Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g064300.3 Solanum lycopersicum HOM05D004411 ORTHO05D005569 6.5e-205 717.2 381 100.0
CAN.G337.104 Capsicum annuum HOM05D004411 ORTHO05D005569 2.9e-168 595.5 381 83.5
PGSC0003DMG402013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 7.1e-167 590.9 381 83.7
Peaxi162Scf00450g00868 Petunia axillaris HOM05D004411 ORTHO05D005569 9.9e-161 570.5 382 81.2
Nitab4.5_0009551g0010 Nicotiana tabacum HOM05D004411 ORTHO05D005569 1.1e-154 550.4 406 75.4
Sopen07g032450 Solanum pennellii HOM05D004411 ORTHO05D005569 3.4e-137 492.3 269 97.4
Nitab4.5_0000397g0320 Nicotiana tabacum HOM05D004411 ORTHO05D005569 3.3e-132 475.7 416 65.9
Cc02_g24710 Coffea canephora HOM05D004411 ORTHO05D005569 1.5e-113 413.7 385 61.8
CSS0013783 Camellia sinensis var. sinensis HOM05D004411 ORTHO05D005569 2.2e-107 393.3 385 58.7
Dinv22283 Davidia involucrata HOM05D004411 ORTHO05D005569 7.0e-106 388.3 385 57.1
Hma1.2p1_0938F.1_g239200 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 9.1e-106 387.9 385 55.8
Rhsim04G0001700 Rhododendron simsii HOM05D004411 ORTHO05D005569 2.6e-105 386.3 389 58.1
Actinidia35328 Actinidia chinensis HOM05D004411 ORTHO05D005569 3.2e-103 379.4 390 56.9
GSVIVG01008286001 Vitis vinifera HOM05D004411 ORTHO05D005569 3.2e-103 379.4 391 57.3
vmacro09736 Vaccinium macrocarpon HOM05D004411 ORTHO05D005569 3.9e-101 372.5 389 55.8
Rhsim04G0000600 Rhododendron simsii HOM05D004411 ORTHO05D005569 6.7e-101 371.7 401 55.6
Dinv40733 Davidia involucrata HOM05D004411 ORTHO05D005569 2.0e-100 370.2 361 57.3
MSTRG.12964 Avicennia marina HOM05D004411 ORTHO05D005569 1.0e-96 357.8 407 55.3
Migut.H01843 Erythranthe guttata HOM05D004411 ORTHO05D005569 1.6e-94 350.5 403 53.6
QL08p012116 Quercus lobata HOM05D004411 ORTHO05D005569 4.4e-92 342.4 414 52.7
QL08p011929 Quercus lobata HOM05D004411 ORTHO05D005569 9.7e-92 341.3 414 52.9
TAR627G0926 Trochodendron aralioides HOM05D004411 ORTHO05D005569 1.1e-90 337.8 395 52.4
Atru.chr2.3274 Acer truncatum HOM05D004411 ORTHO05D005569 2.7e-89 333.2 419 49.6
CiPaw.05G090700 Carya illinoinensis HOM05D004411 ORTHO05D005569 2.7e-89 333.2 390 51.3
ECA236G1785 Erigeron canadensis HOM05D004411 ORTHO05D005569 2.7e-89 333.2 382 54.2
Prupe.4G208500 Prunus persica HOM05D004411 ORTHO05D005569 2.7e-89 333.2 387 53.5
SalBow7G1998 Salvia bowleyana HOM05D004411 ORTHO05D005569 3.5e-89 332.8 414 50.2
Ciclev10008629m.g Citrus clementina HOM05D004411 ORTHO05D005569 1.0e-88 331.3 387 51.2
Thecc.07G044400 Theobroma cacao HOM05D004411 ORTHO05D005569 1.7e-88 330.5 398 52.8
