Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g064710.3 Solanum lycopersicum HOM05D007013 ORTHO05D008999 2.1e-230 802.0 399 100.0
Sopen07g032910 Solanum pennellii HOM05D007013 ORTHO05D008999 2.3e-192 675.6 349 97.1
Nitab4.5_0002287g0070 Nicotiana tabacum HOM05D007013 ORTHO05D008999 9.0e-189 663.7 398 83.4
Nitab4.5_0005590g0010 Nicotiana tabacum HOM05D007013 ORTHO05D008999 9.0e-189 663.7 399 84.2
CAN.G337.80 Capsicum annuum HOM05D007013 ORTHO05D008999 1.5e-188 662.9 398 83.4
Peaxi162Scf00235g00319 Petunia axillaris HOM05D007013 ORTHO05D008999 2.5e-175 619.0 414 76.3
PGSC0003DMG400022313 Solanum tuberosum HOM05D007013 ORTHO05D008999 1.8e-144 516.5 287 88.5
Oeu034036.2 Olea europaea HOM05D007013 ORTHO05D008999 1.6e-140 503.4 395 63.8
Cc05_g13940 Coffea canephora HOM05D007013 ORTHO05D008999 1.5e-138 496.9 399 62.7
vmacro02226 Vaccinium macrocarpon HOM05D007013 ORTHO05D008999 2.7e-137 492.7 399 62.7
Actinidia05088 Actinidia chinensis HOM05D007013 ORTHO05D008999 5.7e-135 485.0 395 62.0
CSS0027260 Camellia sinensis var. sinensis HOM05D007013 ORTHO05D008999 7.5e-135 484.6 395 62.8
Hma1.2p1_0036F.1_g023520 Hydrangea macrophylla HOM05D007013 ORTHO05D008999 1.3e-134 483.8 398 61.3
Migut.H01815 Erythranthe guttata HOM05D007013 ORTHO05D008999 3.6e-129 465.7 396 59.3
TAR624G0955 Trochodendron aralioides HOM05D007013 ORTHO05D008999 1.0e-128 464.2 398 61.1
MSTRG.14440 Avicennia marina HOM05D007013 ORTHO05D008999 3.0e-128 462.6 393 59.5
GSVIVG01037670001 Vitis vinifera HOM05D007013 ORTHO05D008999 1.2e-127 460.7 398 58.3
PSO541G1885 Papaver somniferum HOM05D007013 ORTHO05D008999 3.1e-125 452.6 398 59.0
Ciclev10008561m.g Citrus clementina HOM05D007013 ORTHO05D008999 4.5e-124 448.7 398 58.5
PSO675G8214 Papaver somniferum HOM05D007013 ORTHO05D008999 2.3e-123 446.4 402 58.7
FvH4_3g19730 Fragaria vesca HOM05D007013 ORTHO05D008999 3.8e-123 445.7 390 58.2
Duzib213G0396 Durio zibethinus HOM05D007013 ORTHO05D008999 6.6e-123 444.9 395 58.0
HanXRQChr03g0076401 Helianthus annuus HOM05D007013 ORTHO05D008999 1.5e-122 443.7 391 59.6
Potri.001G418800 Populus trichocarpa HOM05D007013 ORTHO05D008999 2.5e-122 443.0 396 56.8
Sc16g0005930 Simmondsia chinensis HOM05D007013 ORTHO05D008999 3.6e-121 439.1 397 58.2
ECA240G2937 Erigeron canadensis HOM05D007013 ORTHO05D008999 1.8e-120 436.8 391 58.8
Atru.chr2.3453 Acer truncatum HOM05D007013 ORTHO05D008999 3.0e-120 436.0 391 57.3
Lj6g0002864 Lotus japonicus HOM05D007013 ORTHO05D008999 4.0e-120 435.6 396 55.8
Aqoxy1G02096 Aquilegia oxysepala HOM05D007013 ORTHO05D008999 9.8e-119 431.0 397 56.7
Cfa020325 Carpinus fangiana HOM05D007013 ORTHO05D008999 1.3e-118 430.6 403 55.8
TWI38G0247 Tripterygium wilfordii HOM05D007013 ORTHO05D008999 1.3e-118 430.6 396 55.3
CANSAT11G0669 Cannabis sativa HOM05D007013 ORTHO05D008999 2.9e-118 429.5 395 56.5
Hund01977 Selenicereus undatus HOM05D007013 ORTHO05D008999 3.7e-118 429.1 395 54.7
Gohir.D01G068100 Gossypium hirsutum HOM05D007013 ORTHO05D008999 4.9e-118 428.7 396 56.1
Gorai.002G090100 Gossypium raimondii HOM05D007013 ORTHO05D008999 6.4e-118 428.3 396 55.8
Eucgr.F03478 Eucalyptus grandis HOM05D007013 ORTHO05D008999 1.4e-117 427.2 406 54.9
