857 ORTHO05D004454 1.6e-13 79.7 83 51.8
CiPaw.12G137500 Carya illinoinensis HOM05D003857 ORTHO05D004454 2.1e-13 79.3 92 45.7
Glyma.07G267300 Glycine max HOM05D003857 ORTHO05D004454 2.1e-13 79.3 88 44.3
RcHm_v2.0_Chr5g0000661 Rosa chinensis HOM05D003857 ORTHO05D004454 2.7e-13 79.0 86 45.3
Thecc.06G238500 Theobroma cacao HOM05D003857 ORTHO05D004454 3.6e-13 78.6 86 44.2
Haze_07004 Corylus avellana HOM05D003857 ORTHO05D004454 4.6e-13 78.2 91 44.0
Glyma.09G013000 Glycine max HOM05D003857 ORTHO05D004454 6.1e-13 77.8 97 43.3
Lalb_Chr15g0088131 Lupinus albus HOM05D003857 ORTHO05D004454 6.1e-13 77.8 88 43.2
Sp7g14930 Schrenkiella parvula HOM05D003857 ORTHO05D004454 6.1e-13 77.8 87 46.0
THA.LOC104815698 Tarenaya hassleriana HOM05D003857 ORTHO05D004454 7.9e-13 77.4 99 52.5
BcaNung00200 Brassica carinata HOM05D003857 ORTHO05D004454 1.0e-12 77.0 87 44.8
BraA08t33236Z Brassica rapa HOM05D003857 ORTHO05D004454 1.0e-12 77.0 95 44.2
MD00G1056900 Malus domestica HOM05D003857 ORTHO05D004454 1.0e-12 77.0 86 43.0
Phvul.003G085900 Phaseolus vulgaris HOM05D003857 ORTHO05D004454 1.0e-12 77.0 88 43.2
BraA03t14073Z Brassica rapa HOM05D003857 ORTHO05D004454 1.4e-12 76.6 96 43.8
Thhalv10027070m.g Eutrema salsugineum HOM05D003857 ORTHO05D004454 1.4e-12 76.6 95 45.3
Nn1g03204 Nelumbo nucifera HOM05D003857 ORTHO05D004454 1.4e-12 76.6 85 50.6
A08p12220 Brassica napus HOM05D003857 ORTHO05D004454 1.8e-12 76.3 95 44.2
Potri.006G017900 Populus trichocarpa HOM05D003857 ORTHO05D004454 1.8e-12 76.3 96 41.7
BolC1t02594H Brassica oleracea HOM05D003857 ORTHO05D004454 2.3e-12 75.9 88 46.6
A03p49780 Brassica napus HOM05D003857 ORTHO05D004454 3.9e-12 75.1 87 44.8
BcaC07g37984 Brassica carinata HOM05D003857 ORTHO05D004454 5.1e-12 74.7 95 43.2
C07p47840 Brassica napus HOM05D003857 ORTHO05D004454 5.1e-12 74.7 87 44.8
BolC7t45306H Brassica oleracea HOM05D003857 ORTHO05D004454 5.1e-12 74.7 87 44.8
BolC8t48365H Brassica oleracea HOM05D003857 ORTHO05D004454 5.1e-12 74.7 95 43.2
BraA01t02029Z Brassica rapa HOM05D003857 ORTHO05D004454 5.1e-12 74.7 87 43.7
Lj4g0009185 Lotus japonicus HOM05D003857 ORTHO05D004454 5.1e-12 74.7 87 42.5
A01p21200 Brassica napus HOM05D003857 ORTHO05D004454 6.7e-12 74.3 87 42.5
CsaV3_3G004060 Cucumis sativus L. HOM05D003857 ORTHO05D004454 6.7e-12 74.3 83 50.6
Gohir.A01G091000 Gossypium hirsutum HOM05D003857 ORTHO05D004454 6.7e-12 74.3 94 46.8
Prupe.4G005500 Prunus persica HOM05D003857 ORTHO05D004454 6.7e-12 74.3 85 43.5
Sabra06G0013000 Salix brachista HOM05D003857 ORTHO05D004454 6.7e-12 74.3 96 40.6
AT4G16400 Arabidopsis thaliana HOM05D003857 ORTHO05D004454 8.8e-12 73.9 95 38.9
C01p26490 Brassica napus HOM05D003857 ORTHO05D004454 8.8e-12 73.9 87 43.7
Gohir.D01G076300 Gossypium hirsutum HOM05D003857 ORTHO05D004454 8.8e-12 73.9 94 45.7
Gorai.002G099500 Gossypium raimondii HOM05D003857 ORTHO05D004454 8.8e-12 73.9 94 45.7
BcaB06g25481 Brassica carinata HOM05D003857 ORTHO05D004454 1.1e-11 73.6 95 49.5
BraA01t04072Z Brassica rapa HOM05D003857 ORTHO05D004454 1.1e-11 73.6 96 47.9