RcHm_v2.0_Chr5g0037971 Rosa chinensis HOM05D004411 ORTHO05D005569 2.9e-88 329.7 389 52.2
CANSAT56G2724 Cannabis sativa HOM05D004411 ORTHO05D005569 1.5e-87 327.4 390 52.1
TWI38G0098 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 9.4e-87 324.7 398 50.3
Duzib213G0043 Durio zibethinus HOM05D004411 ORTHO05D005569 1.2e-86 324.3 402 51.2
Oeu021397.1 Olea europaea HOM05D004411 ORTHO05D005569 2.1e-86 323.6 364 54.7
Gorai.002G085400 Gossypium raimondii HOM05D004411 ORTHO05D005569 4.7e-86 322.4 396 50.8
Gohir.D01G064500 Gossypium hirsutum HOM05D004411 ORTHO05D005569 1.0e-85 321.2 396 50.5
Oeu005458.1 Olea europaea HOM05D004411 ORTHO05D005569 1.8e-85 320.5 418 48.3
Eucgr.E01365 Eucalyptus grandis HOM05D004411 ORTHO05D005569 8.8e-85 318.2 388 50.0
FvH4_3g22120 Fragaria vesca HOM05D004411 ORTHO05D005569 1.5e-84 317.4 389 51.7
Potri.011G136400 Populus trichocarpa HOM05D004411 ORTHO05D005569 2.6e-84 316.6 383 50.1
SGA_v2.0_scaffold9G05058 Striga asiatica HOM05D004411 ORTHO05D005569 7.5e-84 315.1 443 46.0
Gohir.A01G077000 Gossypium hirsutum HOM05D004411 ORTHO05D005569 9.8e-84 314.7 394 50.5
HanXRQChr11g0336281 Helianthus annuus HOM05D004411 ORTHO05D005569 2.4e-82 310.1 378 49.5
ClCG10G005570 Citrullus lanatus HOM05D004411 ORTHO05D005569 3.1e-82 309.7 388 48.2
Nitab4.5_0000622g0210 Nicotiana tabacum HOM05D004411 ORTHO05D005569 1.2e-81 307.8 389 53.7
Sed0027425 Sechium edule HOM05D004411 ORTHO05D005569 7.7e-81 305.1 394 47.0
Lsat_1_v5_gn_7_109101 Lactuca sativa HOM05D004411 ORTHO05D005569 1.0e-80 304.7 339 55.5
TAR624G0740 Trochodendron aralioides HOM05D004411 ORTHO05D005569 1.7e-80 303.9 346 53.2
Medtr3g019330 Medicago truncatula HOM05D004411 ORTHO05D005569 3.8e-80 302.8 406 48.8
PSO210G6597 Papaver somniferum HOM05D004411 ORTHO05D005569 1.5e-79 300.8 394 46.7
FAN25G3657 Fragaria x ananassa HOM05D006818 ORTHO05D008674 5.5e-79 298.9 408 48.5
PSO210G7535 Papaver somniferum HOM05D004411 ORTHO05D005569 9.5e-79 298.1 392 46.2
Ca_05663_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 1.2e-78 297.7 408 47.3
Ca_24447_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 1.2e-78 297.7 408 47.1
MELO3C003591.2 Cucumis melo HOM05D004411 ORTHO05D005569 1.6e-78 297.4 393 47.6
CsaV3_3G017510 Cucumis sativus L. HOM05D004411 ORTHO05D005569 1.6e-78 297.4 396 46.2
TWI38G2195 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 5.2e-77 292.4 265 59.6
Sabra11G0122500 Salix brachista HOM05D004411 ORTHO05D005569 2.0e-76 290.4 411 46.7
Hund07317 Selenicereus undatus HOM05D004411 ORTHO05D005569 2.0e-76 290.4 401 44.9
MD11G1222400 Malus domestica HOM05D004411 ORTHO05D005569 3.4e-76 289.7 358 52.0
