Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g064210.2 Solanum lycopersicum HOM05D006536 ORTHO05D005877 1.5e-74 282.7 140 100.0
PGSC0003DMG400001033 Solanum tuberosum HOM05D006536 ORTHO05D005877 3.1e-67 258.5 142 90.8
Sopen07g032350 Solanum pennellii HOM05D006536 ORTHO05D005877 2.5e-61 238.8 142 86.6
Sopen07g032360 Solanum pennellii HOM05D006536 ORTHO05D005877 2.3e-59 232.3 143 81.8
Solyc07g064220.1 Solanum lycopersicum HOM05D006536 ORTHO05D005877 7.6e-50 200.7 122 79.5
Nitab4.5_0000397g0170 Nicotiana tabacum HOM05D006536 ORTHO05D005877 4.6e-47 191.4 144 68.8
Peaxi162Scf00450g00873 Petunia axillaris HOM05D006536 ORTHO05D005877 1.2e-44 183.3 145 65.5
Nitab4.5_0000472g0270 Nicotiana tabacum HOM05D006536 ORTHO05D005877 1.2e-42 176.8 145 60.0
Peaxi162Scf00450g00816 Petunia axillaris HOM05D006536 ORTHO05D005877 2.2e-41 172.6 145 61.4
Peaxi162Scf00057g00136 Petunia axillaris HOM05D006536 ORTHO05D005877 1.6e-39 166.4 144 59.0
Nitab4.5_0006023g0020 Nicotiana tabacum HOM05D006536 ORTHO05D005877 4.6e-39 164.9 144 58.3
Peaxi162Scf00450g00854 Petunia axillaris HOM05D006536 ORTHO05D005877 6.0e-39 164.5 145 58.6
Nitab4.5_0001479g0050 Nicotiana tabacum HOM05D006536 ORTHO05D005877 1.0e-38 163.7 144 61.8
Nitab4.5_0001479g0060 Nicotiana tabacum HOM05D006536 ORTHO05D005877 2.3e-38 162.5 144 61.8
Nitab4.5_0004487g0010 Nicotiana tabacum HOM05D006536 ORTHO05D005877 6.6e-38 161.0 143 61.5
Nitab4.5_0003461g0020 Nicotiana tabacum HOM05D003749 ORTHO05D004421 6.2e-36 154.5 141 60.3
Nitab4.5_0008018g0020 Nicotiana tabacum HOM05D006536 ORTHO05D005877 1.7e-33 146.4 144 56.9
Nitab4.5_0001479g0070 Nicotiana tabacum HOM05D006536 ORTHO05D005877 4.6e-31 138.3 138 56.5
Sopen07g032370 Solanum pennellii HOM05D006536 ORTHO05D005877 6.0e-31 137.9 144 56.2
Nitab4.5_0000397g0180 Nicotiana tabacum HOM05D006536 ORTHO05D005877 3.3e-29 132.1 114 64.0
CAN.G257.108 Capsicum annuum HOM05D006536 ORTHO05D005877 1.5e-26 123.2 90 68.9
Nitab4.5_0006918g0010 Nicotiana tabacum HOM05D006536 ORTHO05D005877 4.6e-23 111.7 77 70.1
PGSC0003DMG400001052 Solanum tuberosum HOM05D006536 ORTHO05D005877 2.6e-18 95.9 77 61.0
Hma1.2p1_0745F.1_g212040 Hydrangea macrophylla HOM05D006536 ORTHO05D005877 3.4e-18 95.5 139 41.7
Cfa020407 Carpinus fangiana HOM05D006536 ORTHO05D005877 7.9e-15 84.3 148 35.8
HanXRQChr11g0332911 Helianthus annuus HOM05D009374 ORTHO05D012864 1.3e-14 83.6 158 34.2
CANSAT54G1080 Cannabis sativa HOM05D006536 ORTHO05D005877 1.8e-14 83.2 136 38.2
Ciclev10009848m.g Citrus clementina HOM05D007475 ORTHO05D005877 8.7e-14 80.9 144 37.5
Dinv26537 Davidia involucrata HOM05D006536 ORTHO05D005877 8.7e-14 80.9 142 35.9
