Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g065140.4 Solanum lycopersicum HOM05D004336 ORTHO05D005367 0.0e+00 1132.1 547 100.0
Sopen07g033360 Solanum pennellii HOM05D004336 ORTHO05D005367 4.5e-311 1070.5 525 98.5
PGSC0003DMG400022194 Solanum tuberosum HOM05D004336 ORTHO05D005367 1.3e-302 1042.3 525 95.6
Nitab4.5_0010102g0040 Nicotiana tabacum HOM05D004336 ORTHO05D005367 1.9e-269 932.2 527 85.4
CAN.G337.39 Capsicum annuum HOM05D004336 ORTHO05D005367 1.9e-266 922.2 530 85.5
Nitab4.5_0001160g0150 Nicotiana tabacum HOM05D004336 ORTHO05D005367 4.7e-265 917.5 527 83.3
Peaxi162Scf00285g00932 Petunia axillaris HOM05D004336 ORTHO05D005367 8.9e-264 913.3 526 83.3
Dinv40824 Davidia involucrata HOM05D004336 ORTHO05D005367 2.9e-238 828.6 526 74.9
Actinidia05042 Actinidia chinensis HOM05D004336 ORTHO05D005367 3.2e-229 798.5 525 73.0
Oeu057077.1 Olea europaea HOM05D004336 ORTHO05D005367 7.1e-229 797.3 553 70.5
Oeu057079.1 Olea europaea HOM05D004336 ORTHO05D005367 7.1e-229 797.3 553 70.5
CSS0014417 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.1e-221 773.5 526 70.7
CSS0041250 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.1e-221 773.5 526 70.7
CSS0044060 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.1e-221 773.5 526 70.7
CSS0047700 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.1e-221 773.5 526 70.7
TAR627G0502 Trochodendron aralioides HOM05D004336 ORTHO05D005367 2.7e-220 768.8 532 69.5
Migut.H01779 Erythranthe guttata HOM05D004336 ORTHO05D005367 2.5e-218 762.3 525 70.1
CSS0031037 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 4.3e-218 761.5 526 71.5
MSTRG.13007 Avicennia marina HOM05D004336 ORTHO05D005367 2.2e-217 759.2 528 69.9
Nn1g03279 Nelumbo nucifera HOM05D004336 ORTHO05D005367 2.8e-217 758.8 539 68.5
Nn1g03281 Nelumbo nucifera HOM05D004336 ORTHO05D005367 2.8e-217 758.8 539 68.5
CSS0013990 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 3.7e-217 758.4 526 70.9
Actinidia00105 Actinidia chinensis HOM05D004336 ORTHO05D005367 1.4e-216 756.5 526 70.3
Lsat_1_v5_gn_7_114040 Lactuca sativa HOM05D004336 ORTHO05D005367 2.5e-213 745.7 530 68.3
SGA_v2.0_scaffold478G52227 Striga asiatica HOM05D004336 ORTHO05D005367 2.3e-211 739.2 527 67.7
HanXRQChr17g0546171 Helianthus annuus HOM05D004336 ORTHO05D005367 5.3e-208 728.0 528 67.6
Aqoxy1G04042 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 2.6e-207 725.7 529 67.1
Thecc.07G024300 Theobroma cacao HOM05D004336 ORTHO05D005367 4.5e-207 724.9 528 68.0
Prupe.4G229800 Prunus persica HOM05D004336 ORTHO05D005367 1.3e-206 723.4 531 67.4
TWI38G0192 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 2.9e-206 722.2 528 65.7
Duzib170G1061 Durio zibethinus HOM05D004336 ORTHO05D005367 5.0e-206 721.5 529 66.2
Gohir.A01G085900 Gossypium hirsutum HOM05D004336 ORTHO05D005367 6.5e-206 721.1 531 68.2