TPR.G3855 Trifolium pratense HOM05D004411 ORTHO05D005569 3.4e-76 289.7 436 46.6
PGR083G2632 Punica granatum HOM05D004411 ORTHO05D005569 9.8e-76 288.1 385 46.8
unitig_0.g2388 Utricularia gibba HOM05D004411 ORTHO05D005569 1.3e-75 287.7 370 48.1
Psat5g216880 Pisum sativum HOM05D004411 ORTHO05D005569 1.7e-75 287.3 396 46.5
Glyma.08G313000 Glycine max HOM05D004411 ORTHO05D005569 6.3e-75 285.4 338 50.0
Sc06g0005160 Simmondsia chinensis HOM05D004411 ORTHO05D005569 1.1e-74 284.6 332 51.2
RcHm_v2.0_Chr1g0330851 Rosa chinensis HOM05D004411 ORTHO05D005569 2.4e-74 283.5 218 66.1
Lj6g0013350 Lotus japonicus HOM05D004411 ORTHO05D005569 3.2e-74 283.1 345 48.7
Atru.chr7.1306 Acer truncatum HOM05D004411 ORTHO05D005569 7.0e-74 282.0 249 59.0
THA.LOC104798777 Tarenaya hassleriana HOM05D004411 ORTHO05D005569 1.6e-73 280.8 384 45.3
Lalb_Chr18g0049751 Lupinus albus HOM05D004411 ORTHO05D005569 3.5e-73 279.6 340 46.8
EL10Ac9g22002 Beta vulgaris HOM05D004411 ORTHO05D005569 1.0e-72 278.1 395 45.6
Phvul.006G038300 Phaseolus vulgaris HOM05D004411 ORTHO05D005569 1.0e-72 278.1 349 49.9
PGSC0003DMG401013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 2.3e-72 276.9 252 64.7
arahy.Tifrunner.gnm1.ann1.01DGNM Arachis hypogaea HOM05D004411 ORTHO05D005569 8.6e-72 275.0 343 48.7
Aa31LG10G3320 Aethionema arabicum HOM05D004411 ORTHO05D005569 9.5e-71 271.6 382 43.5
DCAR_008678 Daucus carota HOM05D004411 ORTHO05D005569 2.1e-70 270.4 387 48.6
arahy.Tifrunner.gnm1.ann1.7KL5HB Arachis hypogaea HOM05D004411 ORTHO05D005569 6.1e-70 268.9 343 47.5
CiPaw.11G186800 Carya illinoinensis HOM05D004411 ORTHO05D005569 1.4e-69 267.7 220 63.2
AL1G58640 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 5.2e-69 265.8 248 54.8
Medtr4g088440 Medicago truncatula HOM05D004411 ORTHO05D005569 2.6e-68 263.5 236 60.2
Lj2g0018498 Lotus japonicus HOM05D004411 ORTHO05D005569 1.7e-67 260.8 345 47.0
Glyma.08G318600 Glycine max HOM05D004411 ORTHO05D005569 6.4e-67 258.8 326 49.7
AT1G50910 Arabidopsis thaliana HOM05D004411 ORTHO05D005569 2.4e-66 256.9 298 50.0
AUR62000402 Chenopodium quinoa HOM05D004411 ORTHO05D005569 3.2e-66 256.5 373 43.4
Thhalv10011488m.g Eutrema salsugineum HOM05D004411 ORTHO05D005569 7.0e-66 255.4 436 40.6
Sp1g37650 Schrenkiella parvula HOM05D004411 ORTHO05D005569 2.0e-65 253.8 247 54.3
FAN21G4008 Fragaria x ananassa HOM05D004411 ORTHO05D005569 1.0e-64 251.5 409 42.1
CARHR040960 Cardamine hirsuta HOM05D004411 ORTHO05D005569 6.6e-64 248.8 330 46.7
Carub.0001s3986 Capsella rubella HOM05D004411 ORTHO05D005569 1.9e-63 247.3 333 46.5
Aqoxy3G00168 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 1.2e-62 244.6 392 41.3
