Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g064640.3 Solanum lycopersicum HOM05D006936 ORTHO05D008273 6.2e-91 337.4 168 100.0
PGSC0003DMG401022215 Solanum tuberosum HOM05D006936 ORTHO05D008273 4.0e-90 334.7 168 98.8
Sopen07g032840 Solanum pennellii HOM05D006936 ORTHO05D008273 1.2e-89 333.2 168 97.6
CAN.G337.138 Capsicum annuum HOM05D006936 ORTHO05D008273 1.0e-69 266.9 168 81.0
Peaxi162Scf00235g00220 Petunia axillaris HOM05D006936 ORTHO05D008273 1.1e-68 263.5 197 72.6
Nitab4.5_0003495g0030 Nicotiana tabacum HOM05D006936 ORTHO05D008273 6.5e-64 247.7 133 90.2
Nitab4.5_0007360g0030 Nicotiana tabacum HOM05D006936 ORTHO05D008273 7.9e-62 240.7 166 74.1
Thecc.07G035400 Theobroma cacao HOM05D006936 ORTHO05D008273 6.7e-61 237.7 178 66.9
Manes.03G129900 Manihot esculenta HOM05D006936 ORTHO05D008273 8.7e-61 237.3 169 69.2
Gorai.002G089200 Gossypium raimondii HOM05D006936 ORTHO05D008273 3.3e-60 235.3 178 66.3
BcaC07g38260 Brassica carinata HOM05D006936 ORTHO05D008273 5.7e-60 234.6 186 64.0
Hma1.2p1_0738F.1_g211120 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 7.4e-60 234.2 188 64.4
Hma1.2p1_2518F.1_g323766 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 7.4e-60 234.2 188 64.4
Gohir.D01G067300 Gossypium hirsutum HOM05D006936 ORTHO05D008273 9.7e-60 233.8 178 66.3
AL7G25870 Arabidopsis lyrata HOM05D006936 ORTHO05D008273 2.8e-59 232.3 185 63.2
Duzib213G0701 Durio zibethinus HOM05D006936 ORTHO05D008273 2.8e-59 232.3 178 67.4
MSTRG.12976 Avicennia marina HOM05D006936 ORTHO05D008273 6.3e-59 231.1 192 65.1
Carub.0007s1390 Capsella rubella HOM05D006936 ORTHO05D008273 6.3e-59 231.1 186 63.4
AT4G26965 Arabidopsis thaliana HOM05D006936 ORTHO05D008273 8.2e-59 230.7 185 63.2
Cpa.g.sc12.300 Carica papaya HOM05D006936 ORTHO05D008273 8.2e-59 230.7 183 65.0
THA.LOC104813424 Tarenaya hassleriana HOM05D006936 ORTHO05D008273 8.2e-59 230.7 189 62.4
Sp7g24910 Schrenkiella parvula HOM05D006936 ORTHO05D008273 1.4e-58 229.9 186 63.4
GSVIVG01037658001 Vitis vinifera HOM05D006936 ORTHO05D008273 2.4e-58 229.2 175 69.1
CSS0049611 Camellia sinensis var. sinensis HOM05D006936 ORTHO05D008273 6.9e-58 227.6 187 63.6
C08p10070 Brassica napus HOM05D006936 ORTHO05D008273 1.2e-57 226.9 186 63.4
BolC8t48685H Brassica oleracea HOM05D006936 ORTHO05D008273 1.2e-57 226.9 186 63.4
Cc05_g13850 Coffea canephora HOM05D006936 ORTHO05D008273 1.5e-57 226.5 187 63.1
Migut.H01824 Erythranthe guttata HOM05D006936 ORTHO05D008273 2.0e-57 226.1 181 64.1
BcaNung03571 Brassica carinata HOM05D006936 ORTHO05D008273 4.5e-57 224.9 186 61.8
