Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g064480.1 Solanum lycopersicum HOM05D007003 ORTHO05D008499 9.3e-184 646.7 326 100.0
Sopen07g032680 Solanum pennellii HOM05D007003 ORTHO05D008499 5.8e-170 600.9 326 93.6
PGSC0003DMG400042605 Solanum tuberosum HOM05D007003 ORTHO05D008499 3.0e-166 588.6 326 92.0
Nitab4.5_0001913g0010 Nicotiana tabacum HOM05D007003 ORTHO05D008499 3.2e-136 488.8 326 78.2
Nitab4.5_0003812g0060 Nicotiana tabacum HOM05D007003 ORTHO05D008499 5.5e-128 461.5 326 74.5
Peaxi162Scf00964g00113 Petunia axillaris HOM05D007003 ORTHO05D008499 9.5e-120 434.1 349 67.9
Oeu007586.1 Olea europaea HOM05D007003 ORTHO05D008499 3.9e-97 359.0 319 61.1
Cc05_g13800 Coffea canephora HOM05D007003 ORTHO05D008499 1.5e-93 347.1 317 61.5
Migut.M01775 Erythranthe guttata HOM05D007003 ORTHO05D008499 4.9e-92 342.0 332 56.9
Dinv40746 Davidia involucrata HOM05D007003 ORTHO05D008499 9.2e-91 337.8 347 56.8
Actinidia36944 Actinidia chinensis HOM05D001273 ORTHO05D000023 1.9e-88 330.1 318 58.5
CSS0047719 Camellia sinensis var. sinensis HOM05D007003 ORTHO05D008499 9.5e-88 327.8 373 52.5
vmacro11731 Vaccinium macrocarpon HOM05D007003 ORTHO05D008499 6.2e-87 325.1 318 56.3
Lsat_1_v5_gn_5_6061 Lactuca sativa HOM05D007003 ORTHO05D008499 1.1e-86 324.3 311 57.2
Lj1P870T43 Lonicera japonica HOM05D007003 ORTHO05D008499 8.9e-86 321.2 314 58.6
DCAR_022556 Daucus carota HOM05D007003 ORTHO05D008499 1.3e-84 317.4 310 58.4
Rhsim06G0216400 Rhododendron simsii HOM05D000561 ORTHO05D000514 2.4e-83 313.2 312 57.1
Lalb_Chr04g0248491 Lupinus albus HOM05D007003 ORTHO05D008499 7.1e-83 311.6 375 48.8
Gohir.A04G018400 Gossypium hirsutum HOM05D007003 ORTHO05D008499 1.2e-82 310.8 358 50.8
Gorai.009G435200 Gossypium raimondii HOM05D007003 ORTHO05D008499 6.0e-82 308.5 358 50.3
ECA246G4814 Erigeron canadensis HOM05D001273 ORTHO05D000023 1.7e-81 307.0 339 51.9
Glyma.14G024800 Glycine max HOM05D007003 ORTHO05D008499 1.7e-81 307.0 397 47.6
Medtr5g092280 Medicago truncatula HOM05D007003 ORTHO05D008499 3.0e-81 306.2 368 51.4
Gohir.D05G367600 Gossypium hirsutum HOM05D007003 ORTHO05D008499 6.6e-81 305.1 358 49.7
VMungo0647G1301 Vigna mungo HOM05D007003 ORTHO05D008499 6.6e-81 305.1 389 47.6
MELO3C018208.2 Cucumis melo HOM05D007003 ORTHO05D008499 1.5e-80 303.9 336 50.3
Phvul.008G266200 Phaseolus vulgaris HOM05D007003 ORTHO05D008499 1.5e-80 303.9 390 46.9
Sabra16G0288900 Salix brachista HOM05D007003 ORTHO05D008499 4.3e-80 302.4 329 50.8
TPR.G22251 Trifolium pratense HOM05D007003 ORTHO05D008499 2.8e-79 299.7 323 52.3
Sed0008518 Sechium edule HOM05D007003 ORTHO05D008499 6.2e-79 298.5 331 50.2