Nn1g07099 Nelumbo nucifera HOM05D004411 ORTHO05D005569 1.5e-60 237.7 184 67.4
BraA06t23489Z Brassica rapa HOM05D004411 ORTHO05D005569 9.8e-60 235.0 252 52.0
A06p02820 Brassica napus HOM05D004411 ORTHO05D005569 8.3e-59 231.9 322 44.7
BcaB07g33532 Brassica carinata HOM05D004411 ORTHO05D005569 1.4e-58 231.1 281 48.0
Aqoxy7G03937 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 7.1e-58 228.8 399 41.6
BcaC08g43264 Brassica carinata HOM05D004411 ORTHO05D005569 2.7e-57 226.9 359 41.2
C06p06080 Brassica napus HOM05D004411 ORTHO05D005569 2.7e-57 226.9 359 41.2
BolC6t35721H Brassica oleracea HOM05D004411 ORTHO05D005569 2.7e-57 226.9 359 41.2
Cpa.g.sc12.166 Carica papaya HOM05D004411 ORTHO05D005569 4.6e-57 226.1 389 40.4
FAN16G0093 Fragaria x ananassa HOM05D006818 ORTHO05D008674 1.0e-56 224.9 434 38.0
Lalb_Chr15g0080391 Lupinus albus HOM05D004411 ORTHO05D005569 1.7e-56 224.2 184 61.4
AL8G37460 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 5.1e-56 222.6 300 45.0
CDE07G0547 Ceratophyllum demersum HOM05D004411 ORTHO05D005569 4.3e-55 219.5 342 41.5
AL2G19790 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 5.6e-55 219.2 182 61.5
SHI31835 Sapria himalayana HOM05D004411 ORTHO05D005569 7.3e-55 218.8 272 46.7
ATR0564G530 Amborella trichopoda HOM05D004411 ORTHO05D005569 3.1e-53 213.4 342 39.5
Haze_09645 Corylus avellana HOM05D006818 ORTHO05D008674 4.0e-53 213.0 369 40.4
Manes.03G127300 Manihot esculenta HOM05D004411 ORTHO05D005569 3.4e-52 209.9 381 37.3
BolC5t32046H Brassica oleracea HOM05D004411 ORTHO05D005569 2.4e-50 203.8 213 51.6
AUR62006758 Chenopodium quinoa HOM05D004411 ORTHO05D005569 3.2e-50 203.4 401 36.7
BcaB06g26197 Brassica carinata HOM05D004411 ORTHO05D005569 2.1e-49 200.7 259 47.5
HPP92_013625 Vanilla planifolia HOM05D004411 ORTHO05D005569 1.0e-48 198.4 386 38.6
FAN11G0521 Fragaria x ananassa HOM05D006818 ORTHO05D008674 6.6e-48 195.7 385 39.2
SEGI_26616 Sequoiadendron giganteum HOM05D004411 ORTHO05D005569 1.1e-47 194.9 413 34.6
Zm00001eb317630 Zea mays HOM05D004411 ORTHO05D005569 9.6e-47 191.8 346 37.9
COL.COLO4_09627 Corchorus olitorius HOM05D004411 ORTHO05D005569 2.1e-46 190.7 284 46.1
PSO210G0554 Papaver somniferum HOM05D004411 ORTHO05D005569 8.1e-46 188.7 278 42.8
BcaB02g11193 Brassica carinata HOM05D004411 ORTHO05D005569 1.8e-45 187.6 384 39.6
C05p33200 Brassica napus HOM05D004411 ORTHO05D005569 1.8e-45 187.6 192 53.6
Zm00001eb253190 Zea mays HOM05D004411 ORTHO05D005569 5.2e-45 186.0 228 46.5
Os09g0504900 Oryza sativa ssp. japonica HOM05D004411 ORTHO05D005569 1.7e-43 181.0 350 38.0
