Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g064950.3 Solanum lycopersicum HOM05D006019 ORTHO05D007900 1.2e-289 999.2 528 100.0
Sopen07g033150 Solanum pennellii HOM05D006019 ORTHO05D007900 2.3e-285 984.9 530 98.7
PGSC0003DMG400022300 Solanum tuberosum HOM05D006019 ORTHO05D007900 6.8e-277 956.8 547 94.0
CAN.G337.58 Capsicum annuum HOM05D006019 ORTHO05D007900 2.4e-253 878.6 542 85.8
Peaxi162Scf00235g00727 Petunia axillaris HOM05D006019 ORTHO05D007900 9.3e-242 840.1 534 82.0
Nitab4.5_0000984g0040 Nicotiana tabacum HOM05D006019 ORTHO05D007900 3.3e-239 831.6 544 82.4
Nitab4.5_0002826g0040 Nicotiana tabacum HOM05D006019 ORTHO05D007900 5.8e-228 794.3 488 85.0
CSS0042888 Camellia sinensis var. sinensis HOM05D006019 ORTHO05D007900 4.6e-209 731.5 530 70.0
CSS0000535 Camellia sinensis var. sinensis HOM05D006019 ORTHO05D007900 2.3e-208 729.2 530 69.4
GSVIVG01037722001 Vitis vinifera HOM05D006019 ORTHO05D007900 1.0e-203 713.8 464 74.6
Eucgr.F03504 Eucalyptus grandis HOM05D006019 ORTHO05D007900 3.8e-203 711.8 515 68.9
TAR629G1914 Trochodendron aralioides HOM05D006019 ORTHO05D007900 5.5e-202 708.0 511 69.7
Atru.chr2.3529 Acer truncatum HOM05D006019 ORTHO05D007900 7.9e-201 704.1 460 75.2
Manes.03G136600 Manihot esculenta HOM05D006019 ORTHO05D007900 2.3e-200 702.6 517 69.1
Potri.015G065900 Populus trichocarpa HOM05D006019 ORTHO05D007900 3.9e-200 701.8 459 75.2
Cc05_g14300 Coffea canephora HOM05D006019 ORTHO05D007900 1.1e-199 700.3 493 70.6
QL08p020269 Quercus lobata HOM05D006019 ORTHO05D007900 3.3e-199 698.7 527 67.9
Atru.chr2.3549 Acer truncatum HOM05D006019 ORTHO05D007900 1.3e-198 696.8 460 74.3
Nn1g07344 Nelumbo nucifera HOM05D006019 ORTHO05D007900 1.3e-198 696.8 493 70.4
Actinidia35369 Actinidia chinensis HOM05D006019 ORTHO05D007900 1.7e-198 696.4 469 74.0
THA.LOC104817684 Tarenaya hassleriana HOM05D006019 ORTHO05D007900 2.8e-198 695.7 460 75.2
VMungo0647G0128 Vigna mungo HOM05D006019 ORTHO05D007900 2.8e-198 695.7 520 68.7
Sabra15G0091100 Salix brachista HOM05D006019 ORTHO05D007900 4.8e-198 694.9 524 67.2
vmacro09689 Vaccinium macrocarpon HOM05D006019 ORTHO05D007900 4.8e-198 694.9 468 73.5
CiPaw.11G172700 Carya illinoinensis HOM05D006019 ORTHO05D007900 8.2e-198 694.1 460 74.1
Thecc.07G028300 Theobroma cacao HOM05D006019 ORTHO05D007900 5.3e-197 691.4 527 67.4
Oeu026379.1 Olea europaea HOM05D006019 ORTHO05D007900 1.2e-196 690.3 463 73.4
Phvul.008G272400 Phaseolus vulgaris HOM05D006019 ORTHO05D007900 2.6e-196 689.1 528 67.0
Duzib213G0195 Durio zibethinus HOM05D006019 ORTHO05D007900 7.7e-196 687.6 536 65.7
PGR031G3909 Punica granatum HOM05D006019 ORTHO05D007900 1.3e-195 686.8 468 71.4
Glyma.02G294900 Glycine max HOM05D006019 ORTHO05D007900 1.7e-195 686.4 496 70.0
Gorai.002G093600 Gossypium raimondii HOM05D006019 ORTHO05D007900 2.9e-195 685.6 525 66.5