MD03G1190200 Malus domestica HOM05D004336 ORTHO05D005367 1.1e-205 720.3 528 66.3
Manes.15G064500 Manihot esculenta HOM05D004336 ORTHO05D005367 3.2e-205 718.8 543 64.3
Lj1A883T40 Lonicera japonica HOM05D004336 ORTHO05D005367 5.5e-205 718.0 526 65.0
COL.COLO4_09762 Corchorus olitorius HOM05D004336 ORTHO05D005367 1.2e-204 716.8 529 67.5
Gorai.002G095200 Gossypium raimondii HOM05D004336 ORTHO05D005367 7.9e-204 714.1 531 67.4
TWI38G0059 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 2.3e-203 712.6 528 64.6
FvH4_3g23790 Fragaria vesca HOM05D004336 ORTHO05D005367 1.5e-202 709.9 527 65.8
Haze_09771 Corylus avellana HOM05D004336 ORTHO05D005367 2.0e-202 709.5 550 64.9
FAN11G0890 Fragaria x ananassa HOM05D004336 ORTHO05D005367 2.0e-202 709.5 527 65.7
DCAR_016633 Daucus carota HOM05D004336 ORTHO05D005367 2.6e-202 709.1 525 64.8
FAN25G1677 Fragaria x ananassa HOM05D004336 ORTHO05D005367 2.6e-202 709.1 527 65.7
Cfa020245 Carpinus fangiana HOM05D004336 ORTHO05D005367 2.8e-201 705.7 534 66.1
RcHm_v2.0_Chr5g0041971 Rosa chinensis HOM05D004336 ORTHO05D005367 9.1e-200 700.7 532 65.2
Aqoxy4G01189 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 1.2e-199 700.3 525 64.8
FAN21G2219 Fragaria x ananassa HOM05D004336 ORTHO05D005367 5.9e-199 698.0 540 64.3
ClCG09G020990 Citrullus lanatus HOM05D004336 ORTHO05D005367 7.7e-199 697.6 524 66.2
Atru.chr2.3600_Atru.chr2.3601 Acer truncatum HOM05D004336 ORTHO05D005367 6.5e-198 694.5 528 65.0
Cpa.g.sc12.209 Carica papaya HOM05D004336 ORTHO05D005367 6.5e-198 694.5 535 63.6
Potri.001G360600 Populus trichocarpa HOM05D004336 ORTHO05D005367 6.5e-198 694.5 529 66.2
CsaV3_7G018720 Cucumis sativus L. HOM05D004336 ORTHO05D005367 1.9e-197 693.0 524 65.1
PGR083G2301 Punica granatum HOM05D004336 ORTHO05D005367 2.5e-197 692.6 537 62.2
MBI19_g06156_MAGBIO Magnolia biondii HOM05D004336 ORTHO05D005367 3.2e-197 692.2 525 65.0
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 7.2e-197 691.0 508 66.7
CiPaw.11G199400 Carya illinoinensis HOM05D004336 ORTHO05D005367 6.1e-196 688.0 531 63.5
PSO210G4424 Papaver somniferum HOM05D004336 ORTHO05D005367 8.0e-196 687.6 532 64.3
Lj6g0007567 Lotus japonicus HOM05D004336 ORTHO05D005367 1.8e-195 686.4 532 64.7
Lj8A175T74 Lonicera japonica HOM05D004336 ORTHO05D005367 2.3e-195 686.0 505 66.5
PSO302G0308 Papaver somniferum HOM05D004336 ORTHO05D005367 2.3e-195 686.0 531 64.0
Gohir.D01G072200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.1e-192 677.2 532 65.4
arahy.Tifrunner.gnm1.ann1.KR0ZCF Arachis hypogaea HOM05D004336 ORTHO05D005367 2.4e-192 676.0 533 62.5
arahy.Tifrunner.gnm1.ann1.K6BPDT Arachis hypogaea HOM05D004336 ORTHO05D005367 9.1e-192 674.1 550 60.2
Sed0027079 Sechium edule HOM05D004336 ORTHO05D005367 2.7e-191 672.5 525 63.8
