Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g064350.3 Solanum lycopersicum HOM05D005724 ORTHO05D006636 2.2e-279 965.3 619 100.0
Sopen07g032510 Solanum pennellii HOM05D005724 ORTHO05D006636 1.8e-273 945.7 619 97.3
PGSC0003DMG400013918 Solanum tuberosum HOM05D005724 ORTHO05D006636 2.3e-244 849.0 623 88.1
CAN.G219.49 Capsicum annuum HOM05D005724 ORTHO05D006636 5.2e-220 768.1 633 76.3
Nitab4.5_0003319g0010 Nicotiana tabacum HOM05D005724 ORTHO05D006636 1.2e-184 650.6 657 70.0
Nitab4.5_0000193g0130 Nicotiana tabacum HOM05D005724 ORTHO05D006636 1.0e-183 647.5 658 69.3
Peaxi162Scf00691g00055 Petunia axillaris HOM05D005724 ORTHO05D006636 8.8e-175 617.8 702 60.5
Nitab4.5_0001290g0080 Nicotiana tabacum HOM05D005724 ORTHO05D006636 6.3e-149 531.9 636 63.4
Oeu040430.1 Olea europaea HOM05D005724 ORTHO05D006636 4.9e-141 505.8 659 52.2
Hma1.2p1_0023F.1_g015530 Hydrangea macrophylla HOM05D005724 ORTHO05D006636 4.3e-137 492.7 650 53.7
Dinv40379 Davidia involucrata HOM05D005724 ORTHO05D006636 1.2e-136 491.1 653 53.8
Actinidia03489 Actinidia chinensis HOM05D005724 ORTHO05D006636 5.2e-135 485.7 652 52.0
CSS0043370 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 2.0e-134 483.8 648 52.0
unitig_46.g18493 Utricularia gibba HOM05D005724 ORTHO05D006636 5.0e-130 469.2 641 49.1
vmacro00813 Vaccinium macrocarpon HOM05D005724 ORTHO05D006636 1.6e-128 464.2 651 51.5
MSTRG.1463 Avicennia marina HOM05D005724 ORTHO05D006636 3.4e-126 456.4 611 54.0
Migut.C01153 Erythranthe guttata HOM05D005724 ORTHO05D006636 2.4e-124 450.3 649 49.6
Nitab4.5_0013479g0020 Nicotiana tabacum HOM05D005724 ORTHO05D006636 1.2e-123 448.0 599 58.8
SGA_v2.0_scaffold52G18986 Striga asiatica HOM05D005724 ORTHO05D006636 2.0e-123 447.2 641 49.9
TAR623G1038 Trochodendron aralioides HOM05D005724 ORTHO05D006636 2.5e-121 440.3 652 49.7
TAR369G1103 Trochodendron aralioides HOM05D005724 ORTHO05D006636 6.2e-120 435.6 652 49.7
DCAR_014109 Daucus carota HOM05D005724 ORTHO05D006636 8.9e-119 431.8 639 47.3
Cc10_g09550 Coffea canephora HOM05D005724 ORTHO05D006636 1.2e-118 431.4 673 47.4
TWI12G1283 Tripterygium wilfordii HOM05D005724 ORTHO05D006636 5.8e-118 429.1 662 45.3
Sc16g0010460 Simmondsia chinensis HOM05D005724 ORTHO05D006636 1.7e-117 427.6 649 52.9
CiPaw.07G081600 Carya illinoinensis HOM05D005724 ORTHO05D006636 1.3e-114 417.9 658 48.6
Oeu026139.1 Olea europaea HOM05D005724 ORTHO05D006636 1.3e-114 417.9 531 56.3
RhsimUnG0095000 Rhododendron simsii HOM05D005724 ORTHO05D006636 6.6e-114 415.6 646 49.1
HanXRQChr16g0529541 Helianthus annuus HOM05D005724 ORTHO05D006636 1.9e-113 414.1 651 51.5
Lalb_Chr18g0058031 Lupinus albus HOM05D005724 ORTHO05D006636 5.6e-113 412.5 649 46.1
Ca_00849_v3 Cicer arietinum L. HOM05D005724 ORTHO05D006636 9.5e-113 411.8 593 45.0
PGR031G2108 Punica granatum HOM05D005724 ORTHO05D006636 8.1e-112 408.7 691 46.0
Sabra01G0096300 Salix brachista HOM05D005724 ORTHO05D006636 3.1e-111 406.8 632 47.6