Gohir.A01G084500 Gossypium hirsutum HOM05D006019 ORTHO05D007900 5.0e-195 684.9 525 66.9
Gohir.D01G070900 Gossypium hirsutum HOM05D006019 ORTHO05D007900 6.5e-195 684.5 527 66.2
ECA240G2757 Erigeron canadensis HOM05D006019 ORTHO05D007900 8.5e-195 684.1 495 69.3
Dinv22232 Davidia involucrata HOM05D006019 ORTHO05D007900 1.4e-194 683.3 524 67.0
Haze_09462 Corylus avellana HOM05D006019 ORTHO05D007900 9.4e-194 680.6 458 72.7
LjContig00272g0018197 Lotus japonicus HOM05D006019 ORTHO05D007900 1.6e-193 679.9 527 66.6
COL.COLO4_09733 Corchorus olitorius HOM05D006019 ORTHO05D007900 3.6e-193 678.7 531 64.6
Glyma.14G018700 Glycine max HOM05D006019 ORTHO05D007900 3.6e-193 678.7 529 67.1
Ciclev10007944m.g Citrus clementina HOM05D006019 ORTHO05D007900 2.3e-192 676.0 529 66.4
HanXRQChr13g0408251 Helianthus annuus HOM05D006019 ORTHO05D007900 3.0e-192 675.6 527 63.8
ClCG10G005120 Citrullus lanatus HOM05D006019 ORTHO05D007900 1.5e-191 673.3 479 69.7
Migut.M01708 Erythranthe guttata HOM05D006019 ORTHO05D007900 1.5e-191 673.3 500 68.8
FAN21G2609 Fragaria x ananassa HOM05D006019 ORTHO05D007900 1.5e-191 673.3 519 65.7
Prupe.4G223000 Prunus persica HOM05D006019 ORTHO05D007900 1.5e-191 673.3 516 67.4
Lsat_1_v5_gn_9_90660 Lactuca sativa HOM05D006019 ORTHO05D007900 2.0e-191 672.9 465 69.5
CANSAT11G1049 Cannabis sativa HOM05D006019 ORTHO05D007900 4.8e-190 668.3 512 66.0
Lalb_Chr04g0248161 Lupinus albus HOM05D006019 ORTHO05D007900 6.3e-190 667.9 533 64.4
Lj1C880T10 Lonicera japonica HOM05D006019 ORTHO05D007900 1.1e-189 667.2 524 67.2
MELO3C014178.2 Cucumis melo HOM05D006019 ORTHO05D007900 5.3e-189 664.8 514 65.4
Cpa.g.sc284.5 Carica papaya HOM05D006019 ORTHO05D007900 2.0e-188 662.9 543 63.0
arahy.Tifrunner.gnm1.ann1.G2L6CM Arachis hypogaea HOM05D006019 ORTHO05D007900 2.6e-188 662.5 459 71.5
DCAR_017106 Daucus carota HOM05D006019 ORTHO05D007900 4.5e-188 661.8 443 72.7
Sed0026759 Sechium edule HOM05D006019 ORTHO05D007900 4.5e-188 661.8 460 71.1
CsaV3_3G004800 Cucumis sativus L. HOM05D006019 ORTHO05D007900 2.2e-187 659.4 457 70.7
RcHm_v2.0_Chr5g0041541 Rosa chinensis HOM05D006019 ORTHO05D007900 5.0e-187 658.3 520 64.2
FAN25G1378 Fragaria x ananassa HOM05D006019 ORTHO05D007900 3.2e-186 655.6 519 64.7
MD11G1209500 Malus domestica HOM05D006019 ORTHO05D007900 4.2e-186 655.2 497 66.0
AUR62020342 Chenopodium quinoa HOM05D006019 ORTHO05D007900 2.7e-185 652.5 494 64.8
AL8G30770 Arabidopsis lyrata HOM05D006019 ORTHO05D007900 6.1e-185 651.4 470 69.6
Thhalv10013195m.g Eutrema salsugineum HOM05D006019 ORTHO05D007900 1.4e-184 650.2 480 67.5
HanXRQChr03g0076861 Helianthus annuus HOM05D006019 ORTHO05D007900 4.0e-184 648.7 468 67.7
AT5G55220 Arabidopsis thaliana HOM05D006019 ORTHO05D007900 1.2e-183 647.1 470 68.9