Medtr3g055690 Medicago truncatula HOM05D004336 ORTHO05D005367 3.5e-191 672.2 524 61.8
unitig_8.g4786 Utricularia gibba HOM05D004336 ORTHO05D005367 3.5e-191 672.2 534 62.7
Eucgr.F03516 Eucalyptus grandis HOM05D004336 ORTHO05D005367 7.7e-191 671.0 519 64.0
Glyma.18G085100 Glycine max HOM05D004336 ORTHO05D005367 1.0e-190 670.6 526 63.3
Ca_14783_v3 Cicer arietinum L. HOM05D004336 ORTHO05D005367 6.5e-190 667.9 532 62.4
Eucgr.F00628 Eucalyptus grandis HOM05D004336 ORTHO05D005367 7.2e-189 664.5 545 60.4
Gohir.A04G010200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.2e-188 663.7 534 62.4
Sed0018719 Sechium edule HOM05D004336 ORTHO05D005367 1.6e-188 663.3 531 62.5
Gorai.009G445600 Gossypium raimondii HOM05D004336 ORTHO05D005367 3.6e-188 662.1 534 62.7
Psat5g171920 Pisum sativum HOM05D004336 ORTHO05D005367 4.7e-188 661.8 538 62.3
Gohir.D05G377800 Gossypium hirsutum HOM05D004336 ORTHO05D005367 6.1e-188 661.4 534 62.4
CARHR268810 Cardamine hirsuta HOM05D004336 ORTHO05D005367 6.8e-187 657.9 566 59.7
AT5G55500 Arabidopsis thaliana HOM05D004336 ORTHO05D005367 8.8e-187 657.5 561 59.7
Phvul.006G051000 Phaseolus vulgaris HOM05D004336 ORTHO05D005367 2.6e-186 656.0 524 61.6
AL8G31030 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 4.4e-186 655.2 565 58.9
Glyma.18G085200 Glycine max HOM05D004336 ORTHO05D005367 7.5e-186 654.4 532 59.8
Lalb_Chr18g0050361 Lupinus albus HOM05D004336 ORTHO05D005367 9.8e-186 654.1 537 60.1
Glyma.08G324900 Glycine max HOM05D004336 ORTHO05D005367 1.3e-185 653.7 533 61.5
Aa31LG3G11440 Aethionema arabicum HOM05D004336 ORTHO05D005367 2.2e-185 652.9 549 59.9
A03p14020 Brassica napus HOM05D004336 ORTHO05D005367 2.2e-185 652.9 547 58.7
Sp6g17380 Schrenkiella parvula HOM05D004336 ORTHO05D005367 2.8e-185 652.5 557 58.5
C03p16460 Brassica napus HOM05D004336 ORTHO05D005367 3.7e-185 652.1 546 58.6
BraA03t10701Z Brassica rapa HOM05D004336 ORTHO05D005367 3.7e-185 652.1 547 58.9
Glyma.08G324800 Glycine max HOM05D004336 ORTHO05D005367 3.7e-185 652.1 528 59.5
Thhalv10013238m.g Eutrema salsugineum HOM05D004336 ORTHO05D005367 3.5e-183 645.6 555 58.6
Carub.0008s1585 Capsella rubella HOM05D004336 ORTHO05D005367 5.9e-183 644.8 565 58.8
BolC3t14066H Brassica oleracea HOM05D004336 ORTHO05D005367 7.7e-183 644.4 549 57.9
MELO3C024890.2 Cucumis melo HOM05D004336 ORTHO05D005367 1.7e-182 643.3 524 62.0
VMungo0540G2288 Vigna mungo HOM05D004336 ORTHO05D005367 2.3e-179 632.9 491 63.1
Ciclev10008121m.g Citrus clementina HOM05D004336 ORTHO05D005367 2.2e-177 626.3 535 58.3
THA.LOC104811644 Tarenaya hassleriana HOM05D004336 ORTHO05D005367 2.8e-177 625.9 543 57.8
Duzib213G0745 Durio zibethinus HOM05D004336 ORTHO05D005367 6.3e-177 624.8 529 61.1
EL10Ac4g07633 Beta vulgaris HOM05D004336 ORTHO05D005367 1.4e-176 623.6 529 58.0
ATR0712G174 Amborella trichopoda HOM05D004336 ORTHO05D005367 5.4e-176 621.7 482 61.6