MD03G1208200 Malus domestica HOM05D004411 ORTHO05D005569 3.3e-39 166.8 357 38.9
Ah.06g195930 Amaranthus hybridus HOM05D004411 ORTHO05D005569 4.8e-38 162.9 270 40.7
ECA236G1239 Erigeron canadensis HOM05D004411 ORTHO05D005569 6.0e-33 146.0 241 45.2
PSO339G6638 Papaver somniferum HOM05D004411 ORTHO05D005569 1.5e-31 141.4 171 44.4
DCAR_011015 Daucus carota HOM05D004411 ORTHO05D005569 1.2e-28 131.7 183 42.6
Hma1.2p1_3713F.1_g337350 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 1.2e-28 131.7 85 74.1
VMungo1383G2244 Vigna mungo HOM05D004411 ORTHO05D005569 2.0e-28 131.0 122 54.9
Glyma.09G101400 Glycine max HOM05D004411 ORTHO05D005569 7.6e-28 129.0 205 43.9
Cc00_g16970 Coffea canephora HOM05D004411 ORTHO05D005569 2.9e-27 127.1 117 59.8
Cc09_g02490 Coffea canephora HOM05D004411 ORTHO05D005569 8.4e-27 125.6 104 64.4
VMungo0540G0671 Vigna mungo HOM05D004411 ORTHO05D005569 2.4e-26 124.0 210 41.4
VMungo1383G3213 Vigna mungo HOM05D004411 ORTHO05D005569 8.7e-24 115.5 181 42.0
A05p19860 Brassica napus HOM05D004411 ORTHO05D005569 1.1e-23 115.2 123 51.2
BraA05t20891Z Brassica rapa HOM05D004411 ORTHO05D005569 1.1e-23 115.2 123 51.2
Cc02_g22100 Coffea canephora HOM05D004411 ORTHO05D005569 1.1e-23 115.2 114 57.0
Oeu034511.1 Olea europaea HOM05D004411 ORTHO05D005569 2.8e-22 110.5 81 64.2
Glyma.09G101500 Glycine max HOM05D004411 ORTHO05D005569 4.5e-20 103.2 84 60.7
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 1.7e-19 101.3 86 61.6
Pp3c25_11530 Physcomitrium patens HOM05D004411 ORTHO05D005569 3.8e-19 100.1 374 29.4
EL10Ac9g22233 Beta vulgaris HOM05D004411 ORTHO05D005569 1.1e-18 98.6 242 33.5
PGSC0003DMG400013925 Solanum tuberosum HOM05D004411 ORTHO05D005569 1.1e-18 98.6 49 98.0
Mapoly0160s0028 Marchantia polymorpha HOM05D004411 ORTHO05D005569 1.1e-15 88.6 258 29.8
SMO367G0149 Selaginella moellendorffii HOM05D004411 ORTHO05D005569 1.3e-14 85.1 202 33.2
Haze_07158 Corylus avellana HOM05D004411 ORTHO05D005569 2.9e-11 73.9 68 54.4
AagrBONN_evm.TU.Sc2ySwM_344.3992 Anthoceros agrestis HOM05D004411 ORTHO05D005569 6.5e-11 72.8 113 38.9
GSVIVG01036883001 Vitis vinifera HOM05D004411 ORTHO05D005569 2.5e-10 70.9 55 58.2
arahy.Tifrunner.gnm1.ann1.ZM7UYF Arachis hypogaea HOM05D004411 ORTHO05D005569 2.1e-09 67.8 98 40.8
arahy.Tifrunner.gnm1.ann1.H97TV8 Arachis hypogaea HOM05D004411 ORTHO05D005569 7.9e-09 65.9 83 44.6
Lalb_Chr15g0080381 Lupinus albus HOM05D004411 ORTHO05D005569 1.1e-07 62.0 110 33.6
CBR_g6715 Chara braunii HOM05D004411 ORTHO05D005569 1.5e-07 61.6 166 31.9


User provided reference genes

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