CsaV3_3G044430 Cucumis sativus L. HOM05D007003 ORTHO05D008499 8.1e-79 298.1 334 50.3
Potri.001G423900 Populus trichocarpa HOM05D007003 ORTHO05D008499 1.4e-78 297.4 329 50.5
Atru.chr2.3373 Acer truncatum HOM05D007003 ORTHO05D008499 1.8e-78 297.0 381 47.2
Manes.03G124400 Manihot esculenta HOM05D007003 ORTHO05D008499 2.0e-77 293.5 332 50.9
PSO675G0160 Papaver somniferum HOM05D007003 ORTHO05D008499 9.9e-77 291.2 323 52.3
Ah.04g165820 Amaranthus hybridus HOM05D007003 ORTHO05D008499 2.2e-76 290.0 382 45.5
CiPaw.12G128900 Carya illinoinensis HOM05D007003 ORTHO05D008499 3.8e-76 289.3 369 48.0
EL10Ac4g07838 Beta vulgaris HOM05D007003 ORTHO05D008499 1.9e-75 287.0 388 44.6
Ciclev10008359m.g Citrus clementina HOM05D007003 ORTHO05D008499 3.2e-75 286.2 402 45.0
Nn1g03566 Nelumbo nucifera HOM05D007003 ORTHO05D008499 3.2e-75 286.2 436 42.7
GSVIVG01037627001 Vitis vinifera HOM05D007003 ORTHO05D008499 5.4e-75 285.4 354 49.7
TAR627G0793 Trochodendron aralioides HOM05D007003 ORTHO05D008499 7.1e-75 285.0 398 45.7
AUR62020466 Chenopodium quinoa HOM05D007003 ORTHO05D008499 1.6e-74 283.9 396 44.4
Aqoxy7G03837 Aquilegia oxysepala HOM05D007003 ORTHO05D008499 7.8e-74 281.6 387 44.2
MD11G1220900 Malus domestica HOM05D001273 ORTHO05D008499 3.0e-73 279.6 427 43.1
RcHm_v2.0_Chr5g0039141 Rosa chinensis HOM05D007003 ORTHO05D008499 1.1e-72 277.7 426 43.0
LjContig00272g0003747 Lotus japonicus HOM05D007003 ORTHO05D008499 1.5e-72 277.3 370 47.3
AUR62015746 Chenopodium quinoa HOM05D007003 ORTHO05D008499 2.5e-72 276.6 381 45.1
Thecc.07G042400 Theobroma cacao HOM05D007003 ORTHO05D008499 2.5e-72 276.6 430 40.2
Prupe.4G211300 Prunus persica HOM05D007003 ORTHO05D008499 3.3e-72 276.2 427 44.0
TWI39G0907 Tripterygium wilfordii HOM05D007003 ORTHO05D008499 9.6e-72 274.6 312 52.6
BolC2t07756H Brassica oleracea HOM05D001404 ORTHO05D002309 2.8e-71 273.1 327 50.2
Cfa020358 Carpinus fangiana HOM05D007003 ORTHO05D008499 3.6e-71 272.7 436 42.0
FvH4_3g22471 Fragaria vesca HOM05D007003 ORTHO05D008499 4.8e-71 272.3 418 42.3
HPP92_012320 Vanilla planifolia HOM05D007003 ORTHO05D008499 4.8e-71 272.3 359 45.7
unitig_578.g16000 Utricularia gibba HOM05D007003 ORTHO05D008499 6.2e-71 271.9 326 49.1
HPP92_012396 Vanilla planifolia HOM05D007003 ORTHO05D008499 1.4e-70 270.8 359 45.4
arahy.Tifrunner.gnm1.ann1.422Z41 Arachis hypogaea HOM05D007003 ORTHO05D008499 1.8e-70 270.4 419 41.8
Haze_09661 Corylus avellana HOM05D007003 ORTHO05D008499 1.8e-70 270.4 444 41.7
arahy.Tifrunner.gnm1.ann1.6A6QM9 Arachis hypogaea HOM05D007003 ORTHO05D008499 3.1e-70 269.6 424 42.2