PSO478G5239 Papaver somniferum HOM05D006536 ORTHO05D005877 8.7e-14 80.9 141 36.2
SalBow3G0084 Salvia bowleyana HOM05D003262 ORTHO05D003608 1.9e-13 79.7 154 36.4
HanXRQChr11g0332931 Helianthus annuus HOM05D009374 ORTHO05D012864 2.5e-13 79.3 153 33.3
HanXRQChr11g0337791 Helianthus annuus HOM05D009374 ORTHO05D012864 7.4e-13 77.8 154 33.8
Cfa020408 Carpinus fangiana HOM05D006536 ORTHO05D005877 9.6e-13 77.4 149 34.2
PSO541G4685 Papaver somniferum HOM05D006536 ORTHO05D005877 1.6e-12 76.6 140 34.3
PSO541G3913 Papaver somniferum HOM05D006536 ORTHO05D005877 2.1e-12 76.3 140 36.4
SGA_v2.0_scaffold13G06718 Striga asiatica HOM05D006536 ORTHO05D005877 2.1e-12 76.3 112 35.7
PSO541G5532 Papaver somniferum HOM05D006536 ORTHO05D005877 4.8e-12 75.1 136 34.6
SGA_v2.0_scaffold13G06717 Striga asiatica HOM05D006536 ORTHO05D005877 4.8e-12 75.1 144 34.0
Migut.J01038 Erythranthe guttata HOM05D006536 ORTHO05D005877 6.3e-12 74.7 147 32.7
PSO675G9181 Papaver somniferum HOM05D006536 ORTHO05D005877 6.3e-12 74.7 140 35.0
CiPaw.12G126700 Carya illinoinensis HOM05D006536 ORTHO05D005877 8.2e-12 74.3 149 35.6
Migut.J01035 Erythranthe guttata HOM05D006536 ORTHO05D005877 8.2e-12 74.3 147 33.3
SHI26644 Sapria himalayana HOM05D006536 ORTHO05D005877 8.2e-12 74.3 146 30.1
THA.LOC104822213 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 8.2e-12 74.3 152 32.2
CANSAT54G2394 Cannabis sativa HOM05D006536 ORTHO05D005877 1.1e-11 73.9 94 41.5
ECA236G4404 Erigeron canadensis HOM05D009374 ORTHO05D012864 1.1e-11 73.9 145 32.4
Thecc.07G051300 Theobroma cacao HOM05D006536 ORTHO05D005877 1.4e-11 73.6 147 33.3
THA.LOC104799882 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 1.8e-11 73.2 152 31.6
TWI39G0980 Tripterygium wilfordii HOM05D006536 ORTHO05D005877 1.8e-11 73.2 150 34.0
CDE11G0553 Ceratophyllum demersum HOM05D006536 ORTHO05D005877 2.4e-11 72.8 141 31.9
Dinv40717 Davidia involucrata HOM05D006536 ORTHO05D005877 3.1e-11 72.4 119 41.2
Migut.J01041 Erythranthe guttata HOM05D006536 ORTHO05D005877 3.1e-11 72.4 147 32.0
ClCG10G005680 Citrullus lanatus HOM05D006536 ORTHO05D005877 4.1e-11 72.0 140 31.4
SHI26637 Sapria himalayana HOM05D006536 ORTHO05D005877 4.1e-11 72.0 143 31.5
THA.LOC104799881 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 4.1e-11 72.0 156 31.4
THA.LOC104817654 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 5.3e-11 71.6 152 30.9
Cpa.g.sc10.244 Carica papaya HOM05D007475 ORTHO05D009529 6.9e-11 71.2 155 36.8
CDE05G1907 Ceratophyllum demersum HOM05D006536 ORTHO05D005877 6.9e-11 71.2 141 31.2
Sed0024994 Sechium edule HOM05D006536 ORTHO05D005877 6.9e-11 71.2 142 31.7