Glyma.15G117900 Glycine max HOM05D003857 ORTHO05D004454 1.1e-11 73.6 97 41.2
C01p51910 Brassica napus HOM05D003857 ORTHO05D004454 2.0e-11 72.8 95 48.4
Potri.016G007101 Populus trichocarpa HOM05D003857 ORTHO05D004454 2.0e-11 72.8 88 42.0
Rhsim13G0142200 Rhododendron simsii HOM05D003857 ORTHO05D004454 2.0e-11 72.8 87 44.8
Sabra16G0011900 Salix brachista HOM05D003857 ORTHO05D004454 2.0e-11 72.8 86 39.5
THA.LOC104810291 Tarenaya hassleriana HOM05D003857 ORTHO05D004454 2.0e-11 72.8 99 48.5
A01p40370 Brassica napus HOM05D003857 ORTHO05D004454 2.5e-11 72.4 95 48.4
BolC1t05138H Brassica oleracea HOM05D003857 ORTHO05D004454 2.5e-11 72.4 95 48.4
Haze_09813 Corylus avellana HOM05D003857 ORTHO05D004454 2.5e-11 72.4 90 44.4
Atru.chr1.2307 Acer truncatum HOM05D003857 ORTHO05D004454 3.3e-11 72.0 86 41.9
PSO210G1156 Papaver somniferum HOM05D003857 ORTHO05D004454 3.3e-11 72.0 101 44.6
Sed0010782 Sechium edule HOM05D003857 ORTHO05D004454 3.3e-11 72.0 83 49.4
arahy.Tifrunner.gnm1.ann1.J6PND3 Arachis hypogaea HOM05D003857 ORTHO05D004454 4.3e-11 71.6 106 36.8
ClCG10G004230 Citrullus lanatus HOM05D003857 ORTHO05D004454 4.3e-11 71.6 83 49.4
ClCG10G004260 Citrullus lanatus HOM05D003857 ORTHO05D004454 4.3e-11 71.6 83 49.4
DCAR_030845 Daucus carota HOM05D003857 ORTHO05D004454 4.3e-11 71.6 86 44.2
Glyma.08G328700 Glycine max HOM05D003857 ORTHO05D004454 4.3e-11 71.6 84 50.0
AL7G38610 Arabidopsis lyrata HOM05D003857 ORTHO05D004454 5.7e-11 71.2 95 38.9
Gohir.A13G133501 Gossypium hirsutum HOM05D003857 ORTHO05D004454 5.7e-11 71.2 95 45.3
Gohir.D13G136800 Gossypium hirsutum HOM05D003857 ORTHO05D004454 5.7e-11 71.2 95 45.3
Gorai.013G153300 Gossypium raimondii HOM05D003857 ORTHO05D004454 5.7e-11 71.2 95 45.3
PSO210G4960 Papaver somniferum HOM05D003857 ORTHO05D004454 5.7e-11 71.2 101 42.6
ClCG01G010960 Citrullus lanatus HOM05D003857 ORTHO05D004454 7.4e-11 70.9 86 43.0
Thhalv10022264m.g Eutrema salsugineum HOM05D003857 ORTHO05D004454 7.4e-11 70.9 94 50.0
MELO3C026073.2 Cucumis melo HOM05D003857 ORTHO05D004454 9.7e-11 70.5 86 41.9
Glyma.18G078100 Glycine max HOM05D003857 ORTHO05D004454 9.7e-11 70.5 105 43.8
arahy.Tifrunner.gnm1.ann1.A9XG53 Arachis hypogaea HOM05D003857 ORTHO05D004454 1.3e-10 70.1 90 38.9
Carub.0007s2513 Capsella rubella HOM05D003857 ORTHO05D004454 1.7e-10 69.7 85 40.0
FvH4_3g00490 Fragaria vesca HOM05D003857 ORTHO05D004454 1.7e-10 69.7 87 42.5
Sp3g11350 Schrenkiella parvula HOM05D003857 ORTHO05D004454 1.7e-10 69.7 95 47.4
BolC5t34151H Brassica oleracea HOM05D003857 ORTHO05D004454 2.2e-10 69.3 94 48.9
Duzib192G0644 Durio zibethinus HOM05D003857 ORTHO05D004454 2.2e-10 69.3 87 41.4
Hma1.2p1_0036F.1_g022470 Hydrangea macrophylla HOM05D003857 ORTHO05D004454 2.2e-10 69.3 57 64.9
FAN25G3265 Fragaria x ananassa HOM05D003857 ORTHO05D004454 2.8e-10 68.9 87 41.4
Phvul.006G140400 Phaseolus vulgaris HOM05D003857 ORTHO05D004454 2.8e-10 68.9 86 41.9
Phvul.006G056400 Phaseolus vulgaris HOM05D003857 ORTHO05D004454 4.8e-10 68.2 96 46.9
Gohir.D06G162600 Gossypium hirsutum HOM05D003857 ORTHO05D004454 6.3e-10 67.8 89 40.4