A02p10000 Brassica napus HOM05D001404 ORTHO05D008499 5.3e-70 268.9 328 50.0
C02p16580 Brassica napus HOM05D001404 ORTHO05D002309 5.3e-70 268.9 327 49.8
BraA02t06064Z Brassica rapa HOM05D001404 ORTHO05D002309 5.3e-70 268.9 328 50.0
Eucgr.F00779 Eucalyptus grandis HOM05D007003 ORTHO05D008499 6.9e-70 268.5 370 44.6
FAN21G0080 Fragaria x ananassa HOM05D007003 ORTHO05D008499 1.5e-69 267.3 435 39.8
CANSAT21G1622 Cannabis sativa HOM05D007003 ORTHO05D008499 2.6e-69 266.5 441 39.7
Eucgr.F00790 Eucalyptus grandis HOM05D007003 ORTHO05D008499 2.6e-69 266.5 322 48.4
QL03p009927 Quercus lobata HOM05D007003 ORTHO05D008499 3.4e-69 266.2 453 41.5
CAN.G337.121 Capsicum annuum HOM05D007003 ORTHO05D008499 4.5e-69 265.8 274 57.7
BcaB05g22167 Brassica carinata HOM05D007003 ORTHO05D008499 9.9e-69 264.6 323 49.8
Psat2g013360 Pisum sativum HOM05D007003 ORTHO05D008499 1.3e-68 264.2 318 50.3
QL08p011145 Quercus lobata HOM05D007003 ORTHO05D008499 3.8e-68 262.7 454 40.1
Sp6g16850 Schrenkiella parvula HOM05D007003 ORTHO05D008499 3.8e-68 262.7 361 46.8
Cfa020360 Carpinus fangiana HOM05D007003 ORTHO05D008499 4.9e-68 262.3 425 43.1
CARHR268220 Cardamine hirsuta HOM05D007003 ORTHO05D008499 1.6e-66 257.3 359 46.2
THA.LOC104817663 Tarenaya hassleriana HOM05D007003 ORTHO05D008499 1.3e-65 254.2 378 42.1
Eucgr.F00879 Eucalyptus grandis HOM05D007003 ORTHO05D008499 2.3e-65 253.4 316 47.5
PGR119G0071 Punica granatum HOM05D007003 ORTHO05D008499 2.3e-65 253.4 372 41.9
Cpa.g.sc97.17 Carica papaya HOM05D007003 ORTHO05D008499 3.9e-65 252.7 441 40.4
Thhalv10013739m.g Eutrema salsugineum HOM05D007003 ORTHO05D008499 3.9e-65 252.7 356 45.5
Duzib213G0769 Durio zibethinus HOM05D007003 ORTHO05D008499 6.7e-65 251.9 478 38.1
Aa31LG3G10810 Aethionema arabicum HOM05D007003 ORTHO05D008499 1.1e-64 251.1 361 44.9
SGA_v2.0_scaffold424G51477 Striga asiatica HOM05D007003 ORTHO05D008499 1.1e-64 251.1 351 44.4
AT5G54880 Arabidopsis thaliana HOM05D007003 ORTHO05D008499 2.5e-64 250.0 362 43.6
Eucgr.F00955 Eucalyptus grandis HOM05D007003 ORTHO05D008499 5.6e-64 248.8 345 43.8
AL8G30340 Arabidopsis lyrata HOM05D007003 ORTHO05D008499 2.1e-63 246.9 374 41.7
ATR0752G213 Amborella trichopoda HOM05D007003 ORTHO05D008499 5.3e-62 242.3 428 38.8
Eucgr.L01323 Eucalyptus grandis HOM05D007003 ORTHO05D008499 5.5e-59 232.3 306 45.1
SalBow8G3099 Salvia bowleyana HOM05D007003 ORTHO05D008499 7.9e-58 228.4 204 61.3
Eucgr.F00922 Eucalyptus grandis HOM05D007003 ORTHO05D008499 4.8e-55 219.2 339 41.9
Actinidia05100 Actinidia chinensis HOM05D007003 ORTHO05D008499 6.9e-54 215.3 235 54.0