MELO3C025418.2 Cucumis melo HOM05D006536 ORTHO05D005877 9.0e-11 70.9 144 28.5
Lsat_1_v5_gn_3_115400 Lactuca sativa HOM05D006536 ORTHO05D005877 9.0e-11 70.9 146 34.2
THA.LOC104813415 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 1.2e-10 70.5 154 30.5
SHI26638 Sapria himalayana HOM05D006536 ORTHO05D005877 2.0e-10 69.7 142 31.0
Lsat_1_v5_gn_7_106501 Lactuca sativa HOM05D009374 ORTHO05D012864 2.6e-10 69.3 151 30.5
PSO017G6165 Papaver somniferum HOM05D006536 ORTHO05D005877 3.4e-10 68.9 93 39.8
PGR083G0291 Punica granatum HOM05D006536 ORTHO05D005877 3.4e-10 68.9 148 33.1
DCAR_022529 Daucus carota HOM05D006536 ORTHO05D005877 4.5e-10 68.6 109 33.0
unitig_8.g4307 Utricularia gibba HOM05D006536 ORTHO05D005877 4.5e-10 68.6 154 29.9
Eucgr.F03431 Eucalyptus grandis HOM05D006536 ORTHO05D005877 5.9e-10 68.2 153 33.3
Lsat_1_v5_gn_3_115460 Lactuca sativa HOM05D006536 ORTHO05D005877 5.9e-10 68.2 143 31.5
SHI26633 Sapria himalayana HOM05D006536 ORTHO05D005877 7.6e-10 67.8 144 30.6
PSO541G2788 Papaver somniferum HOM05D006536 ORTHO05D005877 1.0e-09 67.4 139 32.4
vmacro11762 Vaccinium macrocarpon HOM05D006536 ORTHO05D005877 1.0e-09 67.4 116 34.5
CANSAT11G1392 Cannabis sativa HOM05D006536 ORTHO05D005877 1.3e-09 67.0 105 33.3
ECA236G3076 Erigeron canadensis HOM05D009374 ORTHO05D012864 1.3e-09 67.0 111 35.1
ClCG10G005660 Citrullus lanatus HOM05D006536 ORTHO05D005877 1.7e-09 66.6 153 32.7
CDE11G0063 Ceratophyllum demersum HOM05D006536 ORTHO05D005877 2.2e-09 66.2 137 32.1
Migut.J01036 Erythranthe guttata HOM05D006536 ORTHO05D005877 2.2e-09 66.2 111 36.9
Peaxi162Scf00714g00425 Petunia axillaris HOM05D006536 ORTHO05D005877 2.9e-09 65.9 152 30.9
Oeu022218.1 Olea europaea HOM05D006536 ORTHO05D005877 5.0e-09 65.1 152 30.3
Potri.011G134400 Populus trichocarpa HOM05D006536 ORTHO05D005877 5.0e-09 65.1 143 32.9
Potri.011G134500 Populus trichocarpa HOM05D006536 ORTHO05D005877 5.0e-09 65.1 143 32.9
QL08p013066 Quercus lobata HOM05D006536 ORTHO05D005877 5.0e-09 65.1 141 32.6
THA.LOC104817656 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 6.5e-09 64.7 152 30.3
THA.LOC104822214 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 6.5e-09 64.7 152 30.3
THA.LOC104822215 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 6.5e-09 64.7 152 30.3
Atru.chr2.3226 Acer truncatum HOM05D001264 ORTHO05D001167 8.5e-09 64.3 125 31.2
SHI27896 Sapria himalayana HOM05D006536 ORTHO05D005877 8.5e-09 64.3 118 33.1
SHI26699 Sapria himalayana HOM05D006536 ORTHO05D005877 1.4e-08 63.5 118 33.1
Thhalv10015934m.g Eutrema salsugineum HOM05D007475 ORTHO05D009529 1.9e-08 63.2 160 32.5
Lsat_1_v5_gn_7_93341 Lactuca sativa HOM05D009374 ORTHO05D012864 1.9e-08 63.2 159 29.6