Gorai.010G189800 Gossypium raimondii HOM05D003857 ORTHO05D004454 6.3e-10 67.8 89 40.4
MBI19_g22178_MAGBIO Magnolia biondii HOM05D003857 ORTHO05D004454 6.3e-10 67.8 65 52.3
CiPaw.09G107600 Carya illinoinensis HOM05D003857 ORTHO05D004454 8.2e-10 67.4 86 38.4
Ciclev10017306m.g Citrus clementina HOM05D003857 ORTHO05D004454 1.1e-09 67.0 83 39.8
Aa31LG2G12460 Aethionema arabicum HOM05D003857 ORTHO05D004454 1.4e-09 66.6 95 37.9
BcaC05g29205 Brassica carinata HOM05D003857 ORTHO05D004454 1.4e-09 66.6 95 47.4
C05p54780 Brassica napus HOM05D003857 ORTHO05D004454 1.4e-09 66.6 95 47.4
CARHR087760 Cardamine hirsuta HOM05D003857 ORTHO05D004454 1.4e-09 66.6 95 46.3
Cc09_g00510 Coffea canephora HOM05D003857 ORTHO05D004454 1.4e-09 66.6 87 42.5
Gohir.A06G156300 Gossypium hirsutum HOM05D003857 ORTHO05D004454 1.8e-09 66.2 89 39.3
A05p36390 Brassica napus HOM05D003857 ORTHO05D004454 2.4e-09 65.9 97 48.5
Cpa.g.c35467.2 Carica papaya HOM05D003857 ORTHO05D004454 2.4e-09 65.9 100 36.0
Manes.08G070300 Manihot esculenta HOM05D003857 ORTHO05D004454 2.4e-09 65.9 90 40.0
BraA05t22439Z Brassica rapa HOM05D003857 ORTHO05D004454 4.1e-09 65.1 95 46.3
Carub.0003s1252 Capsella rubella HOM05D003857 ORTHO05D004454 5.3e-09 64.7 96 44.8
Aa31LG8G380 Aethionema arabicum HOM05D003857 ORTHO05D004454 9.1e-09 63.9 95 43.2
Medtr5g095660 Medicago truncatula HOM05D003857 ORTHO05D004454 9.1e-09 63.9 93 44.1
Sed0020326 Sechium edule HOM05D003857 ORTHO05D004454 9.1e-09 63.9 84 41.7
AL3G24920 Arabidopsis lyrata HOM05D003857 ORTHO05D004454 1.2e-08 63.5 97 45.4
CsaV3_1G015520 Cucumis sativus L. HOM05D003857 ORTHO05D004454 1.2e-08 63.5 86 37.2
ATR0827G129 Amborella trichopoda HOM05D003857 ORTHO05D004454 1.5e-08 63.2 59 49.2
Glyma.17G006700 Glycine max HOM05D003857 ORTHO05D004454 2.0e-08 62.8 88 36.4
Migut.H01624 Erythranthe guttata HOM05D003857 ORTHO05D004454 2.6e-08 62.4 86 38.4
Phvul.008G278500 Phaseolus vulgaris HOM05D003857 ORTHO05D004454 2.6e-08 62.4 93 43.0
AT3G13175 Arabidopsis thaliana HOM05D003857 ORTHO05D004454 3.4e-08 62.0 97 45.4
TPR.G6011 Trifolium pratense HOM05D003857 ORTHO05D004454 3.4e-08 62.0 88 36.4
Actinidia35399 Actinidia chinensis HOM05D003857 ORTHO05D004454 5.9e-08 61.2 76 50.0
TPR.G8580 Trifolium pratense HOM05D003857 ORTHO05D004454 5.9e-08 61.2 105 40.0
arahy.Tifrunner.gnm1.ann1.QWC3QU Arachis hypogaea HOM05D003857 ORTHO05D004454 5.0e-07 58.2 92 41.3
arahy.Tifrunner.gnm1.ann1.Y3WDI1 Arachis hypogaea HOM05D003857 ORTHO05D004454 5.0e-07 58.2 92 41.3
BcaC09g50339 Brassica carinata HOM05D003857 ORTHO05D004454 5.0e-07 58.2 58 53.4
LjContig00081g0000031 Lotus japonicus HOM05D003857 ORTHO05D004454 6.5e-07 57.8 95 38.9
Glyma.02G299800 Glycine max HOM05D003857 ORTHO05D004454 8.5e-07 57.4 94 41.5
Atru.chr1.2303 Acer truncatum HOM05D003857 ORTHO05D004454 1.9e-06 56.2 46 56.5
TWI38G0111 Tripterygium wilfordii HOM05D003857 ORTHO05D004454 3.2e-06 55.5 76 38.2
COL.COLO4_31924 Corchorus olitorius HOM05D003857 ORTHO05D004454 4.2e-06 55.1 83 38.6


User provided reference genes

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