BcaB05g22192 Brassica carinata HOM05D006019 ORTHO05D007900 1.5e-183 646.7 460 68.9
TWI39G1205 Tripterygium wilfordii HOM05D006019 ORTHO05D007900 9.7e-183 644.0 467 68.7
Sp6g17150 Schrenkiella parvula HOM05D006019 ORTHO05D007900 8.2e-182 641.0 460 68.5
Medtr5g093830 Medicago truncatula HOM05D006019 ORTHO05D007900 1.1e-181 640.6 531 63.3
CARHR268580 Cardamine hirsuta HOM05D006019 ORTHO05D007900 2.4e-181 639.4 460 69.3
TPR.G35353 Trifolium pratense HOM05D006019 ORTHO05D007900 4.1e-181 638.6 528 61.7
Carub.0008s1557 Capsella rubella HOM05D006019 ORTHO05D007900 5.3e-181 638.3 469 68.2
Aa31LG3G11210 Aethionema arabicum HOM05D006019 ORTHO05D007900 7.0e-181 637.9 530 62.1
BolC2t07733H Brassica oleracea HOM05D006019 ORTHO05D007900 9.1e-181 637.5 473 67.4
BraA02t06043Z Brassica rapa HOM05D006019 ORTHO05D007900 7.7e-180 634.4 462 68.4
EL10Ac4g07692 Beta vulgaris HOM05D006019 ORTHO05D007900 1.7e-179 633.3 557 60.0
Ca_06346_v3 Cicer arietinum L. HOM05D006019 ORTHO05D007900 2.9e-179 632.5 440 71.1
FvH4_3g23540 Fragaria vesca HOM05D006019 ORTHO05D007900 1.1e-178 630.6 494 65.0
Psat2g009800 Pisum sativum HOM05D006019 ORTHO05D007900 2.7e-177 625.9 530 60.9
Aqoxy1G02863 Aquilegia oxysepala HOM05D006019 ORTHO05D007900 1.4e-176 623.6 464 66.4
MBI19_g29437_MAGBIO Magnolia biondii HOM05D006019 ORTHO05D007900 1.2e-175 620.5 526 60.5
Rhsim04G0016400 Rhododendron simsii HOM05D006019 ORTHO05D000403 1.2e-175 620.5 535 62.6
arahy.Tifrunner.gnm1.ann1.PR9FWM Arachis hypogaea HOM05D006019 ORTHO05D007900 2.6e-175 619.4 459 67.8
PSO541G6030 Papaver somniferum HOM05D006019 ORTHO05D007900 1.3e-171 607.1 521 59.9
PSO675G6628 Papaver somniferum HOM05D006019 ORTHO05D007900 1.5e-170 603.6 521 59.5
FAN16G2690 Fragaria x ananassa HOM05D006019 ORTHO05D007900 3.3e-170 602.4 519 61.5
Ah.06g182250 Amaranthus hybridus HOM05D006019 ORTHO05D007900 8.0e-169 597.8 490 61.2
AUR62015881 Chenopodium quinoa HOM05D006019 ORTHO05D007900 1.0e-168 597.4 506 59.1
C02p16310 Brassica napus HOM05D006019 ORTHO05D000403 1.8e-168 596.7 436 67.7
A02p09780 Brassica napus HOM05D006019 ORTHO05D000403 8.9e-168 594.3 436 67.7
Hund01957 Selenicereus undatus HOM05D006019 ORTHO05D007900 3.3e-162 575.9 492 60.0
BcaC03g14251 Brassica carinata HOM05D006019 ORTHO05D007900 1.2e-161 573.9 460 63.5
ATR1128G029 Amborella trichopoda HOM05D006019 ORTHO05D007900 4.0e-160 568.9 443 63.0
Os06g0308000 Oryza sativa ssp. japonica HOM05D006019 ORTHO05D007900 2.6e-159 566.2 504 57.5
Zm00001eb405570 Zea mays HOM05D006019 ORTHO05D007900 2.4e-157 559.7 453 59.6
SGA_v2.0_scaffold171G38908 Striga asiatica HOM05D006019 ORTHO05D007900 2.6e-151 539.7 488 59.4
SalBow8G4839 Salvia bowleyana HOM05D006019 ORTHO05D007900 2.3e-144 516.5 520 55.0
unitig_22.g6170 Utricularia gibba HOM05D006019 ORTHO05D007900 2.3e-144 516.5 373 71.3