Lsat_1_v5_gn_7_93361 Lactuca sativa HOM05D009374 ORTHO05D012864 1.9e-08 63.2 159 29.6
Lsat_1_v5_gn_7_93381 Lactuca sativa HOM05D009374 ORTHO05D012864 1.9e-08 63.2 159 29.6
Lsat_1_v5_gn_7_93441 Lactuca sativa HOM05D009374 ORTHO05D012864 1.9e-08 63.2 159 29.6
Lsat_1_v5_gn_7_93500 Lactuca sativa HOM05D009374 ORTHO05D012864 1.9e-08 63.2 159 29.6
Lsat_1_v5_gn_7_93520 Lactuca sativa HOM05D009374 ORTHO05D012864 1.9e-08 63.2 159 29.6
AUR62015663 Chenopodium quinoa HOM05D009374 ORTHO05D005877 2.5e-08 62.8 132 29.5
Sabra11G0120700 Salix brachista HOM05D006536 ORTHO05D005877 2.5e-08 62.8 147 31.3
Lsat_1_v5_gn_5_5901 Lactuca sativa HOM05D009374 ORTHO05D005877 3.2e-08 62.4 160 26.9
COL.COLO4_09579 Corchorus olitorius HOM05D006536 ORTHO05D005877 4.2e-08 62.0 121 33.9
ECA240G4697 Erigeron canadensis HOM05D009374 ORTHO05D005877 4.2e-08 62.0 109 33.0
TWI39G0888 Tripterygium wilfordii HOM05D006536 ORTHO05D005877 4.2e-08 62.0 135 32.6
Gohir.A01G075200 Gossypium hirsutum HOM05D015826 ORTHO05D005877 5.5e-08 61.6 144 33.3
vmacro11763 Vaccinium macrocarpon HOM05D006536 ORTHO05D005877 5.5e-08 61.6 144 31.2
Cpa.g.sc97.59 Carica papaya HOM05D007475 ORTHO05D009529 7.2e-08 61.2 147 32.7
AUR62020540 Chenopodium quinoa HOM05D009374 ORTHO05D005877 7.2e-08 61.2 132 28.0
Nn1g07021 Nelumbo nucifera HOM05D023228 ORTHO05D005877 7.2e-08 61.2 150 32.0
Nitab4.5_0003924g0010 Nicotiana tabacum HOM05D006536 ORTHO05D005877 7.2e-08 61.2 129 30.2
Sp6g16690 Schrenkiella parvula HOM05D007475 ORTHO05D009529 7.2e-08 61.2 164 32.9
ECA236G3141 Erigeron canadensis HOM05D009374 ORTHO05D012864 9.3e-08 60.8 155 31.0
HanXRQChr13g0408641 Helianthus annuus HOM05D009374 ORTHO05D005877 9.3e-08 60.8 151 25.2
Oeu007646.1 Olea europaea HOM05D006536 ORTHO05D005877 1.2e-07 60.5 100 29.0
Sabra02G0106400 Salix brachista HOM05D006536 ORTHO05D005877 1.6e-07 60.1 105 36.2
THA.LOC104809798 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 1.6e-07 60.1 110 32.7
AL8G30160 Arabidopsis lyrata HOM05D007475 ORTHO05D009529 2.1e-07 59.7 160 32.5
Manes.03G123600 Manihot esculenta HOM05D006536 ORTHO05D005877 2.1e-07 59.7 144 31.9
unitig_744.g24698 Utricularia gibba HOM05D009374 ORTHO05D005877 2.1e-07 59.7 135 25.9
Aa31LG3G10660 Aethionema arabicum HOM05D007475 ORTHO05D009529 2.7e-07 59.3 155 32.3
Ah.06g183000 Amaranthus hybridus HOM05D001264 ORTHO05D001167 2.7e-07 59.3 141 26.2
EL10Ac4g07942 Beta vulgaris HOM05D009374 ORTHO05D005877 2.7e-07 59.3 139 30.2
Migut.H00699 Erythranthe guttata HOM05D006536 ORTHO05D005877 2.7e-07 59.3 137 29.9
SGA_v2.0_scaffold20G09060 Striga asiatica HOM05D006536 ORTHO05D005877 2.7e-07 59.3 131 32.1