Medtr3g052590 Medicago truncatula HOM05D007013 ORTHO05D008999 2.4e-117 426.4 399 53.6
RcHm_v2.0_Chr5g0033071 Rosa chinensis HOM05D007013 ORTHO05D008999 3.2e-117 426.0 390 56.2
TPR.G33766 Trifolium pratense HOM05D007013 ORTHO05D008999 2.0e-116 423.3 398 53.8
CiPaw.12G131100 Carya illinoinensis HOM05D007013 ORTHO05D008999 3.5e-116 422.5 394 56.1
Thecc.07G033700 Theobroma cacao HOM05D007013 ORTHO05D008999 5.9e-116 421.8 399 55.1
MD11G1215400 Malus domestica HOM05D007013 ORTHO05D008999 7.8e-116 421.4 391 55.2
Lalb_Chr18g0049881 Lupinus albus HOM05D007013 ORTHO05D008999 1.3e-115 420.6 396 54.0
Glyma.08G318300 Glycine max HOM05D007013 ORTHO05D008999 1.1e-114 417.5 396 53.0
VMungo0540G0725 Vigna mungo HOM05D007013 ORTHO05D008999 1.1e-114 417.5 396 53.5
unitig_578.g16279 Utricularia gibba HOM05D001434 ORTHO05D008999 1.5e-114 417.2 389 56.6
EL10Ac4g07781 Beta vulgaris HOM05D007013 ORTHO05D008999 1.9e-114 416.8 395 53.9
DCAR_012723 Daucus carota HOM05D007013 ORTHO05D008999 2.5e-114 416.4 401 53.9
QL08p009594 Quercus lobata HOM05D007013 ORTHO05D008999 2.5e-114 416.4 396 54.5
Psat5g177160 Pisum sativum HOM05D007013 ORTHO05D008999 9.5e-114 414.5 396 53.3
THA.LOC104825406 Tarenaya hassleriana HOM05D007013 ORTHO05D008999 1.4e-112 410.6 390 53.8
FAN16G1225 Fragaria x ananassa HOM05D007013 ORTHO05D008999 1.5e-111 407.1 393 54.7
CsaV3_7G021910 Cucumis sativus L. HOM05D007013 ORTHO05D008999 2.0e-111 406.8 390 53.1
MELO3C013155.2 Cucumis melo HOM05D007013 ORTHO05D008999 3.4e-111 406.0 390 53.1
AL3G34260 Arabidopsis lyrata HOM05D007013 ORTHO05D008999 5.8e-111 405.2 396 54.3
Sabra16G0284300 Salix brachista HOM05D007013 ORTHO05D008999 2.4e-109 399.8 398 53.8
Nn1g07163 Nelumbo nucifera HOM05D007013 ORTHO05D008999 7.0e-109 398.3 370 56.2
Aa31LG8G7290 Aethionema arabicum HOM05D007013 ORTHO05D008999 1.2e-108 397.5 393 53.7
Carub.0003s2044 Capsella rubella HOM05D007013 ORTHO05D008999 3.5e-108 396.0 390 53.3
Lsat_1_v5_gn_9_93121 Lactuca sativa HOM05D007013 ORTHO05D008999 1.0e-107 394.4 391 55.0
arahy.Tifrunner.gnm1.ann1.YL2AFE Arachis hypogaea HOM05D007013 ORTHO05D008999 1.3e-107 394.0 403 49.6
Hma1.2p1_0036F.1_g023530 Hydrangea macrophylla HOM05D007013 ORTHO05D008999 5.6e-106 388.7 322 61.2
BraA02t07867Z Brassica rapa HOM05D007013 ORTHO05D008999 2.1e-105 386.7 393 51.4
Haze_09698 Corylus avellana HOM05D007013 ORTHO05D008999 2.1e-105 386.7 342 57.0
SGA_v2.0_scaffold363G49936 Striga asiatica HOM05D007013 ORTHO05D008999 2.1e-105 386.7 418 49.0
Ca_14746_v3 Cicer arietinum L. HOM05D007013 ORTHO05D008999 2.8e-105 386.3 336 54.8
AUR62020414 Chenopodium quinoa HOM05D007013 ORTHO05D008999 3.6e-105 386.0 360 52.8
C02p44890 Brassica napus HOM05D007013 ORTHO05D008999 1.4e-104 384.0 393 51.1
Ah.06g182900 Amaranthus hybridus HOM05D007013 ORTHO05D008999 5.2e-104 382.1 392 49.5
BolC2t10525H Brassica oleracea HOM05D007013 ORTHO05D008999 6.8e-104 381.7 391 51.4
Sp2g09120 Schrenkiella parvula HOM05D007013 ORTHO05D008999 6.8e-104 381.7 397 50.6
HPP92_012407 Vanilla planifolia HOM05D007013 ORTHO05D008999 2.0e-103 380.2 394 50.3
Cpa.g.sc12.289 Carica papaya HOM05D007013 ORTHO05D008999 2.9e-102 376.3 392 51.3
BcaB07g30535 Brassica carinata HOM05D007013 ORTHO05D008999 3.7e-102 375.9 387 50.6