BcaB03g12517 Brassica carinata HOM05D006936 ORTHO05D008273 1.0e-56 223.8 188 62.8
Haze_09683 Corylus avellana HOM05D006936 ORTHO05D008273 1.0e-56 223.8 186 62.9
Gohir.A01G080100 Gossypium hirsutum HOM05D006936 ORTHO05D008273 1.0e-56 223.8 178 65.2
Potri.003G122100 Populus trichocarpa HOM05D006936 ORTHO05D008273 1.3e-56 223.4 184 62.0
DCAR_022566 Daucus carota HOM05D006936 ORTHO05D008273 1.7e-56 223.0 187 61.5
CiPaw.11G190300 Carya illinoinensis HOM05D006936 ORTHO05D008273 2.9e-56 222.2 185 63.8
TWI39G1260 Tripterygium wilfordii HOM05D006936 ORTHO05D008273 5.0e-56 221.5 184 63.6
Ciclev10009642m.g Citrus clementina HOM05D006936 ORTHO05D008273 8.5e-56 220.7 183 64.5
unitig_8.g4785 Utricularia gibba HOM05D006936 ORTHO05D008273 8.5e-56 220.7 170 63.5
C01p23100 Brassica napus HOM05D006936 ORTHO05D008273 1.1e-55 220.3 186 61.8
TAR624G1327 Trochodendron aralioides HOM05D006936 ORTHO05D008273 1.1e-55 220.3 190 62.1
Eucgr.F03471 Eucalyptus grandis HOM05D006936 ORTHO05D008273 2.5e-55 219.2 184 59.8
MD11G1216700 Malus domestica HOM05D006936 ORTHO05D008273 3.2e-55 218.8 184 61.4
PSO210G5704 Papaver somniferum HOM05D006936 ORTHO05D008273 3.2e-55 218.8 183 62.3
PSO832G3825 Papaver somniferum HOM05D006936 ORTHO05D008273 4.2e-55 218.4 174 64.4
SGA_v2.0_scaffold8G04322 Striga asiatica HOM05D006936 ORTHO05D008273 4.2e-55 218.4 187 62.0
HPP92_004131 Vanilla planifolia HOM05D006936 ORTHO05D008273 7.2e-55 217.6 174 63.2
A01p18140 Brassica napus HOM05D006936 ORTHO05D008273 1.2e-54 216.9 189 60.3
HanXRQChr03g0076461 Helianthus annuus HOM05D006936 ORTHO05D008273 1.6e-54 216.5 188 60.6
BolC1t02244H Brassica oleracea HOM05D006936 ORTHO05D008273 2.7e-54 215.7 200 58.0
VMungo0540G1312 Vigna mungo HOM05D006936 ORTHO05D008273 2.7e-54 215.7 184 62.5
Phvul.006G044500 Phaseolus vulgaris HOM05D006936 ORTHO05D008273 6.1e-54 214.5 184 62.5
Aqoxy3G01790 Aquilegia oxysepala HOM05D006936 ORTHO05D008273 7.9e-54 214.2 195 60.5
BraA01t01769Z Brassica rapa HOM05D006936 ORTHO05D008273 1.4e-53 213.4 197 57.9
Ca_19852_v3 Cicer arietinum L. HOM05D006936 ORTHO05D008273 1.4e-53 213.4 185 58.9
Lj6g0001928 Lotus japonicus HOM05D006936 ORTHO05D008273 1.4e-53 213.4 184 63.0
Glyma.18G095900 Glycine max HOM05D006936 ORTHO05D008273 2.3e-53 212.6 183 60.7
ClCG10G005400 Citrullus lanatus HOM05D006936 ORTHO05D008273 3.0e-53 212.2 184 60.3
RcHm_v2.0_Chr5g0040171 Rosa chinensis HOM05D006936 ORTHO05D008273 3.0e-53 212.2 183 59.6
Glyma.08G317000 Glycine max HOM05D006936 ORTHO05D008273 3.9e-53 211.8 184 62.0