Sc16g0005740 Simmondsia chinensis HOM05D006019 ORTHO05D007900 9.9e-143 511.1 405 62.2
BcaC03g14252 Brassica carinata HOM05D006019 ORTHO05D007900 2.4e-136 490.0 355 66.2
SEGI_28230 Sequoiadendron giganteum HOM05D006019 ORTHO05D007900 2.4e-133 479.9 503 47.5
Pp3c11_10950 Physcomitrium patens HOM05D006019 ORTHO05D007900 2.2e-126 456.8 454 50.2
CDE04G0522 Ceratophyllum demersum HOM05D006019 ORTHO05D007900 6.4e-126 455.3 377 58.9
FAN11G0939 Fragaria x ananassa HOM05D006019 ORTHO05D007900 3.3e-122 443.0 354 61.9
Mapoly0157s0020 Marchantia polymorpha HOM05D006019 ORTHO05D007900 2.8e-121 439.9 459 48.1
AagrBONN_evm.TU.Sc2ySwM_228.3732 Anthoceros agrestis HOM05D006019 ORTHO05D007900 3.6e-121 439.5 455 49.0
Pp3c2_30270 Physcomitrium patens HOM05D006019 ORTHO05D007900 2.0e-119 433.7 458 46.9
CBR_g21850 Chara braunii HOM05D006019 ORTHO05D007900 9.0e-112 408.3 483 44.7
FAN25G3210 Fragaria x ananassa HOM05D006019 ORTHO05D007900 2.3e-107 393.7 308 63.3
SMO361G0007 Selaginella moellendorffii HOM05D006019 ORTHO05D007900 1.3e-105 387.9 439 43.7
MCO13G367 Micromonas commoda HOM05D006019 ORTHO05D007900 1.3e-73 281.6 453 35.5
PRCOL_00002693 Prasinoderma coloniale HOM05D006019 ORTHO05D007900 9.7e-66 255.4 425 34.1
VMungo0464G1494 Vigna mungo HOM05D006019 ORTHO05D007900 6.1e-52 209.5 134 75.4
A10p12490 Brassica napus HOM05D006019 ORTHO05D007900 2.0e-47 194.5 385 37.9
Oeu026380.1 Olea europaea HOM05D006019 ORTHO05D007900 5.0e-46 189.9 134 66.4
Glyma.14G020800 Glycine max HOM05D006019 ORTHO05D007900 3.3e-45 187.2 137 64.2
TAR720G0004 Trochodendron aralioides HOM05D006019 ORTHO05D007900 4.7e-36 156.8 107 72.9
HPP92_015779 Vanilla planifolia HOM05D006019 ORTHO05D007900 6.2e-36 156.4 244 38.1
Cre01.g001750 Chlamydomonas reinhardtii HOM05D006019 ORTHO05D007900 2.2e-33 147.9 443 27.1
Glyma.14G020666 Glycine max HOM05D006019 ORTHO05D007900 9.9e-26 122.5 92 65.2
VMungo0647G0792 Vigna mungo HOM05D006019 ORTHO05D007900 1.0e-22 112.5 93 62.4
CDE04G2936 Ceratophyllum demersum HOM05D006019 ORTHO05D007900 3.0e-22 110.9 68 82.4
Hma1.2p1_4091F.1_g338270 Hydrangea macrophylla HOM05D006019 ORTHO05D007900 3.9e-22 110.5 114 58.8
C09p45770 Brassica napus HOM05D006019 ORTHO05D007900 4.3e-21 107.1 220 35.9
BolC9t57451H Brassica oleracea HOM05D006019 ORTHO05D007900 7.3e-21 106.3 195 36.9
BraA10t43342Z Brassica rapa HOM05D006019 ORTHO05D007900 1.3e-17 95.5 208 31.7
C09p45760 Brassica napus HOM05D006019 ORTHO05D007900 2.9e-17 94.4 119 52.1
Ca_29171_v3 Cicer arietinum L. HOM05D006019 ORTHO05D003051 9.6e-13 79.3 503 22.7
BcaC04g20257 Brassica carinata HOM05D006019 ORTHO05D007900 2.8e-12 77.8 79 58.2
unitig_22.g6169 Utricularia gibba HOM05D006019 ORTHO05D007900 1.5e-10 72.0 51 60.8


User provided reference genes

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