Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g065180.3 Solanum lycopersicum HOM05D005997 ORTHO05D008323 1.9e-178 629.0 303 100.0
Sopen07g033400 Solanum pennellii HOM05D005997 ORTHO05D008323 1.9e-175 619.0 303 98.7
PGSC0003DMG400022292 Solanum tuberosum HOM05D005997 ORTHO05D008323 3.5e-169 598.2 308 93.8
Nitab4.5_0010102g0010 Nicotiana tabacum HOM05D005997 ORTHO05D008323 1.1e-146 523.5 293 85.3
CAN.G337.36 Capsicum annuum HOM05D005997 ORTHO05D008323 3.2e-146 521.9 298 85.2
Nitab4.5_0001160g0200 Nicotiana tabacum HOM05D005997 ORTHO05D008323 3.2e-146 521.9 296 85.5
Ciclev10009024m.g Citrus clementina HOM05D005997 ORTHO05D008323 1.4e-117 426.8 303 67.3
Actinidia00103 Actinidia chinensis HOM05D005997 ORTHO05D008323 2.6e-116 422.5 288 71.5
Hma1.2p1_0036F.1_g022850 Hydrangea macrophylla HOM05D005997 ORTHO05D008323 1.9e-114 416.4 292 70.5
TAR624G0829 Trochodendron aralioides HOM05D005997 ORTHO05D008323 4.2e-114 415.2 272 73.2
Cc05_g14560 Coffea canephora HOM05D005997 ORTHO05D008323 7.2e-114 414.5 290 71.0
Gohir.D01G072400 Gossypium hirsutum HOM05D005997 ORTHO05D008323 2.3e-112 409.5 290 70.3
Lj6g0009736 Lotus japonicus HOM05D005997 ORTHO05D008323 4.0e-112 408.7 302 66.2
Peaxi162Scf00047g00845 Petunia axillaris HOM05D005997 ORTHO05D008323 4.0e-112 408.7 296 73.6
Gorai.002G095400 Gossypium raimondii HOM05D005997 ORTHO05D008323 1.5e-111 406.8 290 69.7
COL.COLO4_09766 Corchorus olitorius HOM05D005997 ORTHO05D008323 3.3e-111 405.6 288 68.8
Gohir.A01G086200 Gossypium hirsutum HOM05D005997 ORTHO05D008323 5.7e-111 404.8 290 69.7
Eucgr.F03518 Eucalyptus grandis HOM05D005997 ORTHO05D008323 1.7e-110 403.3 236 80.1
Thecc.07G024000 Theobroma cacao HOM05D005997 ORTHO05D008323 2.2e-110 402.9 289 69.6
Duzib213G0008 Durio zibethinus HOM05D005997 ORTHO05D008323 3.7e-110 402.1 289 69.2
FAN21G1688 Fragaria x ananassa HOM05D005997 ORTHO05D008323 6.3e-110 401.4 286 67.1
Phvul.006G051400 Phaseolus vulgaris HOM05D005997 ORTHO05D008323 1.8e-109 399.8 294 68.0
TWI38G0893 Tripterygium wilfordii HOM05D005997 ORTHO05D008323 1.8e-109 399.8 273 68.9
Dinv40826 Davidia involucrata HOM05D005997 ORTHO05D008323 4.1e-109 398.7 254 76.4
Migut.M01687 Erythranthe guttata HOM05D005997 ORTHO05D008323 7.0e-109 397.9 297 65.0
SalBow8G0955 Salvia bowleyana HOM05D005997 ORTHO05D008323 1.2e-108 397.1 243 76.5
TPR.G1907 Trifolium pratense HOM05D005997 ORTHO05D008323 1.2e-108 397.1 304 66.1
Potri.008G180300 Populus trichocarpa HOM05D005997 ORTHO05D008323 2.0e-108 396.4 239 76.2
RcHm_v2.0_Chr5g0042111 Rosa chinensis HOM05D005997 ORTHO05D008323 2.0e-108 396.4 275 67.6
RcHm_v2.0_Chr5g0042181 Rosa chinensis HOM05D005997 ORTHO05D008323 2.0e-108 396.4 275 68.0
Sabra08G0137600 Salix brachista HOM05D005997 ORTHO05D008323 2.0e-108 396.4 258 71.7
SGA_v2.0_scaffold168G38522 Striga asiatica HOM05D005997 ORTHO05D008323 2.0e-108 396.4 241 78.0