Lsat_1_v5_gn_9_93840 Lactuca sativa HOM05D006936 ORTHO05D008273 6.7e-53 211.1 183 58.5
Prupe.4G214700 Prunus persica HOM05D006936 ORTHO05D008273 8.8e-53 210.7 184 58.7
Medtr3g052260 Medicago truncatula HOM05D006936 ORTHO05D008273 1.1e-52 210.3 184 58.2
TPR.G33779 Trifolium pratense HOM05D006936 ORTHO05D008273 1.5e-52 209.9 185 58.4
PGR031G2182 Punica granatum HOM05D006936 ORTHO05D008273 3.3e-52 208.8 184 59.2
Sc16g0005990 Simmondsia chinensis HOM05D006936 ORTHO05D008273 3.3e-52 208.8 189 59.3
FvH4_3g22870 Fragaria vesca HOM05D006936 ORTHO05D008273 9.7e-52 207.2 180 60.6
FAN11G3489 Fragaria x ananassa HOM05D006936 ORTHO05D008273 9.7e-52 207.2 180 60.6
Lalb_Chr20g0113821 Lupinus albus HOM05D006936 ORTHO05D008273 1.3e-51 206.8 187 61.0
CsaV3_3G005130 Cucumis sativus L. HOM05D006936 ORTHO05D008273 3.7e-51 205.3 184 58.7
TWI38G2356 Tripterygium wilfordii HOM05D006936 ORTHO05D008273 3.7e-51 205.3 183 60.1
FAN21G0204 Fragaria x ananassa HOM05D006936 ORTHO05D008273 6.3e-51 204.5 180 58.3
BraA08t34018Z Brassica rapa HOM05D006936 ORTHO05D008273 1.4e-50 203.4 225 52.9
ECA240G2843 Erigeron canadensis HOM05D006936 ORTHO05D008273 1.8e-50 203.0 172 62.8
Psat5g178440 Pisum sativum HOM05D006936 ORTHO05D008273 1.8e-50 203.0 186 55.9
Potri.001G109600 Populus trichocarpa HOM05D006936 ORTHO05D008273 3.1e-50 202.2 183 59.6
Thhalv10026517m.g Eutrema salsugineum HOM05D006936 ORTHO05D008273 5.3e-50 201.4 134 72.4
A08p20640 Brassica napus HOM05D006936 ORTHO05D008273 2.0e-49 199.5 152 67.8
EL10Ac4g07798 Beta vulgaris HOM05D006936 ORTHO05D008273 3.4e-49 198.7 188 57.4
Os09g0500200 Oryza sativa ssp. japonica HOM05D006936 ORTHO05D008273 5.9e-49 198.0 182 60.4
Rhsim06G0217500 Rhododendron simsii HOM05D000228 ORTHO05D001122 7.7e-49 197.6 155 65.8
Oeu048401.1 Olea europaea HOM05D006936 ORTHO05D008273 2.9e-48 195.7 128 73.4
arahy.Tifrunner.gnm1.ann1.MX8M57 Arachis hypogaea HOM05D006936 ORTHO05D008273 9.4e-47 190.7 155 61.9
QL08p009960 Quercus lobata HOM05D006936 ORTHO05D008273 1.2e-46 190.3 230 47.8
arahy.Tifrunner.gnm1.ann1.HAV09U Arachis hypogaea HOM05D006936 ORTHO05D008273 2.1e-46 189.5 151 62.9
Hma1.2p1_0738F.1_g211130 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 3.0e-45 185.7 137 70.1
Cfa020336 Carpinus fangiana HOM05D000228 ORTHO05D001122 6.7e-45 184.5 171 57.3
Zm00001eb102230 Zea mays HOM05D006936 ORTHO05D008273 6.7e-45 184.5 182 57.1
Sed0005355 Sechium edule HOM05D006936 ORTHO05D008273 5.7e-44 181.4 128 68.8