BcaC01g06371 Brassica carinata HOM05D004336 ORTHO05D005367 5.9e-175 618.2 542 57.2
HPP92_018937 Vanilla planifolia HOM05D004336 ORTHO05D005367 1.1e-173 614.0 522 57.3
HPP92_018936 Vanilla planifolia HOM05D004336 ORTHO05D005367 3.3e-173 612.5 476 59.9
Hund01925 Selenicereus undatus HOM05D004336 ORTHO05D005367 1.2e-172 610.5 557 55.5
Hund23166 Selenicereus undatus HOM05D004336 ORTHO05D005367 1.8e-171 606.7 526 57.2
Sc03g0008140 Simmondsia chinensis HOM05D004336 ORTHO05D005367 7.5e-170 601.3 404 68.6
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 2.2e-169 599.7 524 58.8
Os08g0503800 Oryza sativa ssp. japonica HOM05D004336 ORTHO05D005367 7.0e-168 594.7 526 56.7
Ah.04g166390 Amaranthus hybridus HOM05D004336 ORTHO05D005367 2.7e-167 592.8 477 59.7
Rhsim06G0225600 Rhododendron simsii HOM05D004336 ORTHO05D005367 3.1e-163 579.3 446 65.0
SHI26554 Sapria himalayana HOM05D004336 ORTHO05D005367 4.1e-160 568.9 455 60.0
TPR.G23588 Trifolium pratense HOM05D004336 ORTHO05D005367 5.4e-160 568.5 393 67.7
AUR62040678 Chenopodium quinoa HOM05D004336 ORTHO05D005367 6.0e-151 538.5 383 66.1
EL10Ac4g07632 Beta vulgaris HOM05D004336 ORTHO05D005367 9.5e-149 531.2 479 54.9
GSVIVG01037759001 Vitis vinifera HOM05D004336 ORTHO05D005367 1.6e-148 530.4 311 78.1
A10p12600 Brassica napus HOM05D004336 ORTHO05D005367 2.6e-146 523.1 424 60.8
Cc05_g14530 Coffea canephora HOM05D004336 ORTHO05D005367 2.9e-145 519.6 311 76.5
RcHm_v2.0_Chr5g0041921 Rosa chinensis HOM05D004336 ORTHO05D005367 2.0e-138 496.9 303 75.6
QL08p008529 Quercus lobata HOM05D004336 ORTHO05D005367 2.6e-138 496.5 291 78.0
CDE07G1634 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 7.6e-138 495.0 311 73.0
Mapoly0007s0065 Marchantia polymorpha HOM05D004336 ORTHO05D005367 2.2e-129 466.8 538 43.7
AUR62015931 Chenopodium quinoa HOM05D004336 ORTHO05D005367 7.6e-122 441.8 382 57.3
Ah.06g181060 Amaranthus hybridus HOM05D004336 ORTHO05D005367 6.7e-118 428.7 288 66.3
Pp3c14_26580 Physcomitrium patens HOM05D004336 ORTHO05D005367 7.4e-117 425.2 532 40.4
Oeu019622.1 Olea europaea HOM05D004336 ORTHO05D005367 3.7e-116 422.9 241 82.6
SMO347G0076 Selaginella moellendorffii HOM05D004336 ORTHO05D005367 5.1e-110 402.5 529 40.5
QL04p097747 Quercus lobata HOM05D004336 ORTHO05D005367 4.1e-107 392.9 238 77.7
Sabra16G0237900 Salix brachista HOM05D004336 ORTHO05D005367 4.1e-107 392.9 246 75.6
BcaB08g35906 Brassica carinata HOM05D004336 ORTHO05D005367 1.7e-92 344.4 397 50.1
RcHm_v2.0_Chr5g0080011 Rosa chinensis HOM05D004336 ORTHO05D005367 2.3e-86 323.9 198 76.8
BraA10t43362Z Brassica rapa HOM05D004336 ORTHO05D005367 1.5e-85 321.2 339 50.7
FvH4_3g12320 Fragaria vesca HOM05D004336 ORTHO05D005367 1.1e-83 315.1 201 72.1
Zm00001eb034690 Zea mays HOM05D004336 ORTHO05D005367 2.0e-82 310.8 348 46.8