CANSAT11G0206 Cannabis sativa HOM05D005997 ORTHO05D008323 1.3e-107 393.7 289 68.2
Manes.03G134100 Manihot esculenta HOM05D005997 ORTHO05D008323 1.7e-107 393.3 264 70.8
Medtr3g055920 Medicago truncatula HOM05D005997 ORTHO05D008323 2.2e-107 392.9 292 65.1
arahy.Tifrunner.gnm1.ann1.JACZ02 Arachis hypogaea HOM05D005997 ORTHO05D008323 5.0e-107 391.7 263 71.1
VMungo0540G2314 Vigna mungo HOM05D005997 ORTHO05D008323 8.5e-107 391.0 245 75.5
GSVIVG01037764001 Vitis vinifera HOM05D005997 ORTHO05D008323 1.5e-106 390.2 276 68.8
Prupe.4G230500 Prunus persica HOM05D005997 ORTHO05D008323 4.2e-106 388.7 287 66.2
arahy.Tifrunner.gnm1.ann1.N1CS9Q Arachis hypogaea HOM05D005997 ORTHO05D008323 5.5e-106 388.3 262 71.0
Glyma.08G325100 Glycine max HOM05D005997 ORTHO05D008323 5.5e-106 388.3 293 64.8
Rhsim06G0225700 Rhododendron simsii HOM05D005997 ORTHO05D008323 2.1e-105 386.3 288 69.8
FAN25G0611 Fragaria x ananassa HOM05D005997 ORTHO05D008323 6.1e-105 384.8 311 61.7
PSO210G1255 Papaver somniferum HOM05D005997 ORTHO05D008323 6.1e-105 384.8 244 73.4
MD11G1206400 Malus domestica HOM05D005997 ORTHO05D008323 1.0e-104 384.0 293 66.2
Psat5g172000 Pisum sativum HOM05D005997 ORTHO05D008323 2.3e-104 382.9 300 62.3
Oeu019619.1 Olea europaea HOM05D005997 ORTHO05D008323 3.0e-104 382.5 322 60.6
Sc07g0002940 Simmondsia chinensis HOM05D005997 ORTHO05D008323 3.0e-104 382.5 231 74.9
MSTRG.6975 Avicennia marina HOM05D005997 ORTHO05D008323 5.2e-104 381.7 259 70.7
Ca_20145_v3 Cicer arietinum L. HOM05D005997 ORTHO05D008323 6.8e-104 381.3 248 73.0
Aqoxy1G04030 Aquilegia oxysepala HOM05D005997 ORTHO05D008323 8.8e-104 380.9 270 68.9
Ca_20142_v3 Cicer arietinum L. HOM05D005997 ORTHO05D008323 5.7e-103 378.3 248 73.0
Lalb_Chr06g0174051 Lupinus albus HOM05D005997 ORTHO05D008323 9.8e-103 377.5 251 69.3
Nn1g03269 Nelumbo nucifera HOM05D005997 ORTHO05D008323 4.8e-102 375.2 229 74.7
FvH4_3g23860 Fragaria vesca HOM05D005997 ORTHO05D008323 3.1e-101 372.5 218 78.4
CiPaw.12G135200 Carya illinoinensis HOM05D005997 ORTHO05D008323 1.2e-100 370.5 215 80.5
CsaV3_7G018710 Cucumis sativus L. HOM05D005997 ORTHO05D008323 3.5e-100 369.0 230 73.0
Carub.0001s3961 Capsella rubella HOM05D005997 ORTHO05D008323 2.3e-99 366.3 255 67.8
Lj1C884G3 Lonicera japonica HOM05D005997 ORTHO05D008323 5.0e-99 365.2 263 71.1
Sed0012266 Sechium edule HOM05D005997 ORTHO05D008323 5.5e-98 361.7 250 68.0
THA.LOC104826490 Tarenaya hassleriana HOM05D005997 ORTHO05D008323 5.5e-98 361.7 232 72.0
MBI16_g42314_MAGBIO Magnolia biondii HOM05D005997 ORTHO05D008323 7.2e-98 361.3 244 71.3
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 2.1e-97 359.8 221 76.9
AT1G50575 Arabidopsis thaliana HOM05D005997 ORTHO05D008323 2.8e-97 359.4 239 70.7
ClCG09G021010 Citrullus lanatus HOM05D005997 ORTHO05D008323 3.6e-97 359.0 309 58.3