CDE11G0477 Ceratophyllum demersum HOM05D007003 ORTHO05D008499 1.5e-53 214.2 259 46.3
MBI02_g19288_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 7.6e-53 211.8 551 33.2
Sc16g0006140 Simmondsia chinensis HOM05D007003 ORTHO05D008499 1.0e-52 211.5 364 37.9
Ca_26481_v3 Cicer arietinum L. HOM05D007003 ORTHO05D008499 1.2e-50 204.5 218 52.8
MBI02_g22102_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 1.0e-49 201.4 173 61.8
Zm00001eb219850 Zea mays HOM05D007003 ORTHO05D008499 5.1e-49 199.1 481 30.8
Os03g0568600 Oryza sativa ssp. japonica HOM05D007003 ORTHO05D008499 3.7e-47 193.0 484 30.4
Eucgr.F00913 Eucalyptus grandis HOM05D007003 ORTHO05D008499 2.4e-46 190.3 333 39.3
SEGI_36701 Sequoiadendron giganteum HOM05D007003 ORTHO05D008499 9.0e-46 188.3 313 37.7
Eucgr.F00897 Eucalyptus grandis HOM05D007003 ORTHO05D008499 3.4e-45 186.4 298 41.3
Eucgr.F00928 Eucalyptus grandis HOM05D007003 ORTHO05D008499 5.0e-44 182.6 307 38.8
TPR.G17434 Trifolium pratense HOM05D007003 ORTHO05D008499 5.5e-43 179.1 211 50.2
Zm00001eb026290 Zea mays HOM05D007003 ORTHO05D008499 2.1e-42 177.2 154 53.9
Carub.0008s1518 Capsella rubella HOM05D007003 ORTHO05D008499 2.3e-41 173.7 160 59.4
BcaC03g14277 Brassica carinata HOM05D007003 ORTHO05D008499 1.9e-40 170.6 153 60.8
CAN.G337.122 Capsicum annuum HOM05D007003 ORTHO05D008499 3.1e-38 163.3 87 87.4
AagrBONN_evm.TU.Sc2ySwM_362.2079 Anthoceros agrestis HOM05D007003 ORTHO05D008499 5.5e-35 152.5 340 32.6
TPR.G22255 Trifolium pratense HOM05D005190 ORTHO05D006183 7.9e-34 148.7 247 39.7
Ca_03331_v3 Cicer arietinum L. HOM05D007003 ORTHO05D008499 4.4e-32 142.9 152 51.3
Mapoly0032s0131 Marchantia polymorpha HOM05D007003 ORTHO05D008499 1.4e-30 137.9 339 33.9
Pp3c4_4830 Physcomitrium patens HOM05D007003 ORTHO05D008499 6.5e-28 129.0 311 32.2
SMO339G0013 Selaginella moellendorffii HOM05D007003 ORTHO05D008499 1.0e-25 121.7 307 32.6
MD03G1204100 Malus domestica HOM05D007003 ORTHO05D008499 5.2e-25 119.4 109 59.6
MBI02_g22101_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D002463 2.6e-24 117.1 81 70.4
TPR.G1180 Trifolium pratense HOM05D007003 ORTHO05D008499 4.8e-23 112.8 83 63.9
TPR.G1231 Trifolium pratense HOM05D007003 ORTHO05D008499 1.7e-20 104.4 118 46.6
Zm00001eb352490 Zea mays HOM05D006576 ORTHO05D008499 2.1e-18 97.4 78 55.1
ClCG05G014280 Citrullus lanatus HOM05D007003 ORTHO05D008499 4.4e-16 89.7 277 26.0
Actinidia05099 Actinidia chinensis HOM05D001273 ORTHO05D000023 2.5e-11 73.9 64 62.5
Medtr0590s0020 Medicago truncatula HOM05D007003 ORTHO05D263438 6.8e-09 65.9 171 31.6


User provided reference genes

Program Settings