AL7G25640 Arabidopsis lyrata HOM05D007475 ORTHO05D009529 3.6e-07 58.9 146 34.2
AT5G54740 Arabidopsis thaliana HOM05D007475 ORTHO05D009529 3.6e-07 58.9 160 32.5
Nn1g07017 Nelumbo nucifera HOM05D023228 ORTHO05D005877 4.6e-07 58.5 155 29.0
THA.LOC104817655 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 4.6e-07 58.5 151 28.5
Duzib268G0059 Durio zibethinus HOM05D006536 ORTHO05D005877 7.9e-07 57.8 145 29.7
ECA236G0204 Erigeron canadensis HOM05D009374 ORTHO05D012864 7.9e-07 57.8 156 27.6
Solyc08g080480.3 Solanum lycopersicum HOM05D006536 ORTHO05D005877 7.9e-07 57.8 139 27.3
AL7G25650 Arabidopsis lyrata HOM05D007475 ORTHO05D009529 1.0e-06 57.4 148 33.1
Cpa.g.sc10.251 Carica papaya HOM05D007475 ORTHO05D009529 1.0e-06 57.4 160 30.6
MELO3C032238.2 Cucumis melo HOM05D006536 ORTHO05D005877 1.0e-06 57.4 96 32.3
ECA248G3520 Erigeron canadensis HOM05D009374 ORTHO05D012864 1.0e-06 57.4 149 30.9
Migut.M01805 Erythranthe guttata HOM05D036104 ORTHO05D035166 1.0e-06 57.4 152 27.0
Gohir.D01G062500 Gossypium hirsutum HOM05D015826 ORTHO05D005877 1.0e-06 57.4 144 31.2
Gorai.002G083200 Gossypium raimondii HOM05D015826 ORTHO05D005877 1.0e-06 57.4 144 31.2
Nn1g07020 Nelumbo nucifera HOM05D023228 ORTHO05D005877 1.0e-06 57.4 151 30.5
PGR083G1686 Punica granatum HOM05D006536 ORTHO05D005877 1.0e-06 57.4 142 35.2
AT4G27170 Arabidopsis thaliana HOM05D007475 ORTHO05D009529 1.3e-06 57.0 144 32.6
CARHR289420 Cardamine hirsuta HOM05D007475 ORTHO05D009529 1.8e-06 56.6 152 32.2
Cpa.g.sc10.249 Carica papaya HOM05D007475 ORTHO05D009529 1.8e-06 56.6 154 31.2
PSO782G1199 Papaver somniferum HOM05D006536 ORTHO05D005877 1.8e-06 56.6 66 40.9
Cpa.g.sc10.239 Carica papaya HOM05D007475 ORTHO05D009529 2.3e-06 56.2 160 30.0
AL7G25660 Arabidopsis lyrata HOM05D007475 ORTHO05D009529 3.0e-06 55.8 147 34.0
ClCG09G018590 Citrullus lanatus HOM05D006536 ORTHO05D005877 3.0e-06 55.8 141 27.0
DCAR_022530 Daucus carota HOM05D006536 ORTHO05D005877 3.0e-06 55.8 158 28.5
Hma1.2p1_0533F.1_g173670 Hydrangea macrophylla HOM05D006536 ORTHO05D005877 3.0e-06 55.8 68 41.2
CsaV3_3G005360 Cucumis sativus L. HOM05D006536 ORTHO05D005877 5.1e-06 55.1 96 29.2
COL.COLO4_15402 Corchorus olitorius HOM05D006536 ORTHO05D005877 6.7e-06 54.7 144 27.1
PGR083G0622 Punica granatum HOM05D006536 ORTHO05D005877 6.7e-06 54.7 59 44.1
Carub.0008s0615 Capsella rubella HOM05D007475 ORTHO05D009529 8.7e-06 54.3 145 33.1
Eucgr.F00977 Eucalyptus grandis HOM05D006536 ORTHO05D005877 8.7e-06 54.3 149 28.2
HanXRQChr15g0493431 Helianthus annuus HOM05D009374 ORTHO05D012864 8.7e-06 54.3 121 28.9


User provided reference genes

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