Os03g0587100 Oryza sativa ssp. japonica HOM05D005997 ORTHO05D008323 3.6e-97 359.0 218 75.2
PGR044G2356 Punica granatum HOM05D005997 ORTHO05D008323 3.6e-97 359.0 215 77.7
DCAR_022603 Daucus carota HOM05D005997 ORTHO05D008323 6.1e-97 358.2 229 72.5
Thhalv10011693m.g Eutrema salsugineum HOM05D005997 ORTHO05D008323 1.8e-96 356.7 242 69.0
Zm00001eb049320 Zea mays HOM05D005997 ORTHO05D008323 1.5e-95 353.6 221 71.9
BraA06t23516Z Brassica rapa HOM05D005997 ORTHO05D008323 2.0e-95 353.2 255 67.1
Sp1g37390 Schrenkiella parvula HOM05D005997 ORTHO05D008323 2.0e-95 353.2 243 69.5
Aa31LG10G3760 Aethionema arabicum HOM05D005997 ORTHO05D008323 2.6e-95 352.8 232 70.7
EL10Ac4g07628 Beta vulgaris HOM05D005997 ORTHO05D008323 7.5e-95 351.3 263 65.0
AL1G58220 Arabidopsis lyrata HOM05D005997 ORTHO05D008323 2.2e-94 349.7 243 68.3
A06p03040 Brassica napus HOM05D005997 ORTHO05D008323 6.3e-94 348.2 243 68.3
ATR0712G169 Amborella trichopoda HOM05D005997 ORTHO05D008323 1.2e-92 344.0 217 71.4
BcaC08g43226 Brassica carinata HOM05D005997 ORTHO05D008323 2.7e-92 342.8 246 65.9
C06p05740 Brassica napus HOM05D005997 ORTHO05D008323 2.7e-92 342.8 246 65.9
BolC6t35684H Brassica oleracea HOM05D005997 ORTHO05D008323 2.7e-92 342.8 246 65.9
BcaB07g33491 Brassica carinata HOM05D005997 ORTHO05D008323 1.3e-91 340.5 255 63.5
CARHR040570 Cardamine hirsuta HOM05D005997 ORTHO05D008323 2.3e-91 339.7 243 66.3
Lsat_1_v5_gn_7_114661 Lactuca sativa HOM05D005997 ORTHO05D008323 3.3e-90 335.9 226 72.1
SEGI_04256 Sequoiadendron giganteum HOM05D005997 ORTHO05D008323 7.3e-90 334.7 237 63.3
unitig_899.g15278 Utricularia gibba HOM05D005997 ORTHO05D008323 4.0e-88 328.9 203 73.9
SMO196G0283 Selaginella moellendorffii HOM05D005997 ORTHO05D008323 6.8e-88 328.2 217 67.7
Haze_09774 Corylus avellana HOM05D005997 ORTHO05D008323 2.2e-86 323.2 233 70.4
QL08p008622 Quercus lobata HOM05D005997 ORTHO05D008323 6.4e-86 321.6 306 57.5
AagrBONN_evm.TU.Sc2ySwM_362.871 Anthoceros agrestis HOM05D005997 ORTHO05D008323 1.0e-83 314.3 225 64.0
vmacro11568 Vaccinium macrocarpon HOM05D005997 ORTHO05D008323 1.9e-82 310.1 262 60.7
Atru.BG.132.p Acer truncatum HOM05D005997 ORTHO05D008323 1.2e-81 307.4 173 83.8
PGR031G3624 Punica granatum HOM05D005997 ORTHO05D008323 1.8e-80 303.5 186 75.3
AUR62040674 Chenopodium quinoa HOM05D005997 ORTHO05D008323 3.1e-80 302.8 209 69.4
Psat5g171680 Pisum sativum HOM05D005997 ORTHO05D008323 6.8e-80 301.6 187 75.4
PSO302G0218 Papaver somniferum HOM05D005997 ORTHO05D008323 2.0e-79 300.1 287 56.4
MELO3C024895.2 Cucumis melo HOM05D005997 ORTHO05D008323 2.6e-79 299.7 185 75.1
Cpa.g.sc12.206 Carica papaya HOM05D005997 ORTHO05D008323 9.8e-79 297.7 231 64.5
AUR62015935 Chenopodium quinoa HOM05D005997 ORTHO05D008323 3.7e-78 295.8 206 68.9
CDE07G1873 Ceratophyllum demersum HOM05D005997 ORTHO05D008323 2.4e-77 293.1 200 70.0