Sed0018672 Sechium edule HOM05D005724 ORTHO05D006636 5.2e-111 406.0 664 47.9
CSS0028855 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 6.8e-111 405.6 520 51.2
Manes.13G004400 Manihot esculenta HOM05D005724 ORTHO05D006636 1.2e-110 404.8 658 48.9
Lj6g0014403 Lotus japonicus HOM05D005724 ORTHO05D006636 1.4e-108 397.9 682 43.0
Psat0s1379g0200 Pisum sativum HOM05D005724 ORTHO05D006636 3.2e-108 396.7 602 42.9
Aqoxy1G00698 Aquilegia oxysepala HOM05D005724 ORTHO05D006636 4.1e-108 396.4 653 45.9
CsaV3_4G029120 Cucumis sativus L. HOM05D005724 ORTHO05D006636 7.1e-108 395.6 646 47.2
ECA234G3960 Erigeron canadensis HOM05D005724 ORTHO05D006636 5.1e-106 389.4 571 55.2
Phvul.006G127600 Phaseolus vulgaris HOM05D005724 ORTHO05D006636 1.5e-105 387.9 592 46.5
Atru.chr12.1744 Acer truncatum HOM05D005724 ORTHO05D006636 1.2e-104 384.8 679 45.4
Lsat_1_v5_gn_4_15540 Lactuca sativa HOM05D005724 ORTHO05D006636 2.1e-104 384.0 646 45.0
VMungo0540G1901 Vigna mungo HOM05D005724 ORTHO05D006636 2.8e-104 383.6 668 40.9
Ciclev10011241m.g Citrus clementina HOM05D005724 ORTHO05D006636 8.1e-104 382.1 666 45.2
Glyma.15G131100 Glycine max HOM05D005724 ORTHO05D006636 1.1e-103 381.7 683 43.8
Ah.06g195410 Amaranthus hybridus HOM05D005724 ORTHO05D006636 1.4e-103 381.3 552 52.5
Aa31LG8G10800 Aethionema arabicum HOM05D005724 ORTHO05D006636 2.4e-103 380.6 557 54.2
Cfa006250 Carpinus fangiana HOM05D005724 ORTHO05D006636 9.0e-103 378.6 666 44.0
MBI13_g30854_MAGBIO Magnolia biondii HOM05D005724 ORTHO05D006636 9.0e-103 378.6 690 42.0
ATR0307G120 Amborella trichopoda HOM05D005724 ORTHO05D006636 2.6e-102 377.1 634 42.4
Haze_04583 Corylus avellana HOM05D005724 ORTHO05D006636 2.9e-101 373.6 668 46.6
Glyma.09G025000 Glycine max HOM05D005724 ORTHO05D006636 3.2e-100 370.2 684 45.0
Gorai.004G263700 Gossypium raimondii HOM05D005724 ORTHO05D006636 5.4e-100 369.4 667 44.2
CANSAT35G0128 Cannabis sativa HOM05D005724 ORTHO05D006636 7.1e-100 369.0 596 53.7
SalBow2G0175 Salvia bowleyana HOM05D005724 ORTHO05D006636 2.1e-99 367.5 657 45.1
Potri.001G125200 Populus trichocarpa HOM05D005724 ORTHO05D006636 8.7e-98 362.1 632 44.5
Thecc.05G190100 Theobroma cacao HOM05D005724 ORTHO05D006636 4.3e-97 359.8 692 45.2
TPR.G26364 Trifolium pratense HOM05D005724 ORTHO05D006636 7.3e-97 359.0 582 46.2
THA.LOC104821618 Tarenaya hassleriana HOM05D005724 ORTHO05D006636 9.6e-97 358.6 592 52.9
arahy.Tifrunner.gnm1.ann1.EBNE7V Arachis hypogaea HOM05D005724 ORTHO05D006636 1.6e-96 357.8 614 46.1
Medtr2g030390 Medicago truncatula HOM05D005724 ORTHO05D006636 3.6e-96 356.7 580 46.6
Eucgr.H01410 Eucalyptus grandis HOM05D005724 ORTHO05D006636 4.8e-96 356.3 667 41.7
Gohir.D08G247200 Gossypium hirsutum HOM05D005724 ORTHO05D006636 1.4e-95 354.8 671 42.3
COL.COLO4_36609 Corchorus olitorius HOM05D005724 ORTHO05D006636 6.9e-95 352.4 650 42.0