MD11G1206800 Malus domestica HOM05D004336 ORTHO05D005367 4.4e-77 293.1 250 58.0
BcaB01g04318 Brassica carinata HOM05D004336 ORTHO05D005367 8.0e-71 272.3 270 53.0
MD11G1206700 Malus domestica HOM05D004336 ORTHO05D005367 7.5e-69 265.8 166 74.7
C09p46150 Brassica napus HOM05D004336 ORTHO05D005367 4.7e-55 219.9 220 51.8
BolC9t57481H Brassica oleracea HOM05D004336 ORTHO05D005367 4.7e-55 219.9 220 52.7
C09p46160 Brassica napus HOM05D004336 ORTHO05D005367 1.1e-51 208.8 157 66.2
CBR_g22021 Chara braunii HOM05D000019 ORTHO05D000048 3.0e-49 200.7 418 29.4
A04p06990 Brassica napus HOM05D004336 ORTHO05D005367 1.1e-48 198.7 140 62.9
BraA04t16398Z Brassica rapa HOM05D004336 ORTHO05D005367 1.1e-48 198.7 140 62.9
QL08p008521 Quercus lobata HOM05D004336 ORTHO05D005367 1.1e-48 198.7 240 45.4
A03p66870 Brassica napus HOM05D004336 ORTHO05D005367 2.5e-48 197.6 124 68.5
AagrBONN_evm.TU.Sc2ySwM_228.1049 Anthoceros agrestis HOM05D004336 ORTHO05D005367 5.8e-45 186.4 189 47.6
MSTRG.14468 Avicennia marina HOM05D004336 ORTHO05D005367 9.8e-45 185.7 162 54.3
Eucgr.I00174 Eucalyptus grandis HOM05D004336 ORTHO05D005367 1.7e-44 184.9 109 78.0
SHI22211 Sapria himalayana HOM05D004336 ORTHO05D005367 4.0e-38 163.7 276 38.4
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 2.6e-37 161.0 108 63.9
SHI26544 Sapria himalayana HOM05D004336 ORTHO05D005367 4.9e-36 156.8 165 49.7
SHI40288 Sapria himalayana HOM05D004336 ORTHO05D005367 8.3e-36 156.0 284 37.0
Ah.06g181050 Amaranthus hybridus HOM05D004336 ORTHO05D005367 1.1e-35 155.6 185 45.9
SEGI_14116 Sequoiadendron giganteum HOM05D004336 ORTHO05D005367 7.1e-35 152.9 298 33.9
SHI48138 Sapria himalayana HOM05D004336 ORTHO05D005367 1.2e-34 152.1 281 38.1
CDE07G0680 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 2.1e-31 141.4 204 42.6
TAR627G0477 Trochodendron aralioides HOM05D000054 ORTHO05D000171 2.1e-31 141.4 95 69.5
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 3.8e-28 130.6 78 71.8
BolC9t57326H Brassica oleracea HOM05D004336 ORTHO05D005367 3.8e-28 130.6 78 71.8
AL8G29720 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 2.1e-26 124.8 95 63.2
BcaB05g23098 Brassica carinata HOM05D004336 ORTHO05D005367 3.9e-25 120.6 85 63.5
RcHm_v2.0_Chr5g0079391 Rosa chinensis HOM05D004336 ORTHO05D005367 1.8e-22 111.7 110 52.7
BcaB01g04317 Brassica carinata HOM05D004336 ORTHO05D005367 5.4e-19 100.1 72 69.4
HanXRQChr04g0109771 Helianthus annuus HOM05D004336 ORTHO05D005367 7.8e-18 96.3 88 53.4
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 1.6e-15 88.6 59 66.1
AagrBONN_evm.TU.Sc2ySwM_228.1050 Anthoceros agrestis HOM05D004336 ORTHO05D005367 1.6e-10 72.0 167 29.3
TAR612G0001 Trochodendron aralioides HOM05D000054 ORTHO05D000171 9.6e-08 62.8 34 88.2


User provided reference genes

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