Sabra01G0082900 Salix brachista HOM05D006936 ORTHO05D008273 1.7e-43 179.9 150 62.7
FAN16G3045 Fragaria x ananassa HOM05D006936 ORTHO05D008273 2.8e-43 179.1 202 52.5
ATR1094G005 Amborella trichopoda HOM05D006936 ORTHO05D008273 4.1e-42 175.3 143 62.9
CARHR234570 Cardamine hirsuta HOM05D006936 ORTHO05D008273 4.1e-42 175.3 151 60.9
Aa31LG5G12010 Aethionema arabicum HOM05D006936 ORTHO05D008273 5.9e-41 171.4 183 53.6
CDE05G0574 Ceratophyllum demersum HOM05D006936 ORTHO05D008273 1.3e-40 170.2 132 65.9
Nn1g03514 Nelumbo nucifera HOM05D006936 ORTHO05D008273 1.3e-40 170.2 189 51.3
MELO3C025377.2 Cucumis melo HOM05D006936 ORTHO05D008273 2.5e-39 166.0 189 50.3
MBI02_g21871_MAGBIO Magnolia biondii HOM05D006936 ORTHO05D008273 6.1e-38 161.4 218 46.3
Atru.chr2.3444 Acer truncatum HOM05D006936 ORTHO05D008273 1.0e-37 160.6 98 75.5
CANSAT11G0469 Cannabis sativa HOM05D006936 ORTHO05D008273 2.0e-36 156.4 187 48.7
Sabra18G0079500 Salix brachista HOM05D006936 ORTHO05D008273 3.7e-35 152.1 118 61.9
vmacro02233 Vaccinium macrocarpon HOM05D006936 ORTHO05D008273 1.1e-34 150.6 93 72.0
Dinv40761 Davidia involucrata HOM05D006936 ORTHO05D008273 7.0e-34 147.9 135 60.7
Hund23239 Selenicereus undatus HOM05D006936 ORTHO05D008273 2.5e-31 139.4 189 43.4
Actinidia24797 Actinidia chinensis HOM05D006936 ORTHO05D008273 1.2e-30 137.1 126 61.1
Hma1.2p1_0738F.1_g211110 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 5.2e-29 131.7 74 75.7
Os05g0538900 Oryza sativa ssp. japonica HOM05D006936 ORTHO05D008273 2.4e-26 122.9 90 68.9
AUR62020430 Chenopodium quinoa HOM05D006936 ORTHO05D008273 1.3e-24 117.1 218 39.0
Hma1.2p1_0738F.1_g211140 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 2.1e-22 109.8 122 54.1
Hma1.2p1_2518F.1_g323762 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 2.1e-22 109.8 122 54.1
Mapoly0093s0007 Marchantia polymorpha HOM05D006936 ORTHO05D008273 4.0e-21 105.5 163 39.9
Pp3c15_25830 Physcomitrium patens HOM05D006936 ORTHO05D008273 1.7e-19 100.1 154 39.0
Ah.06g185850 Amaranthus hybridus HOM05D006936 ORTHO05D008273 2.1e-14 83.2 112 50.0
arahy.Tifrunner.gnm1.ann1.XX62UZ Arachis hypogaea HOM05D006936 ORTHO05D008273 2.8e-14 82.8 111 51.4
AUR62015785 Chenopodium quinoa HOM05D000355 ORTHO05D000227 6.6e-08 61.6 109 39.4
SEGI_32271 Sequoiadendron giganteum HOM05D006301 ORTHO05D008273 1.5e-07 60.5 45 62.2
DCAR_000990 Daucus carota HOM05D006936 ORTHO05D008273 4.3e-07 58.9 66 56.1
Cre09.g401150 Chlamydomonas reinhardtii HOM05D006936 ORTHO05D008273 4.7e-06 55.5 160 26.9


User provided reference genes

Program Settings