arahy.Tifrunner.gnm1.ann1.GIZW0B Arachis hypogaea HOM05D005724 ORTHO05D006636 9.0e-95 352.1 685 43.4
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 1.2e-94 351.7 647 44.5
Gohir.A08G226800 Gossypium hirsutum HOM05D005724 ORTHO05D006636 1.2e-94 351.7 686 44.3
AL3G39270 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 4.9e-93 346.3 582 52.4
ClCG09G009940 Citrullus lanatus HOM05D005724 ORTHO05D006636 4.9e-93 346.3 646 46.4
Lj2C388T1 Lonicera japonica HOM05D005724 ORTHO05D006636 1.1e-92 345.1 641 43.4
Carub.0003s2445 Capsella rubella HOM05D005724 ORTHO05D006636 1.2e-91 341.7 622 48.4
Nn2g11375 Nelumbo nucifera HOM05D005724 ORTHO05D006636 6.7e-90 335.9 542 50.0
MD12G1263700 Malus domestica HOM05D005724 ORTHO05D006636 2.8e-88 330.5 598 46.5
Prupe.6G362700 Prunus persica HOM05D005724 ORTHO05D006636 1.8e-87 327.8 564 50.9
QL03p046485 Quercus lobata HOM05D005724 ORTHO05D006636 2.6e-86 323.9 655 46.9
Duzib168G0454 Durio zibethinus HOM05D005724 ORTHO05D006636 7.6e-86 322.4 677 43.1
AL8G20560 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 9.9e-86 322.0 629 47.7
RcHm_v2.0_Chr3g0447651 Rosa chinensis HOM05D005724 ORTHO05D006636 2.9e-85 320.5 699 41.1
CDE09G0189 Ceratophyllum demersum HOM05D005724 ORTHO05D006636 1.0e-82 312.0 445 52.1
QL10p055615 Quercus lobata HOM05D005724 ORTHO05D006636 1.3e-82 311.6 645 45.0
QL10p055704 Quercus lobata HOM05D005724 ORTHO05D006636 3.0e-82 310.5 651 45.2
AT3G24080 Arabidopsis thaliana HOM05D005724 ORTHO05D006636 8.7e-82 308.9 580 46.6
FvH4_6g00350 Fragaria vesca HOM05D005724 ORTHO05D006636 3.3e-81 307.0 675 45.6
vmacro22819 Vaccinium macrocarpon HOM05D005724 ORTHO05D006636 1.1e-79 302.0 639 40.4
Peaxi162Scf00916g00115 Petunia axillaris HOM05D005724 ORTHO05D006636 1.4e-79 301.6 368 62.8
MELO3C000397.2 Cucumis melo HOM05D005724 ORTHO05D006636 4.0e-79 300.1 564 44.7
CARHR100150 Cardamine hirsuta HOM05D005724 ORTHO05D006636 4.5e-78 296.6 536 49.3
SEGI_23235 Sequoiadendron giganteum HOM05D005724 ORTHO05D006636 1.7e-77 294.7 609 45.5
PSO133G0013 Papaver somniferum HOM05D005724 ORTHO05D006636 5.5e-76 289.7 593 48.4
Os05g0490000 Oryza sativa ssp. japonica HOM05D005724 ORTHO05D006636 1.6e-75 288.1 586 42.8
PSO541G5859 Papaver somniferum HOM05D005724 ORTHO05D006636 2.7e-75 287.3 596 46.8
Zm00001eb227770 Zea mays HOM05D005724 ORTHO05D006636 2.3e-74 284.3 585 45.5
Nitab4.5_0005621g0050 Nicotiana tabacum HOM05D005724 ORTHO05D006636 1.3e-72 278.5 331 57.7
HPP92_010851 Vanilla planifolia HOM05D005724 ORTHO05D006636 5.0e-69 266.5 433 46.7
SHI13708 Sapria himalayana HOM05D005724 ORTHO05D006636 1.1e-68 265.4 660 36.8
AagrBONN_evm.TU.Sc2ySwM_228.2542 Anthoceros agrestis HOM05D005724 ORTHO05D006636 9.3e-68 262.3 595 37.0
Mapoly0029s0120 Marchantia polymorpha HOM05D005724 ORTHO05D006636 1.0e-66 258.8 596 37.4
AUR62041171 Chenopodium quinoa HOM05D005724 ORTHO05D006636 1.1e-65 255.4 433 44.6
Mapoly0032s0003 Marchantia polymorpha HOM05D005724 ORTHO05D006636 1.1e-65 255.4 593 37.8