Thhalv10020871m.g Eutrema salsugineum HOM05D007013 ORTHO05D008999 8.3e-102 374.8 393 51.1
A02p28310 Brassica napus HOM05D007013 ORTHO05D008999 1.4e-101 374.0 375 52.3
COL.COLO4_09677 Corchorus olitorius HOM05D007013 ORTHO05D008999 1.4e-101 374.0 396 52.3
ClCG09G010880 Citrullus lanatus HOM05D007013 ORTHO05D008999 2.7e-100 369.8 390 49.5
FAN11G2199 Fragaria x ananassa HOM05D007013 ORTHO05D008999 1.2e-95 354.4 390 50.0
Sed0023076 Sechium edule HOM05D007013 ORTHO05D008999 1.5e-95 354.0 349 51.0
Manes.15G070387 Manihot esculenta HOM05D007013 ORTHO05D008999 3.2e-93 346.3 322 55.9
Prupe.4G215900 Prunus persica HOM05D007013 ORTHO05D008999 3.9e-91 339.3 390 48.7
BcaC03g16648 Brassica carinata HOM05D007013 ORTHO05D008999 8.6e-91 338.2 353 50.7
ATR0794G085 Amborella trichopoda HOM05D007013 ORTHO05D008999 9.6e-90 334.7 323 55.7
Dinv22254 Davidia involucrata HOM05D007013 ORTHO05D008999 9.6e-90 334.7 268 61.9
arahy.Tifrunner.gnm1.ann1.PYQ1JD Arachis hypogaea HOM05D007013 ORTHO05D008999 1.4e-88 330.9 315 50.2
Lj1A874G27 Lonicera japonica HOM05D007013 ORTHO05D008999 1.3e-86 324.3 295 55.9
Phvul.006G045700 Phaseolus vulgaris HOM05D007013 ORTHO05D008999 2.6e-79 300.1 302 51.7
AT3G20480 Arabidopsis thaliana HOM05D007013 ORTHO05D008999 1.7e-78 297.4 314 50.3
AUR62015801 Chenopodium quinoa HOM05D007013 ORTHO05D008999 2.9e-78 296.6 293 50.2
Rhsim06G0218600 Rhododendron simsii HOM05D007013 ORTHO05D008999 1.0e-75 288.1 270 54.8
SMO367G1261 Selaginella moellendorffii HOM05D007013 ORTHO05D008999 1.1e-74 284.6 378 42.9
Mapoly0002s0307 Marchantia polymorpha HOM05D007013 ORTHO05D008999 1.4e-72 277.7 394 41.9
Gohir.A01G080900 Gossypium hirsutum HOM05D007013 ORTHO05D008999 2.8e-65 253.4 243 52.7
SEGI_14581 Sequoiadendron giganteum HOM05D007013 ORTHO05D008999 2.5e-58 230.3 238 52.9
CARHR096240 Cardamine hirsuta HOM05D007013 ORTHO05D008999 2.1e-52 210.7 208 50.0
Zm00001eb030850 Zea mays HOM05D007013 ORTHO05D008999 6.1e-52 209.1 235 53.6
Pp3c19_1630 Physcomitrium patens HOM05D007013 ORTHO05D008999 1.5e-47 194.5 396 33.8
AagrBONN_evm.TU.Sc2ySwM_228.2947 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.7e-46 191.0 385 34.5
Glyma.18G095300 Glycine max HOM05D007013 ORTHO05D008999 3.6e-44 183.3 222 43.7
Os07g0102000 Oryza sativa ssp. japonica HOM05D007013 ORTHO05D008999 9.7e-42 175.3 207 42.0
CBR_g39764 Chara braunii HOM05D007013 ORTHO05D008999 1.8e-40 171.0 345 31.9
Glyma.18G095150 Glycine max HOM05D007013 ORTHO05D008999 7.2e-37 159.1 285 35.1
CDE05G3055 Ceratophyllum demersum HOM05D007013 ORTHO05D008999 9.1e-32 142.1 238 38.7
FAN16G0901 Fragaria x ananassa HOM05D007013 ORTHO05D008999 8.2e-25 119.0 102 64.7
RcHm_v2.0_Chr4g0424981 Rosa chinensis HOM05D007013 ORTHO05D008999 3.5e-23 113.6 89 59.6
TWI34G0353 Tripterygium wilfordii HOM05D007013 ORTHO05D008999 2.9e-22 110.5 134 41.8
Zm00001eb030810 Zea mays HOM05D007013 ORTHO05D008999 7.0e-16 89.4 91 50.5
SEGI_13858 Sequoiadendron giganteum HOM05D007013 ORTHO05D008999 9.5e-13 79.0 96 41.7
Medtr0152s0030 Medicago truncatula HOM05D007013 ORTHO05D008999 3.7e-09 67.0 103 36.9
Rhsim06G0218700 Rhododendron simsii HOM05D007013 ORTHO05D008999 3.1e-08 63.9 56 51.8


User provided reference genes

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