Pp3c14_23810 Physcomitrium patens HOM05D005997 ORTHO05D008323 1.2e-76 290.8 219 60.7
Glyma.18G084600 Glycine max HOM05D005997 ORTHO05D008323 1.1e-64 251.1 164 74.4
Dinv10299 Davidia involucrata HOM05D005997 ORTHO05D008323 4.6e-60 235.7 176 66.5
MCO09G728 Micromonas commoda HOM05D004293 ORTHO05D005044 5.4e-53 212.2 221 45.7
arahy.Tifrunner.gnm1.ann1.D6FGWZ Arachis hypogaea HOM05D005997 ORTHO05D008323 4.6e-52 209.1 150 67.3
PRCOL_00002636 Prasinoderma coloniale HOM05D005997 ORTHO05D008323 7.8e-52 208.4 224 50.0
MCO11G065 Micromonas commoda HOM05D004293 ORTHO05D005044 5.1e-51 205.7 219 45.2
CSS0016170 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 7.3e-50 201.8 129 74.4
Cre01.g039850 Chlamydomonas reinhardtii HOM05D005997 ORTHO05D005044 7.3e-50 201.8 225 44.4
CSS0025804 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 1.6e-49 200.7 176 59.1
CSS0047434 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 2.1e-49 200.3 129 73.6
HPP92_007350 Vanilla planifolia HOM05D005997 ORTHO05D008323 8.1e-49 198.4 217 48.8
PRCOL_00000116 Prasinoderma coloniale HOM05D005997 ORTHO05D008323 3.5e-44 183.0 220 42.7
Cfa020073 Carpinus fangiana HOM05D005997 ORTHO05D008323 1.8e-40 170.6 103 78.6
Atru.chr7.2230 Acer truncatum HOM05D005997 ORTHO05D008323 2.4e-37 160.2 97 78.4
Atru.chr7.2351 Acer truncatum HOM05D005997 ORTHO05D008323 2.4e-37 160.2 97 78.4
Aqoxy1G04027 Aquilegia oxysepala HOM05D005997 ORTHO05D008323 7.1e-37 158.7 106 68.9
Prupe.4G230300 Prunus persica HOM05D005997 ORTHO05D008323 9.3e-29 131.7 106 63.2
QL08p004262 Quercus lobata HOM05D005997 ORTHO05D008323 2.3e-27 127.1 155 47.7
QL08p058329 Quercus lobata HOM05D005997 ORTHO05D008323 2.3e-27 127.1 155 47.7
CSS0048391 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 8.2e-25 118.6 79 69.6
QL05p025044 Quercus lobata HOM05D005997 ORTHO05D008323 5.3e-24 115.9 176 42.0
SEGI_34153 Sequoiadendron giganteum HOM05D005997 ORTHO05D008323 5.5e-21 105.9 94 54.3
CSS0044071 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 1.4e-19 101.3 74 68.9
CSS0025137 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 1.1e-16 91.7 50 86.0
QL08p004281 Quercus lobata HOM05D005997 ORTHO05D007626 4.1e-16 89.7 123 46.3
Rhsim03G0100400 Rhododendron simsii HOM05D005997 ORTHO05D338268 1.3e-14 84.7 92 51.1
QL08p004325 Quercus lobata HOM05D005997 ORTHO05D337094 3.2e-13 80.1 115 44.3
QL11p054366 Quercus lobata HOM05D005997 ORTHO05D338109 7.2e-13 79.0 105 46.7
QL08p058354 Quercus lobata HOM05D005997 ORTHO05D007626 9.4e-13 78.6 122 40.2
Lsat_1_v5_gn_8_39280 Lactuca sativa HOM05D005997 ORTHO05D230963 5.7e-10 69.3 48 64.6
arahy.Tifrunner.gnm1.ann1.U3B0HF Arachis hypogaea HOM05D003842 ORTHO05D026908 3.1e-08 63.5 38 81.6


User provided reference genes

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