Sp3g21860 Schrenkiella parvula HOM05D005724 ORTHO05D006636 6.3e-64 249.6 643 45.1
BcaB06g26592 Brassica carinata HOM05D005724 ORTHO05D006636 1.2e-62 245.4 556 42.8
CSS0001117 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 3.8e-61 240.4 308 48.1
Pp3c2_10220 Physcomitrium patens HOM05D005724 ORTHO05D006636 6.5e-61 239.6 567 38.1
AL8G20450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 3.2e-60 237.3 444 43.9
AUR62029295 Chenopodium quinoa HOM05D005724 ORTHO05D006636 1.4e-58 231.9 421 43.0
BolC7t41765H Brassica oleracea HOM05D005724 ORTHO05D006636 7.4e-57 226.1 631 39.3
BraA07t28608Z Brassica rapa HOM05D005724 ORTHO05D006636 7.4e-57 226.1 541 41.6
C07p12790 Brassica napus HOM05D005724 ORTHO05D006636 9.7e-57 225.7 546 41.8
A07p08250 Brassica napus HOM05D005724 ORTHO05D006636 3.7e-56 223.8 541 41.4
BcaC06g35627 Brassica carinata HOM05D005724 ORTHO05D006636 4.1e-55 220.3 549 41.5
Dinv27342 Davidia involucrata HOM05D005724 ORTHO05D006636 8.8e-50 202.6 322 51.6
Glyma.13G144202 Glycine max HOM05D005724 ORTHO05D006636 9.4e-44 182.6 253 45.5
SMO118G0180 Selaginella moellendorffii HOM05D005724 ORTHO05D006636 3.0e-42 177.6 568 37.9
Dinv27343 Davidia involucrata HOM05D005724 ORTHO05D006636 1.0e-37 162.5 182 48.9
Cre10.g441450 Chlamydomonas reinhardtii HOM05D005724 ORTHO05D006636 2.8e-32 144.4 642 32.9
Peaxi162Scf00916g00131 Petunia axillaris HOM05D005724 ORTHO05D006636 3.7e-32 144.1 131 61.1
MCO14G354 Micromonas commoda HOM05D005724 ORTHO05D006636 8.3e-32 142.9 572 34.1
Cpa.g.sc48.98 Carica papaya HOM05D005724 ORTHO05D006636 1.2e-30 139.0 231 49.4
CBR_g46717 Chara braunii HOM05D005724 ORTHO05D006636 2.1e-27 128.3 601 32.1
MSTRG.22873 Avicennia marina HOM05D005724 ORTHO05D006636 2.3e-26 124.8 170 46.5
Nitab4.5_0005621g0090 Nicotiana tabacum HOM05D005724 ORTHO05D006636 1.5e-25 122.1 104 77.9
Psat1g166960 Pisum sativum HOM05D005724 ORTHO05D006636 2.0e-25 121.7 286 37.1
PRCOL_00003643 Prasinoderma coloniale HOM05D005724 ORTHO05D006636 7.5e-25 119.8 623 26.2
AL8G20410 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 7.3e-20 103.2 111 51.4
MD04G1246400 Malus domestica HOM05D005724 ORTHO05D006636 2.3e-18 98.2 108 51.9
Nitab4.5_0005621g0100 Nicotiana tabacum HOM05D005724 ORTHO05D006636 3.4e-17 94.4 128 56.2
MELO3C003738.2 Cucumis melo HOM05D005724 ORTHO05D006636 9.8e-17 92.8 103 54.4
MELO3C017820.2 Cucumis melo HOM05D005724 ORTHO05D006636 2.2e-16 91.7 103 55.3
AagrBONN_evm.TU.Sc2ySwM_344.5238 Anthoceros agrestis HOM05D005724 ORTHO05D006636 3.2e-15 87.8 528 28.4
PSO339G2657 Papaver somniferum HOM05D005724 ORTHO05D006636 4.1e-15 87.4 173 47.4
Cfa025790 Carpinus fangiana HOM05D005724 ORTHO05D006636 1.2e-11 75.9 570 28.9
AagrBONN_evm.TU.Sc2ySwM_228.4909 Anthoceros agrestis HOM05D005724 ORTHO05D006636 2.1e-06 58.5 71 43.7


User provided reference genes

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